Wall clock time and date at job start Tue Mar 31 2020 10:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.65702 * 2 1 4 4 C 1.38839 * 120.20409 * 180.27576 * 3 2 1 5 5 C 1.40477 * 118.99431 * 359.50539 * 4 3 2 6 6 C 1.39441 * 120.33693 * 0.49555 * 5 4 3 7 7 C 1.50702 * 120.14698 * 179.77059 * 6 5 4 8 8 C 1.38044 * 119.69973 * 359.75049 * 6 5 4 9 9 C 1.47462 * 106.60406 * 180.33976 * 5 4 3 10 10 O 1.21352 * 127.59681 * 180.19265 * 9 5 4 11 11 C 1.50006 * 104.81525 * 359.55280 * 9 5 4 12 12 O 1.21305 * 126.24121 * 180.02562 * 11 9 5 13 13 N 1.34431 * 107.52095 * 0.58651 * 11 9 5 14 14 C 1.46496 * 124.28025 * 179.51153 * 13 11 9 15 15 N 1.46500 * 109.46994 * 269.97829 * 14 13 11 16 16 C 1.36936 * 120.00530 * 89.99988 * 15 14 13 17 17 H 1.07997 * 119.99547 * 304.35939 * 16 15 14 18 18 C 1.38813 * 120.00355 * 124.35677 * 16 15 14 19 19 N 1.31615 * 119.99938 * 164.96678 * 18 16 15 20 20 Si 1.86802 * 119.99733 * 344.96551 * 18 16 15 21 21 H 1.48496 * 109.47013 * 92.15294 * 20 18 16 22 22 H 1.48504 * 109.46895 * 212.15153 * 20 18 16 23 23 H 1.48500 * 109.47184 * 332.15308 * 20 18 16 24 24 C 1.46504 * 119.99565 * 269.99705 * 15 14 13 25 25 C 1.53006 * 117.49590 * 183.05453 * 24 15 14 26 26 C 1.53002 * 60.00147 * 252.51399 * 25 24 15 27 27 H 1.08997 * 109.47031 * 89.99457 * 1 2 3 28 28 H 1.08997 * 109.47227 * 209.99731 * 1 2 3 29 29 H 1.09004 * 109.46596 * 329.99762 * 1 2 3 30 30 H 1.07993 * 119.89895 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.46944 * 269.97573 * 7 6 5 32 32 H 1.08994 * 109.47260 * 29.97937 * 7 6 5 33 33 H 1.09002 * 109.46804 * 149.98063 * 7 6 5 34 34 H 1.08004 * 119.96431 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47208 * 29.97057 * 14 13 11 36 36 H 1.08998 * 109.47121 * 149.97619 * 14 13 11 37 37 H 0.97002 * 119.99554 * 180.02562 * 19 18 16 38 38 H 1.08996 * 115.55424 * 328.76621 * 24 15 14 39 39 H 1.09000 * 117.50073 * 0.02562 * 25 24 15 40 40 H 1.09002 * 117.49384 * 145.02173 * 25 24 15 41 41 H 1.08997 * 117.49487 * 252.51471 * 26 25 24 42 42 H 1.08994 * 117.51412 * 107.48115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.2016 0.0000 4 6 3.5794 1.2148 -0.0058 5 6 4.2721 -0.0073 -0.0010 6 6 3.5724 -1.2134 -0.0010 7 6 4.3198 -2.5221 -0.0010 8 6 2.1920 -1.2033 -0.0005 9 6 5.7093 0.3229 -0.0006 10 8 6.6461 -0.4484 -0.0002 11 6 5.7584 1.8221 -0.0168 12 8 6.7598 2.5067 -0.0219 13 7 4.4905 2.2686 -0.0121 14 6 4.1143 3.6845 -0.0140 15 7 3.9947 4.1598 1.3666 16 6 5.0849 4.6864 2.0063 17 1 5.9952 4.1106 2.0848 18 6 5.0201 5.9604 2.5538 19 7 5.9365 6.3552 3.4121 20 14 3.6322 7.1143 2.0724 21 1 2.5085 6.9641 3.0315 22 1 4.1220 8.5160 2.0993 23 1 3.1628 6.7801 0.7038 24 6 2.7087 4.0717 2.0627 25 6 2.6300 4.6498 3.4772 26 6 2.6210 3.1341 3.2687 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6439 2.1326 0.0004 31 1 4.4996 -2.8377 -1.0287 32 1 5.2729 -2.3961 0.5124 33 1 3.7273 -3.2788 0.5131 34 1 1.6457 -2.1350 -0.0009 35 1 4.8790 4.2629 -0.5324 36 1 3.1587 3.8058 -0.5241 37 1 5.8909 7.2453 3.7950 38 1 1.8250 4.1634 1.4313 39 1 3.5350 5.0961 3.8896 40 1 1.6944 5.1223 3.7764 41 1 1.6795 2.6094 3.4308 42 1 3.5200 2.5827 3.5438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747789453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:41 Heat of formation + Delta-G solvation = 33.855826 kcal Electronic energy + Delta-G solvation = -26931.750169 eV Core-core repulsion = 23265.495594 eV Total energy + Delta-G solvation = -3666.254575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54056 -38.71339 -38.22896 -37.30188 -36.01113 -33.65021 -33.05234 -31.90815 -30.08356 -28.81931 -27.34138 -25.73957 -24.46551 -23.45444 -21.79861 -21.70244 -20.64399 -20.27322 -19.24518 -17.31246 -17.09823 -16.72111 -16.15580 -15.93741 -15.39387 -14.79754 -14.73109 -14.59380 -14.07119 -14.01746 -13.86185 -13.51708 -13.46439 -13.21883 -13.00173 -12.66941 -12.32418 -12.20191 -12.13885 -11.90091 -11.88160 -11.70958 -11.31768 -11.06839 -10.91008 -10.75260 -10.54465 -10.16058 -9.98142 -9.66208 -9.29798 -9.13892 -8.76300 -8.58293 -7.86621 -6.88399 -6.14616 -3.88714 0.26444 1.28198 1.90599 2.84975 3.27784 3.37010 3.38079 3.41331 3.65859 3.80650 4.38078 4.52388 4.58895 4.66048 4.70269 4.74351 5.04319 5.13749 5.17752 5.22289 5.32516 5.41433 5.49288 5.53035 5.55381 5.65399 5.72443 5.79673 5.87020 5.89684 5.93340 6.06508 6.15230 6.34196 6.36435 6.41624 6.45634 6.62282 6.76339 6.87650 7.11373 7.17506 7.31905 7.93753 8.09102 8.33651 8.79034 9.45977 9.83432 10.95152 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005523 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.533869 B = 5068.057384 C = 6238.138648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.008 4.008 3 C -0.161 4.161 4 C 0.230 3.770 5 C -0.262 4.262 6 C 0.031 3.969 7 C -0.125 4.125 8 C -0.177 4.177 9 C 0.389 3.611 10 O -0.392 6.392 11 C 0.490 3.510 12 O -0.435 6.435 13 N -0.549 5.549 14 C 0.346 3.654 15 N -0.555 5.555 16 C -0.298 4.298 17 H 0.077 0.923 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.886 3.114 21 H -0.269 1.269 22 H -0.301 1.301 23 H -0.271 1.271 24 C 0.096 3.904 25 C -0.192 4.192 26 C -0.203 4.203 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.476 -13.251 -7.834 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.009 4.009 3 C -0.182 4.182 4 C 0.131 3.869 5 C -0.267 4.267 6 C 0.031 3.969 7 C -0.181 4.181 8 C -0.196 4.196 9 C 0.260 3.740 10 O -0.263 6.263 11 C 0.272 3.728 12 O -0.304 6.304 13 N -0.277 5.277 14 C 0.140 3.860 15 N -0.274 5.274 16 C -0.427 4.427 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.714 3.286 21 H -0.194 1.194 22 H -0.229 1.229 23 H -0.195 1.195 24 C -0.011 4.011 25 C -0.230 4.230 26 C -0.243 4.243 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.199 -12.850 -7.716 19.326 hybrid contribution -0.774 0.862 0.127 1.166 sum -12.973 -11.988 -7.589 19.225 Atomic orbital electron populations 1.20884 0.90580 1.03349 1.02698 1.19839 0.96040 0.92085 0.92893 1.20128 0.90339 0.98623 1.09081 1.18553 0.91445 0.86529 0.90403 1.20293 0.94821 0.93715 1.17885 1.19492 0.93123 0.93228 0.91088 1.20917 1.00850 0.93352 1.02984 1.20714 0.92693 0.97725 1.08459 1.22696 0.88361 0.90323 0.72589 1.90517 1.44802 1.57604 1.33343 1.21018 0.83903 0.90322 0.77546 1.90808 1.33812 1.63892 1.41892 1.47830 1.04949 1.08459 1.66448 1.21384 0.99876 0.76883 0.87825 1.44204 1.07111 1.67001 1.09038 1.18640 0.92295 0.97480 1.34254 0.90518 1.25791 0.96203 0.96827 0.95261 1.69864 1.35395 1.19677 1.27451 0.86791 0.82628 0.79318 0.79860 1.19431 1.22888 1.19529 1.21476 0.89204 1.02815 0.87602 1.23504 1.03248 0.96016 1.00218 1.23274 1.01148 0.92974 1.06908 0.90574 0.91082 0.90957 0.85202 0.90404 0.90422 0.91008 0.85303 0.88331 0.90790 0.92240 0.89178 0.86140 0.90410 0.90796 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.99 36.00 0.36 -0.48 16 2 C -0.01 -0.08 5.88 -104.53 -0.62 -0.69 16 3 C -0.16 -2.01 9.41 -39.35 -0.37 -2.38 16 4 C 0.23 3.53 6.74 -83.40 -0.56 2.97 16 5 C -0.26 -4.01 6.13 -104.85 -0.64 -4.65 16 6 C 0.03 0.39 5.91 -104.24 -0.62 -0.23 16 7 C -0.12 -1.28 9.86 36.01 0.36 -0.93 16 8 C -0.18 -1.81 9.34 -39.57 -0.37 -2.18 16 9 C 0.39 7.02 7.82 -30.89 -0.24 6.78 16 10 O -0.39 -7.48 16.85 5.49 0.09 -7.39 16 11 C 0.49 9.91 8.16 -11.48 -0.09 9.82 16 12 O -0.44 -10.39 17.69 5.53 0.10 -10.29 16 13 N -0.55 -9.90 2.98 -117.01 -0.35 -10.25 16 14 C 0.35 6.49 6.35 -63.76 -0.40 6.09 16 15 N -0.55 -12.20 2.29 -169.34 -0.39 -12.59 16 16 C -0.30 -8.03 9.17 -15.06 -0.14 -8.17 16 17 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 18 C 0.06 1.73 3.75 -17.43 -0.07 1.67 16 19 N -0.89 -26.09 13.97 55.49 0.78 -25.32 16 20 Si 0.89 20.87 24.85 -169.99 -4.23 16.64 16 21 H -0.27 -5.98 5.81 56.52 0.33 -5.65 16 22 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.10 1.86 5.16 -67.92 -0.35 1.51 16 25 C -0.19 -3.95 6.68 -26.73 -0.18 -4.13 16 26 C -0.20 -3.81 10.36 -26.73 -0.28 -4.08 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 1.49 7.77 -52.49 -0.41 1.08 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.94 6.95 -51.93 -0.36 0.57 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.10 1.97 7.87 -51.93 -0.41 1.56 16 36 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.12 2.95 5.08 -51.93 -0.26 2.69 16 40 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.64 351.94 -8.58 -40.22 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.67 Total: 2.77 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -4.21 Total: 0.91 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.04 Total: -48.16 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.19 Total: -17.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.23 Total: 16.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.64 -8.58 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747789453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.074 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds