Wall clock time and date at job start Tue Mar 31 2020 10:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.65702 * 2 1 4 4 C 1.38839 * 120.20409 * 180.27576 * 3 2 1 5 5 C 1.40477 * 118.99431 * 359.50539 * 4 3 2 6 6 C 1.39441 * 120.33693 * 0.49555 * 5 4 3 7 7 C 1.50702 * 120.14698 * 179.77059 * 6 5 4 8 8 C 1.38044 * 119.69973 * 359.75049 * 6 5 4 9 9 C 1.47462 * 106.60406 * 180.33976 * 5 4 3 10 10 O 1.21352 * 127.59681 * 180.19265 * 9 5 4 11 11 C 1.50006 * 104.81525 * 359.55280 * 9 5 4 12 12 O 1.21305 * 126.24121 * 180.02562 * 11 9 5 13 13 N 1.34431 * 107.52095 * 0.58651 * 11 9 5 14 14 C 1.46496 * 124.28025 * 179.51153 * 13 11 9 15 15 N 1.46500 * 109.46994 * 269.97829 * 14 13 11 16 16 C 1.36936 * 120.00530 * 89.99988 * 15 14 13 17 17 H 1.07997 * 119.99547 * 304.35939 * 16 15 14 18 18 C 1.38813 * 120.00355 * 124.35677 * 16 15 14 19 19 N 1.31615 * 119.99938 * 164.96678 * 18 16 15 20 20 Si 1.86802 * 119.99733 * 344.96551 * 18 16 15 21 21 H 1.48496 * 109.47013 * 92.15294 * 20 18 16 22 22 H 1.48504 * 109.46895 * 212.15153 * 20 18 16 23 23 H 1.48500 * 109.47184 * 332.15308 * 20 18 16 24 24 C 1.46504 * 119.99565 * 269.99705 * 15 14 13 25 25 C 1.53006 * 117.49590 * 183.05453 * 24 15 14 26 26 C 1.53002 * 60.00147 * 252.51399 * 25 24 15 27 27 H 1.08997 * 109.47031 * 89.99457 * 1 2 3 28 28 H 1.08997 * 109.47227 * 209.99731 * 1 2 3 29 29 H 1.09004 * 109.46596 * 329.99762 * 1 2 3 30 30 H 1.07993 * 119.89895 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.46944 * 269.97573 * 7 6 5 32 32 H 1.08994 * 109.47260 * 29.97937 * 7 6 5 33 33 H 1.09002 * 109.46804 * 149.98063 * 7 6 5 34 34 H 1.08004 * 119.96431 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47208 * 29.97057 * 14 13 11 36 36 H 1.08998 * 109.47121 * 149.97619 * 14 13 11 37 37 H 0.97002 * 119.99554 * 180.02562 * 19 18 16 38 38 H 1.08996 * 115.55424 * 328.76621 * 24 15 14 39 39 H 1.09000 * 117.50073 * 0.02562 * 25 24 15 40 40 H 1.09002 * 117.49384 * 145.02173 * 25 24 15 41 41 H 1.08997 * 117.49487 * 252.51471 * 26 25 24 42 42 H 1.08994 * 117.51412 * 107.48115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.2016 0.0000 4 6 3.5794 1.2148 -0.0058 5 6 4.2721 -0.0073 -0.0010 6 6 3.5724 -1.2134 -0.0010 7 6 4.3198 -2.5221 -0.0010 8 6 2.1920 -1.2033 -0.0005 9 6 5.7093 0.3229 -0.0006 10 8 6.6461 -0.4484 -0.0002 11 6 5.7584 1.8221 -0.0168 12 8 6.7598 2.5067 -0.0219 13 7 4.4905 2.2686 -0.0121 14 6 4.1143 3.6845 -0.0140 15 7 3.9947 4.1598 1.3666 16 6 5.0849 4.6864 2.0063 17 1 5.9952 4.1106 2.0848 18 6 5.0201 5.9604 2.5538 19 7 5.9365 6.3552 3.4121 20 14 3.6322 7.1143 2.0724 21 1 2.5085 6.9641 3.0315 22 1 4.1220 8.5160 2.0993 23 1 3.1628 6.7801 0.7038 24 6 2.7087 4.0717 2.0627 25 6 2.6300 4.6498 3.4772 26 6 2.6210 3.1341 3.2687 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6439 2.1326 0.0004 31 1 4.4996 -2.8377 -1.0287 32 1 5.2729 -2.3961 0.5124 33 1 3.7273 -3.2788 0.5131 34 1 1.6457 -2.1350 -0.0009 35 1 4.8790 4.2629 -0.5324 36 1 3.1587 3.8058 -0.5241 37 1 5.8909 7.2453 3.7950 38 1 1.8250 4.1634 1.4313 39 1 3.5350 5.0961 3.8896 40 1 1.6944 5.1223 3.7764 41 1 1.6795 2.6094 3.4308 42 1 3.5200 2.5827 3.5438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747789453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:41 Heat of formation + Delta-G solvation = 14.231233 kcal Electronic energy + Delta-G solvation = -26932.601156 eV Core-core repulsion = 23265.495594 eV Total energy + Delta-G solvation = -3667.105561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.86875 -39.92842 -39.72707 -38.92430 -37.39199 -34.87886 -34.48075 -33.71426 -31.30084 -30.07705 -28.12744 -27.31452 -25.83105 -24.95066 -23.27273 -23.02771 -21.93583 -21.69307 -20.65156 -18.95363 -18.41803 -18.22802 -17.69283 -17.26898 -16.82884 -16.64687 -16.09903 -15.91948 -15.45352 -15.16276 -14.99680 -14.90610 -14.74771 -14.47690 -14.10701 -13.91107 -13.74511 -13.44866 -13.22695 -13.14285 -13.00043 -12.81375 -12.65700 -12.61461 -12.38621 -12.16197 -12.03095 -11.85101 -11.42460 -11.32642 -10.91640 -10.60281 -10.54072 -9.71681 -9.07039 -8.68179 -8.24047 -6.00689 -1.03788 0.27444 0.75921 1.39880 1.42548 1.48832 1.58772 1.87218 2.41927 2.48918 2.68280 2.95274 3.07729 3.31334 3.35017 3.59290 3.83022 3.98064 4.19557 4.21309 4.26432 4.32820 4.33862 4.39648 4.51406 4.63893 4.68929 4.77615 4.82884 4.90433 4.94267 5.01517 5.04337 5.13860 5.27731 5.32573 5.40488 5.45360 5.53875 5.57347 5.68498 5.82739 5.90575 6.07746 6.20593 6.59713 6.93305 7.40641 7.84114 8.89958 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005523 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.533869 B = 5068.057384 C = 6238.138648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.008 3.992 3 C -0.156 4.156 4 C 0.203 3.797 5 C -0.280 4.280 6 C 0.030 3.970 7 C -0.125 4.125 8 C -0.161 4.161 9 C 0.387 3.613 10 O -0.418 6.418 11 C 0.473 3.527 12 O -0.499 6.499 13 N -0.545 5.545 14 C 0.346 3.654 15 N -0.567 5.567 16 C -0.288 4.288 17 H 0.004 0.996 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.958 3.042 21 H -0.240 1.240 22 H -0.317 1.317 23 H -0.247 1.247 24 C 0.097 3.903 25 C -0.209 4.209 26 C -0.187 4.187 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.267 0.733 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.457 -15.125 -9.193 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.007 3.993 3 C -0.177 4.177 4 C 0.106 3.894 5 C -0.284 4.284 6 C 0.029 3.971 7 C -0.181 4.181 8 C -0.180 4.180 9 C 0.261 3.739 10 O -0.290 6.290 11 C 0.257 3.743 12 O -0.372 6.372 13 N -0.273 5.273 14 C 0.141 3.859 15 N -0.288 5.288 16 C -0.417 4.417 17 H 0.021 0.979 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.782 3.218 21 H -0.163 1.163 22 H -0.246 1.246 23 H -0.170 1.170 24 C -0.008 4.008 25 C -0.247 4.247 26 C -0.227 4.227 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.187 0.813 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.263 -14.804 -9.100 25.942 hybrid contribution 1.333 1.195 0.558 1.875 sum -17.929 -13.609 -8.542 24.075 Atomic orbital electron populations 1.21013 0.87295 1.04812 1.04288 1.20348 0.98135 0.91005 0.89795 1.20489 0.88597 1.00645 1.07941 1.18812 0.92455 0.85063 0.93073 1.20179 0.92305 0.95438 1.20482 1.19848 0.94380 0.92625 0.90263 1.20981 0.99986 0.93279 1.03876 1.21209 0.91492 0.99628 1.05629 1.22796 0.90152 0.88890 0.72060 1.90485 1.45938 1.57496 1.35120 1.21684 0.84188 0.91770 0.76696 1.90753 1.35761 1.65468 1.45244 1.47440 1.04791 1.09056 1.65965 1.21511 1.01487 0.76571 0.86379 1.44211 1.06799 1.67577 1.10173 1.18117 0.92045 0.97111 1.34455 0.97861 1.26552 0.99255 0.98305 0.94627 1.70034 1.38756 1.20136 1.29770 0.85663 0.79738 0.75345 0.81065 1.16339 1.24579 1.17015 1.21858 0.88919 1.02287 0.87756 1.23440 1.02585 0.97311 1.01398 1.23190 1.01368 0.91943 1.06187 0.88654 0.89194 0.90061 0.83157 0.89136 0.93046 0.87824 0.81318 0.91048 0.85440 0.92419 0.83902 0.90906 0.87171 0.86249 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.99 71.24 0.71 -0.05 16 2 C 0.01 0.12 5.88 -19.80 -0.12 0.00 16 3 C -0.16 -3.13 9.41 22.42 0.21 -2.91 16 4 C 0.20 5.91 6.74 38.64 0.26 6.17 16 5 C -0.28 -8.42 6.13 -20.01 -0.12 -8.54 16 6 C 0.03 0.64 5.91 -19.62 -0.12 0.53 16 7 C -0.12 -2.27 9.86 71.24 0.70 -1.57 16 8 C -0.16 -2.37 9.34 22.28 0.21 -2.16 16 9 C 0.39 15.03 7.82 27.90 0.22 15.25 16 10 O -0.42 -17.33 16.85 -3.25 -0.05 -17.39 16 11 C 0.47 21.01 8.16 87.49 0.71 21.72 16 12 O -0.50 -26.91 17.69 -3.10 -0.05 -26.96 16 13 N -0.54 -20.22 2.98 -642.68 -1.91 -22.13 16 14 C 0.35 12.91 6.35 170.96 1.09 13.99 16 15 N -0.57 -24.98 2.29 -689.67 -1.58 -26.56 16 16 C -0.29 -16.56 9.17 84.03 0.77 -15.79 16 17 H 0.00 0.26 8.06 -2.91 -0.02 0.23 16 18 C 0.01 0.65 3.75 84.86 0.32 0.97 16 19 N -0.95 -59.81 13.97 21.65 0.30 -59.51 16 20 Si 0.96 43.16 24.85 68.60 1.71 44.86 16 21 H -0.24 -9.60 5.81 99.48 0.58 -9.02 16 22 H -0.32 -15.02 7.11 99.48 0.71 -14.32 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 24 C 0.10 3.44 5.16 45.00 0.23 3.68 16 25 C -0.21 -8.11 6.68 30.60 0.20 -7.90 16 26 C -0.19 -6.53 10.36 30.60 0.32 -6.21 16 27 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.34 8.08 -2.39 -0.02 0.32 16 29 H 0.08 0.48 8.08 -2.38 -0.02 0.46 16 30 H 0.15 2.41 7.77 -2.91 -0.02 2.38 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.23 6.95 -2.39 -0.02 1.21 16 33 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.07 3.01 7.87 -2.39 -0.02 2.99 16 36 H 0.13 3.37 7.65 -2.39 -0.02 3.36 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.14 3.65 8.14 -2.39 -0.02 3.64 16 39 H 0.07 3.61 5.08 -2.39 -0.01 3.60 16 40 H 0.11 3.54 7.86 -2.39 -0.02 3.52 16 41 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -82.17 351.94 4.92 -77.26 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.91 Total: 13.27 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.60 Total: 17.15 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.19 Total: -108.20 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.11 Total: -44.35 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.71 Total: 44.86 kcal Total: -82.17 4.92 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747789453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.489 kcal (2) G-P(sol) polarization free energy of solvation -82.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds