Wall clock time and date at job start Tue Mar 31 2020 11:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30667 * 125.95126 * 2 1 4 4 N 1.40011 * 108.52580 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.89740 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.46930 * 305.02331 * 5 4 3 7 7 O 1.20823 * 119.99630 * 359.97438 * 6 5 4 8 8 O 1.34226 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.45198 * 116.99837 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47255 * 29.99913 * 9 8 6 11 11 C 1.53002 * 109.47247 * 270.00234 * 9 8 6 12 12 C 1.50697 * 109.47388 * 150.00172 * 9 8 6 13 13 H 1.07999 * 119.99662 * 5.37503 * 12 9 8 14 14 C 1.37880 * 120.00482 * 185.37454 * 12 9 8 15 15 N 1.31515 * 120.00110 * 184.89557 * 14 12 9 16 16 Si 1.86800 * 119.99570 * 5.16715 * 14 12 9 17 17 H 1.48499 * 109.47189 * 269.72164 * 16 14 12 18 18 H 1.48497 * 109.47262 * 29.72703 * 16 14 12 19 19 H 1.48499 * 109.46978 * 149.72477 * 16 14 12 20 20 C 1.34833 * 108.21156 * 0.22242 * 4 3 2 21 21 C 1.36437 * 107.60585 * 359.63841 * 20 4 3 22 22 C 1.48474 * 126.22128 * 180.13424 * 21 20 4 23 23 C 1.39298 * 120.11641 * 129.98948 * 22 21 20 24 24 C 1.38037 * 119.88070 * 179.69999 * 23 22 21 25 25 C 1.38314 * 120.11359 * 0.57826 * 24 23 22 26 26 C 1.38320 * 120.23995 * 359.72137 * 25 24 23 27 27 C 1.38024 * 120.11528 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46793 * 90.03161 * 1 2 3 29 29 H 1.08998 * 109.47188 * 210.02876 * 1 2 3 30 30 H 1.09000 * 109.47432 * 330.03302 * 1 2 3 31 31 H 1.08994 * 109.47506 * 185.02244 * 5 4 3 32 32 H 1.09003 * 109.47128 * 65.01765 * 5 4 3 33 33 H 1.09000 * 109.47127 * 174.97478 * 11 9 8 34 34 H 1.08997 * 109.46920 * 294.97504 * 11 9 8 35 35 H 1.09000 * 109.47026 * 54.97471 * 11 9 8 36 36 H 0.96995 * 120.00010 * 355.26674 * 15 14 12 37 37 H 1.07995 * 126.19731 * 179.77303 * 20 4 3 38 38 H 1.08004 * 120.05888 * 359.97438 * 23 22 21 39 39 H 1.07992 * 119.94173 * 180.29583 * 24 23 22 40 40 H 1.08002 * 119.88131 * 179.69668 * 25 24 23 41 41 H 1.08001 * 119.94076 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.05928 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0578 0.0000 4 7 3.6101 0.6385 0.0006 5 6 4.7850 1.5135 0.0003 6 6 4.7010 2.4668 -1.1640 7 8 3.7569 2.4196 -1.9165 8 8 5.6751 3.3681 -1.3650 9 6 5.5285 4.2537 -2.5062 10 1 4.4695 4.4188 -2.7044 11 6 6.1836 3.6168 -3.7335 12 6 6.1953 5.5719 -2.2082 13 1 6.7547 5.6993 -1.2932 14 6 6.0912 6.6152 -3.1035 15 7 6.7514 7.7326 -2.8908 16 14 5.0065 6.4443 -4.6147 17 1 5.8064 5.8945 -5.7386 18 1 3.8792 5.5259 -4.3136 19 1 4.4716 7.7769 -4.9933 20 6 3.6286 -0.7097 -0.0040 21 6 2.3339 -1.1402 0.0007 22 6 1.8793 -2.5537 0.0010 23 6 0.9319 -2.9830 0.9275 24 6 0.5081 -4.2967 0.9194 25 6 1.0314 -5.1889 0.0011 26 6 1.9770 -4.7693 -0.9171 27 6 2.4030 -3.4565 -0.9216 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5133 31 1 5.6879 0.9096 -0.0891 32 1 4.8169 2.0793 0.9314 33 1 5.9967 4.2387 -4.6090 34 1 7.2580 3.5336 -3.5697 35 1 5.7629 2.6245 -3.8961 36 1 7.2565 7.8490 -2.0710 37 1 4.5087 -1.3355 -0.0083 38 1 0.5263 -2.2882 1.6481 39 1 -0.2298 -4.6294 1.6341 40 1 0.7008 -6.2171 0.0013 41 1 2.3826 -5.4702 -1.6316 42 1 3.1411 -3.1298 -1.6393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774095335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:03 Heat of formation + Delta-G solvation = 14.212695 kcal Electronic energy + Delta-G solvation = -24902.753763 eV Core-core repulsion = 21235.647398 eV Total energy + Delta-G solvation = -3667.106365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44801 -39.74671 -38.96642 -36.11712 -34.18783 -33.32038 -32.18475 -31.18821 -30.77831 -29.98497 -28.63580 -26.39788 -24.97304 -23.09236 -22.62769 -21.83969 -20.61881 -20.08307 -19.47064 -17.91842 -17.41148 -17.19568 -16.50892 -15.84859 -15.68677 -15.20348 -15.11408 -14.51426 -14.26916 -13.94630 -13.73863 -13.55222 -13.24975 -13.14332 -12.92463 -12.85322 -12.63567 -12.51530 -12.18681 -12.09014 -11.73011 -11.68134 -11.49785 -11.24303 -10.71896 -10.54540 -10.20066 -10.15848 -9.89004 -9.73053 -9.38741 -9.23402 -9.11670 -8.82575 -8.63422 -8.13234 -6.66450 -4.32119 1.02408 1.22583 1.80769 2.23162 2.62680 2.68496 3.26581 3.30242 3.37854 3.49802 3.65485 4.31717 4.37069 4.61129 4.75415 4.75586 4.78584 4.88449 4.97107 5.02332 5.10381 5.12914 5.25931 5.31391 5.36797 5.56425 5.65525 5.75960 5.78567 5.89095 5.95450 6.10947 6.23591 6.25841 6.32467 6.35307 6.45127 6.54213 6.60320 6.80486 6.83524 6.99806 7.26716 7.68427 7.69992 8.16873 8.34024 8.74719 9.37510 10.76425 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002563 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.437293 B =10921.659244 C =10995.884029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.085 3.915 3 N -0.260 5.260 4 N -0.359 5.359 5 C 0.142 3.858 6 C 0.436 3.564 7 O -0.492 6.492 8 O -0.344 6.344 9 C 0.191 3.809 10 H 0.047 0.953 11 C -0.166 4.166 12 C -0.600 4.600 13 H 0.070 0.930 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 1.046 2.954 17 H -0.278 1.278 18 H -0.275 1.275 19 H -0.282 1.282 20 C 0.075 3.925 21 C -0.207 4.207 22 C 0.010 3.990 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.115 4.115 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.271 0.729 37 H 0.177 0.823 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -25.062 7.827 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 N -0.080 5.080 4 N -0.140 5.140 5 C 0.019 3.981 6 C 0.275 3.725 7 O -0.379 6.379 8 O -0.259 6.259 9 C 0.138 3.862 10 H 0.064 0.936 11 C -0.223 4.223 12 C -0.638 4.638 13 H 0.088 0.912 14 C -0.169 4.169 15 N -0.532 5.532 16 Si 0.874 3.126 17 H -0.205 1.205 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.071 4.071 21 C -0.219 4.219 22 C 0.009 3.991 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.133 4.133 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.194 0.806 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.849 -22.826 6.187 25.618 hybrid contribution 0.722 -1.591 1.224 2.133 sum -9.127 -24.417 7.412 27.100 Atomic orbital electron populations 1.20236 0.86655 1.03149 1.03255 1.22432 0.96891 0.89616 0.99418 1.77437 0.85789 1.22157 1.22644 1.47892 1.05220 1.04111 1.56745 1.21078 0.85697 0.92642 0.98722 1.23224 0.81835 0.81638 0.85757 1.90688 1.32755 1.68812 1.45657 1.86511 1.45072 1.43494 1.50830 1.21125 0.98186 0.87134 0.79784 0.93578 1.22464 1.01890 0.98873 0.99121 1.21988 1.36978 0.94814 1.10015 0.91211 1.25681 0.96946 0.92116 1.02137 1.70820 1.28727 1.26524 1.27165 0.83993 0.76725 0.76340 0.75551 1.20519 1.20030 1.20835 1.22509 0.98995 0.84336 1.01266 1.18655 0.91642 0.92740 1.18844 1.18036 0.95922 0.90300 0.94833 1.21211 0.97656 0.95795 0.98485 1.21071 1.00034 0.93489 0.99017 1.21140 0.97873 0.99543 0.96256 1.21073 0.97726 0.95803 0.98931 1.21252 1.00458 0.93157 0.98456 0.90443 0.90422 0.90741 0.84768 0.85630 0.92132 0.92005 0.94800 0.91834 0.80599 0.85949 0.86157 0.86380 0.86178 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.26 36.01 0.37 -0.44 16 2 C 0.08 1.20 7.23 -82.10 -0.59 0.60 16 3 N -0.26 -4.41 11.60 33.84 0.39 -4.02 16 4 N -0.36 -5.22 3.39 -62.28 -0.21 -5.43 16 5 C 0.14 1.88 7.09 -5.19 -0.04 1.84 16 6 C 0.44 8.50 7.96 36.01 0.29 8.79 16 7 O -0.49 -11.32 14.92 -18.75 -0.28 -11.59 16 8 O -0.34 -7.66 9.86 -39.25 -0.39 -8.05 16 9 C 0.19 4.84 2.14 -27.88 -0.06 4.78 16 10 H 0.05 1.25 5.66 -51.93 -0.29 0.95 16 11 C -0.17 -3.74 9.14 37.16 0.34 -3.40 16 12 C -0.60 -17.12 9.25 -34.44 -0.32 -17.44 16 13 H 0.07 2.12 8.04 -52.49 -0.42 1.69 16 14 C 0.04 1.06 5.43 -17.82 -0.10 0.97 16 15 N -0.90 -27.24 13.70 55.43 0.76 -26.48 16 16 Si 1.05 25.52 25.28 -169.99 -4.30 21.23 16 17 H -0.28 -6.34 6.82 56.52 0.39 -5.96 16 18 H -0.27 -6.54 6.35 56.52 0.36 -6.18 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.07 0.88 11.31 -16.88 -0.19 0.69 16 21 C -0.21 -2.58 5.58 -105.34 -0.59 -3.17 16 22 C 0.01 0.11 5.61 -104.89 -0.59 -0.48 16 23 C -0.11 -1.05 8.56 -39.26 -0.34 -1.38 16 24 C -0.12 -0.94 10.04 -39.63 -0.40 -1.34 16 25 C -0.13 -1.01 10.04 -39.52 -0.40 -1.41 16 26 C -0.12 -0.98 10.03 -39.63 -0.40 -1.38 16 27 C -0.11 -1.12 9.70 -39.26 -0.38 -1.50 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.67 5.86 -51.93 -0.30 0.36 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.13 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.36 4.41 -51.93 -0.23 1.13 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 8.14 8.72 -40.82 -0.36 7.78 16 37 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.12 1.02 7.12 -52.48 -0.37 0.65 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -35.45 357.27 -7.51 -42.95 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.48 Total: 0.27 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.39 Total: -14.25 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.94 Total: -35.93 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.67 Total: -19.65 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.30 Total: 21.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.45 -7.51 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774095335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.167 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds