Wall clock time and date at job start Tue Mar 31 2020 11:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30667 * 125.95126 * 2 1 4 4 N 1.40011 * 108.52580 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.89740 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.46930 * 305.02331 * 5 4 3 7 7 O 1.20823 * 119.99630 * 359.97438 * 6 5 4 8 8 O 1.34226 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.45198 * 116.99837 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47255 * 29.99913 * 9 8 6 11 11 C 1.53002 * 109.47247 * 270.00234 * 9 8 6 12 12 C 1.50697 * 109.47388 * 150.00172 * 9 8 6 13 13 H 1.07999 * 119.99662 * 5.37503 * 12 9 8 14 14 C 1.37880 * 120.00482 * 185.37454 * 12 9 8 15 15 N 1.31515 * 120.00110 * 184.89557 * 14 12 9 16 16 Si 1.86800 * 119.99570 * 5.16715 * 14 12 9 17 17 H 1.48499 * 109.47189 * 269.72164 * 16 14 12 18 18 H 1.48497 * 109.47262 * 29.72703 * 16 14 12 19 19 H 1.48499 * 109.46978 * 149.72477 * 16 14 12 20 20 C 1.34833 * 108.21156 * 0.22242 * 4 3 2 21 21 C 1.36437 * 107.60585 * 359.63841 * 20 4 3 22 22 C 1.48474 * 126.22128 * 180.13424 * 21 20 4 23 23 C 1.39298 * 120.11641 * 129.98948 * 22 21 20 24 24 C 1.38037 * 119.88070 * 179.69999 * 23 22 21 25 25 C 1.38314 * 120.11359 * 0.57826 * 24 23 22 26 26 C 1.38320 * 120.23995 * 359.72137 * 25 24 23 27 27 C 1.38024 * 120.11528 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46793 * 90.03161 * 1 2 3 29 29 H 1.08998 * 109.47188 * 210.02876 * 1 2 3 30 30 H 1.09000 * 109.47432 * 330.03302 * 1 2 3 31 31 H 1.08994 * 109.47506 * 185.02244 * 5 4 3 32 32 H 1.09003 * 109.47128 * 65.01765 * 5 4 3 33 33 H 1.09000 * 109.47127 * 174.97478 * 11 9 8 34 34 H 1.08997 * 109.46920 * 294.97504 * 11 9 8 35 35 H 1.09000 * 109.47026 * 54.97471 * 11 9 8 36 36 H 0.96995 * 120.00010 * 355.26674 * 15 14 12 37 37 H 1.07995 * 126.19731 * 179.77303 * 20 4 3 38 38 H 1.08004 * 120.05888 * 359.97438 * 23 22 21 39 39 H 1.07992 * 119.94173 * 180.29583 * 24 23 22 40 40 H 1.08002 * 119.88131 * 179.69668 * 25 24 23 41 41 H 1.08001 * 119.94076 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.05928 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0578 0.0000 4 7 3.6101 0.6385 0.0006 5 6 4.7850 1.5135 0.0003 6 6 4.7010 2.4668 -1.1640 7 8 3.7569 2.4196 -1.9165 8 8 5.6751 3.3681 -1.3650 9 6 5.5285 4.2537 -2.5062 10 1 4.4695 4.4188 -2.7044 11 6 6.1836 3.6168 -3.7335 12 6 6.1953 5.5719 -2.2082 13 1 6.7547 5.6993 -1.2932 14 6 6.0912 6.6152 -3.1035 15 7 6.7514 7.7326 -2.8908 16 14 5.0065 6.4443 -4.6147 17 1 5.8064 5.8945 -5.7386 18 1 3.8792 5.5259 -4.3136 19 1 4.4716 7.7769 -4.9933 20 6 3.6286 -0.7097 -0.0040 21 6 2.3339 -1.1402 0.0007 22 6 1.8793 -2.5537 0.0010 23 6 0.9319 -2.9830 0.9275 24 6 0.5081 -4.2967 0.9194 25 6 1.0314 -5.1889 0.0011 26 6 1.9770 -4.7693 -0.9171 27 6 2.4030 -3.4565 -0.9216 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5133 31 1 5.6879 0.9096 -0.0891 32 1 4.8169 2.0793 0.9314 33 1 5.9967 4.2387 -4.6090 34 1 7.2580 3.5336 -3.5697 35 1 5.7629 2.6245 -3.8961 36 1 7.2565 7.8490 -2.0710 37 1 4.5087 -1.3355 -0.0083 38 1 0.5263 -2.2882 1.6481 39 1 -0.2298 -4.6294 1.6341 40 1 0.7008 -6.2171 0.0013 41 1 2.3826 -5.4702 -1.6316 42 1 3.1411 -3.1298 -1.6393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774095335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:03 Heat of formation + Delta-G solvation = -6.983541 kcal Electronic energy + Delta-G solvation = -24903.672901 eV Core-core repulsion = 21235.647398 eV Total energy + Delta-G solvation = -3668.025503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.45542 -41.33688 -39.65127 -37.84311 -35.46457 -35.19506 -32.98725 -32.68495 -31.79173 -31.09229 -29.50163 -27.49365 -26.99611 -24.11771 -23.36074 -23.17578 -21.73355 -21.45612 -20.62266 -19.93894 -18.85470 -18.35064 -17.50412 -17.28084 -17.01968 -16.08737 -15.97541 -15.82781 -15.49296 -15.13987 -14.94450 -14.80436 -14.61713 -14.26690 -14.18795 -13.95286 -13.89357 -13.67441 -13.45122 -13.40558 -13.13316 -13.01615 -12.64160 -12.21652 -12.13399 -11.91842 -11.86723 -11.64606 -11.61063 -11.40472 -10.96795 -10.82613 -10.33049 -10.15483 -9.74609 -8.99433 -8.94009 -6.63465 0.32020 0.59612 0.81614 1.10945 1.24635 1.31718 1.43282 1.59360 1.76458 1.90792 2.28917 2.88264 2.99420 3.45855 3.62367 3.81990 3.91546 4.05321 4.07851 4.16407 4.19900 4.23286 4.31642 4.38870 4.41537 4.51209 4.66636 4.69750 4.71998 4.72227 4.87987 4.93413 4.97140 5.19297 5.21618 5.26083 5.36228 5.52949 5.69645 5.70905 5.71882 5.79611 5.88260 5.93137 6.19710 6.32511 6.68878 6.76365 7.15017 8.45752 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002563 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.437293 B =10921.659244 C =10995.884029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.076 3.924 3 N -0.321 5.321 4 N -0.372 5.372 5 C 0.151 3.849 6 C 0.432 3.568 7 O -0.530 6.530 8 O -0.353 6.353 9 C 0.191 3.809 10 H 0.026 0.974 11 C -0.158 4.158 12 C -0.608 4.608 13 H 0.037 0.963 14 C -0.007 4.007 15 N -0.924 5.924 16 Si 1.080 2.920 17 H -0.246 1.246 18 H -0.270 1.270 19 H -0.278 1.278 20 C 0.080 3.920 21 C -0.214 4.214 22 C -0.007 4.007 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.126 4.126 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.145 0.855 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.260 0.740 37 H 0.216 0.784 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -28.435 7.588 30.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 N -0.142 5.142 4 N -0.153 5.153 5 C 0.029 3.971 6 C 0.274 3.726 7 O -0.419 6.419 8 O -0.268 6.268 9 C 0.137 3.863 10 H 0.044 0.956 11 C -0.216 4.216 12 C -0.645 4.645 13 H 0.055 0.945 14 C -0.207 4.207 15 N -0.559 5.559 16 Si 0.901 3.099 17 H -0.171 1.171 18 H -0.195 1.195 19 H -0.204 1.204 20 C -0.064 4.064 21 C -0.225 4.225 22 C -0.009 4.009 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.144 4.144 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.203 0.797 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.233 0.767 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.246 -26.229 5.974 28.786 hybrid contribution 0.802 -0.664 1.432 1.770 sum -9.444 -26.894 7.405 29.450 Atomic orbital electron populations 1.20331 0.85226 1.04170 1.03483 1.22959 0.98078 0.89862 0.98309 1.77352 0.87422 1.24186 1.25261 1.47979 1.04637 1.05085 1.57602 1.21373 0.87353 0.92335 0.96053 1.24446 0.80246 0.81157 0.86740 1.90669 1.33896 1.69790 1.47509 1.86486 1.46395 1.44047 1.49907 1.20802 0.96664 0.86972 0.81861 0.95588 1.22327 1.02056 0.99653 0.97523 1.22126 1.36547 0.97082 1.08778 0.94485 1.26993 0.97264 0.91529 1.04894 1.70919 1.30164 1.27721 1.27058 0.83573 0.75796 0.76877 0.73637 1.17080 1.19515 1.20358 1.23177 1.00301 0.83522 0.99418 1.18944 0.91756 0.93320 1.18479 1.18056 0.97182 0.89530 0.96099 1.21333 0.97537 0.96634 0.98431 1.21367 1.00159 0.92932 0.99366 1.21493 0.97151 1.00689 0.95517 1.21346 0.97712 0.95575 0.99388 1.21360 1.00833 0.93755 0.98483 0.90497 0.88254 0.90850 0.79660 0.83773 0.91950 0.91381 0.92806 0.93099 0.76704 0.85616 0.83988 0.84049 0.84328 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.26 71.24 0.73 -0.85 16 2 C 0.08 2.12 7.23 43.37 0.31 2.44 16 3 N -0.32 -10.96 11.60 -46.85 -0.54 -11.51 16 4 N -0.37 -10.31 3.39 -350.95 -1.19 -11.50 16 5 C 0.15 3.70 7.09 85.64 0.61 4.31 16 6 C 0.43 16.59 7.96 71.24 0.57 17.16 16 7 O -0.53 -24.46 14.92 21.97 0.33 -24.14 16 8 O -0.35 -15.68 9.86 -51.38 -0.51 -16.18 16 9 C 0.19 9.70 2.14 29.85 0.06 9.76 16 10 H 0.03 1.43 5.66 -2.39 -0.01 1.42 16 11 C -0.16 -6.91 9.14 71.98 0.66 -6.25 16 12 C -0.61 -35.47 9.25 25.60 0.24 -35.23 16 13 H 0.04 2.34 8.04 -2.91 -0.02 2.32 16 14 C -0.01 -0.41 5.43 84.66 0.46 0.05 16 15 N -0.92 -57.16 13.70 21.45 0.29 -56.87 16 16 Si 1.08 51.00 25.28 68.60 1.73 52.73 16 17 H -0.25 -10.34 6.82 99.48 0.68 -9.66 16 18 H -0.27 -12.47 6.35 99.48 0.63 -11.84 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 C 0.08 1.74 11.31 83.81 0.95 2.69 16 21 C -0.21 -5.07 5.58 -20.33 -0.11 -5.18 16 22 C -0.01 -0.15 5.61 -20.04 -0.11 -0.26 16 23 C -0.12 -2.02 8.56 22.48 0.19 -1.83 16 24 C -0.12 -1.59 10.04 22.24 0.22 -1.37 16 25 C -0.13 -1.63 10.04 22.31 0.22 -1.41 16 26 C -0.12 -1.72 10.03 22.24 0.22 -1.50 16 27 C -0.13 -2.20 9.70 22.48 0.22 -1.99 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.10 1.62 5.86 -2.39 -0.01 1.61 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.19 2.56 8.07 -2.39 -0.02 2.54 16 32 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.67 4.41 -2.39 -0.01 2.66 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.26 16.16 8.72 -92.71 -0.81 15.35 16 37 H 0.22 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.13 1.91 7.12 -2.91 -0.02 1.89 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.12 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -80.02 357.27 6.45 -73.58 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.89 Total: 13.34 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 5.44 Total: -19.45 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.44 Total: -79.88 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.18 Total: -40.32 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.73 Total: 52.73 kcal Total: -80.02 6.45 -73.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774095335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.592 kcal (2) G-P(sol) polarization free energy of solvation -80.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds