Wall clock time and date at job start Tue Mar 31 2020 11:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12837 * 2 1 4 4 C 1.39871 * 107.92142 * 180.14521 * 3 2 1 5 5 C 1.50704 * 125.90214 * 179.86443 * 4 3 2 6 6 O 1.45203 * 109.46602 * 359.71151 * 5 4 3 7 7 C 1.34232 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99544 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 N 1.30834 * 108.20226 * 359.59791 * 4 3 2 25 25 N 1.34952 * 126.12538 * 179.70425 * 2 1 3 26 26 C 1.46496 * 126.03848 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47336 * 270.29493 * 1 2 3 28 28 H 1.09009 * 109.46718 * 30.29713 * 1 2 3 29 29 H 1.08998 * 109.47132 * 150.28923 * 1 2 3 30 30 H 1.08000 * 126.04290 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47091 * 239.71833 * 5 4 3 32 32 H 1.08994 * 109.47137 * 119.70911 * 5 4 3 33 33 H 1.09001 * 109.46892 * 59.99945 * 9 7 6 34 34 H 1.08991 * 109.47294 * 299.99955 * 9 7 6 35 35 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 37 37 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 39 39 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 40 40 H 1.08997 * 109.47221 * 270.03007 * 26 25 2 41 41 H 1.09002 * 109.46975 * 30.02885 * 26 25 2 42 42 H 1.08997 * 109.47010 * 150.02222 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8544 1.5394 -0.0074 6 8 4.4438 2.9321 -0.0142 7 6 5.4187 3.8548 -0.0191 8 8 6.5768 3.5100 -0.0172 9 6 5.0689 5.3206 -0.0257 10 6 6.3343 6.1391 -0.0295 11 6 6.8617 6.6014 1.1548 12 6 8.0218 7.3600 1.1535 13 6 8.6677 7.6560 -0.0372 14 6 8.1620 7.1991 -1.2324 15 6 6.9847 6.4280 -1.2432 16 6 6.4561 5.9524 -2.4654 17 1 5.8393 5.0659 -2.4783 18 6 6.7322 6.6301 -3.6581 19 7 7.0239 7.9052 -3.6335 20 14 6.6843 5.7142 -5.2855 21 1 7.0107 6.6510 -6.3906 22 1 7.6775 4.6106 -5.2618 23 1 5.3258 5.1532 -5.4979 24 7 3.6334 -0.6524 0.0034 25 7 2.3026 -1.0900 0.0056 26 6 1.8539 -2.4846 0.0134 27 1 -0.3634 0.0053 1.0276 28 1 -0.3633 0.8874 -0.5185 29 1 -0.3633 -0.8925 -0.5093 30 1 1.9741 2.1211 0.0004 31 1 5.4500 1.3319 -0.8964 32 1 5.4498 1.3405 0.8836 33 1 4.4853 5.5588 0.8636 34 1 4.4843 5.5506 -0.9163 35 1 6.3672 6.3763 2.0882 36 1 8.4259 7.7228 2.0870 37 1 9.5713 8.2476 -0.0264 38 1 8.6669 7.4305 -2.1586 39 1 6.9665 8.3999 -2.8011 40 1 1.7425 -2.8247 1.0429 41 1 0.8955 -2.5607 -0.5002 42 1 2.5898 -3.1058 -0.4970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777161923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:51 Heat of formation + Delta-G solvation = -0.293669 kcal Electronic energy + Delta-G solvation = -25014.950150 eV Core-core repulsion = 21347.214742 eV Total energy + Delta-G solvation = -3667.735408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.41318 -39.88017 -37.83058 -35.98650 -33.90043 -33.86957 -32.17834 -31.94123 -29.25416 -29.06363 -27.22997 -27.00324 -25.34990 -24.84191 -21.47124 -20.95731 -20.33376 -19.79568 -19.33328 -17.73358 -17.08981 -16.70785 -16.32183 -15.73115 -15.59603 -14.89933 -14.46748 -14.27426 -14.15064 -13.85027 -13.79587 -13.51766 -13.28165 -13.10538 -12.66492 -12.44191 -12.39359 -12.29833 -12.04226 -11.91458 -11.67144 -11.26857 -11.21417 -10.86728 -10.67198 -10.48551 -10.46281 -10.37509 -9.79386 -9.67865 -9.39461 -9.17245 -8.96633 -8.57864 -7.59873 -7.53534 -7.14544 -4.44976 1.67831 2.18403 2.64857 2.65872 2.84293 2.93104 3.17850 3.27177 3.31226 3.39021 4.03086 4.31692 4.41133 4.58383 4.72100 4.78469 4.87806 5.08628 5.18947 5.31488 5.37256 5.45119 5.51037 5.54227 5.68473 5.75480 5.88940 5.97274 6.14191 6.16698 6.33061 6.34261 6.49429 6.64591 6.87179 6.93119 6.98293 7.18328 7.40289 7.57238 7.67073 7.81191 7.83248 7.93419 8.18224 8.31871 8.44513 8.75563 8.89952 10.06026 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003268 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.867518 B = 8565.362794 C = 9743.986901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.074 3.926 3 C -0.245 4.245 4 C 0.078 3.922 5 C 0.150 3.850 6 O -0.360 6.360 7 C 0.461 3.539 8 O -0.491 6.491 9 C -0.038 4.038 10 C -0.199 4.199 11 C -0.064 4.064 12 C -0.254 4.254 13 C -0.083 4.083 14 C -0.215 4.215 15 C 0.117 3.883 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.042 3.958 19 N -0.795 5.795 20 Si 1.059 2.941 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.275 1.275 24 N -0.291 5.291 25 N -0.375 5.375 26 C 0.102 3.898 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.300 0.700 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.689 -14.022 4.909 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.274 4.274 4 C -0.087 4.087 5 C 0.074 3.926 6 O -0.278 6.278 7 C 0.304 3.696 8 O -0.376 6.376 9 C -0.076 4.076 10 C -0.201 4.201 11 C -0.082 4.082 12 C -0.273 4.273 13 C -0.102 4.102 14 C -0.234 4.234 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.418 5.418 20 Si 0.883 3.117 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.201 1.201 24 N -0.115 5.115 25 N -0.159 5.159 26 C -0.039 4.039 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.389 -15.118 3.277 19.819 hybrid contribution -0.527 0.261 1.740 1.837 sum -12.916 -14.858 5.017 20.316 Atomic orbital electron populations 1.20437 0.87174 1.03844 1.03289 1.21135 0.94738 0.87227 1.02144 1.21128 0.91077 0.99541 1.15658 1.21797 0.95563 0.91385 0.99967 1.20615 0.90865 0.77449 1.03664 1.86462 1.40554 1.15585 1.85171 1.24488 0.83686 0.89268 0.72177 1.90658 1.21013 1.81941 1.43940 1.19955 0.98774 0.84500 1.04343 1.19003 0.98268 1.08778 0.94014 1.20390 0.95433 0.96893 0.95463 1.20275 1.00641 1.10085 0.96315 1.20630 0.97793 0.98470 0.93260 1.21153 0.98429 1.07123 0.96700 1.17402 0.89861 0.89301 0.92040 1.20487 1.29637 1.11914 0.92419 0.90894 1.26943 0.91246 0.95404 1.04457 1.70456 1.29774 1.07845 1.33741 0.83724 0.78026 0.75997 0.73988 1.19799 1.19981 1.20061 1.77274 0.96530 1.11382 1.26280 1.48383 1.03528 1.05987 1.57961 1.21811 1.00921 0.77932 1.03237 0.90211 0.89388 0.91307 0.82729 0.89323 0.89564 0.89250 0.87410 0.89335 0.89296 0.89261 0.87639 0.88649 0.90837 0.89567 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.12 36.01 0.36 -0.21 16 2 C 0.07 0.82 6.93 -82.26 -0.57 0.25 16 3 C -0.25 -3.32 10.06 -40.01 -0.40 -3.72 16 4 C 0.08 1.20 7.19 -82.40 -0.59 0.61 16 5 C 0.15 2.43 6.09 36.01 0.22 2.65 16 6 O -0.36 -6.33 9.56 -39.26 -0.38 -6.70 16 7 C 0.46 9.41 7.59 36.00 0.27 9.68 16 8 O -0.49 -11.66 15.78 -18.75 -0.30 -11.95 16 9 C -0.04 -0.76 5.29 -29.03 -0.15 -0.92 16 10 C -0.20 -4.72 4.43 -103.91 -0.46 -5.19 16 11 C -0.06 -1.43 9.66 -39.66 -0.38 -1.82 16 12 C -0.25 -5.76 10.05 -39.29 -0.39 -6.16 16 13 C -0.08 -1.97 10.02 -39.66 -0.40 -2.37 16 14 C -0.21 -5.59 7.95 -38.87 -0.31 -5.90 16 15 C 0.12 3.07 5.30 -106.82 -0.57 2.50 16 16 C -0.52 -13.54 8.08 -37.74 -0.30 -13.85 16 17 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16 18 C 0.04 1.06 4.94 -17.34 -0.09 0.97 16 19 N -0.80 -20.91 12.31 55.55 0.68 -20.22 16 20 Si 1.06 21.96 30.00 -169.99 -5.10 16.86 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 24 N -0.29 -4.37 12.58 33.67 0.42 -3.95 16 25 N -0.37 -4.39 4.01 -63.89 -0.26 -4.64 16 26 C 0.10 0.68 11.27 59.84 0.67 1.35 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.32 7.08 -51.93 -0.37 -0.05 16 30 H 0.16 1.96 7.90 -52.49 -0.41 1.55 16 31 H 0.09 1.47 8.13 -51.93 -0.42 1.04 16 32 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 34 H 0.11 2.12 7.06 -51.93 -0.37 1.76 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.11 2.82 6.49 -52.49 -0.34 2.48 16 39 H 0.30 8.05 6.68 -40.82 -0.27 7.78 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.34 7.05 -51.93 -0.37 -0.03 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.24 360.59 -8.08 -40.31 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.50 Total: 6.96 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.09 Total: -22.10 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.85 Total: -28.81 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.67 Total: -18.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.10 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.24 -8.08 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777161923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.020 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds