Wall clock time and date at job start Tue Mar 31 2020 11:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12837 * 2 1 4 4 C 1.39871 * 107.92142 * 180.14521 * 3 2 1 5 5 C 1.50704 * 125.90214 * 179.86443 * 4 3 2 6 6 O 1.45203 * 109.46602 * 359.71151 * 5 4 3 7 7 C 1.34232 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99544 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 N 1.30834 * 108.20226 * 359.59791 * 4 3 2 25 25 N 1.34952 * 126.12538 * 179.70425 * 2 1 3 26 26 C 1.46496 * 126.03848 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47336 * 270.29493 * 1 2 3 28 28 H 1.09009 * 109.46718 * 30.29713 * 1 2 3 29 29 H 1.08998 * 109.47132 * 150.28923 * 1 2 3 30 30 H 1.08000 * 126.04290 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47091 * 239.71833 * 5 4 3 32 32 H 1.08994 * 109.47137 * 119.70911 * 5 4 3 33 33 H 1.09001 * 109.46892 * 59.99945 * 9 7 6 34 34 H 1.08991 * 109.47294 * 299.99955 * 9 7 6 35 35 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 37 37 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 39 39 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 40 40 H 1.08997 * 109.47221 * 270.03007 * 26 25 2 41 41 H 1.09002 * 109.46975 * 30.02885 * 26 25 2 42 42 H 1.08997 * 109.47010 * 150.02222 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8544 1.5394 -0.0074 6 8 4.4438 2.9321 -0.0142 7 6 5.4187 3.8548 -0.0191 8 8 6.5768 3.5100 -0.0172 9 6 5.0689 5.3206 -0.0257 10 6 6.3343 6.1391 -0.0295 11 6 6.8617 6.6014 1.1548 12 6 8.0218 7.3600 1.1535 13 6 8.6677 7.6560 -0.0372 14 6 8.1620 7.1991 -1.2324 15 6 6.9847 6.4280 -1.2432 16 6 6.4561 5.9524 -2.4654 17 1 5.8393 5.0659 -2.4783 18 6 6.7322 6.6301 -3.6581 19 7 7.0239 7.9052 -3.6335 20 14 6.6843 5.7142 -5.2855 21 1 7.0107 6.6510 -6.3906 22 1 7.6775 4.6106 -5.2618 23 1 5.3258 5.1532 -5.4979 24 7 3.6334 -0.6524 0.0034 25 7 2.3026 -1.0900 0.0056 26 6 1.8539 -2.4846 0.0134 27 1 -0.3634 0.0053 1.0276 28 1 -0.3633 0.8874 -0.5185 29 1 -0.3633 -0.8925 -0.5093 30 1 1.9741 2.1211 0.0004 31 1 5.4500 1.3319 -0.8964 32 1 5.4498 1.3405 0.8836 33 1 4.4853 5.5588 0.8636 34 1 4.4843 5.5506 -0.9163 35 1 6.3672 6.3763 2.0882 36 1 8.4259 7.7228 2.0870 37 1 9.5713 8.2476 -0.0264 38 1 8.6669 7.4305 -2.1586 39 1 6.9665 8.3999 -2.8011 40 1 1.7425 -2.8247 1.0429 41 1 0.8955 -2.5607 -0.5002 42 1 2.5898 -3.1058 -0.4970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777161923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:51 Heat of formation + Delta-G solvation = -17.464374 kcal Electronic energy + Delta-G solvation = -25015.694728 eV Core-core repulsion = 21347.214742 eV Total energy + Delta-G solvation = -3668.479986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.37430 -41.47135 -39.63687 -37.56683 -35.76036 -34.83650 -33.68375 -32.91864 -31.13175 -30.27449 -28.60273 -27.96084 -26.88741 -26.15678 -23.05601 -22.83453 -21.52887 -21.21456 -20.47680 -19.60784 -18.57438 -17.78858 -17.75292 -17.02463 -16.69211 -16.63638 -16.15696 -15.93703 -15.47063 -15.08135 -14.85603 -14.72911 -14.25596 -14.20480 -13.95013 -13.88394 -13.63117 -13.33361 -13.27479 -13.21615 -13.01141 -12.84578 -12.78454 -12.62577 -12.26098 -11.98438 -11.91855 -11.68018 -11.52038 -11.47847 -11.23759 -10.85233 -10.13248 -9.51591 -9.48355 -9.45629 -9.08720 -6.42909 0.75311 0.78418 0.98230 1.29458 1.32517 1.47710 1.62147 1.62611 1.76391 1.91666 2.30572 2.70213 3.35236 3.57929 3.69292 3.92308 3.98266 4.11029 4.12945 4.26745 4.27405 4.37109 4.40824 4.47358 4.55349 4.62149 4.67990 4.70513 4.78072 4.83465 4.92898 5.06875 5.09702 5.20501 5.29427 5.37185 5.48406 5.49615 5.78412 5.83036 5.95817 6.04314 6.10871 6.26950 6.43141 6.57753 6.81492 6.86090 6.98860 8.07358 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003268 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.867518 B = 8565.362794 C = 9743.986901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.090 3.910 3 C -0.277 4.277 4 C 0.057 3.943 5 C 0.153 3.847 6 O -0.348 6.348 7 C 0.469 3.531 8 O -0.531 6.531 9 C -0.038 4.038 10 C -0.204 4.204 11 C -0.073 4.073 12 C -0.250 4.250 13 C -0.092 4.092 14 C -0.244 4.244 15 C 0.088 3.912 16 C -0.544 4.544 17 H 0.068 0.932 18 C 0.008 3.992 19 N -0.816 5.816 20 Si 1.104 2.896 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.255 1.255 24 N -0.325 5.325 25 N -0.372 5.372 26 C 0.090 3.910 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.286 0.714 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 -15.530 6.020 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.306 4.306 4 C -0.107 4.107 5 C 0.077 3.923 6 O -0.264 6.264 7 C 0.314 3.686 8 O -0.419 6.419 9 C -0.075 4.075 10 C -0.206 4.206 11 C -0.091 4.091 12 C -0.269 4.269 13 C -0.110 4.110 14 C -0.263 4.263 15 C 0.085 3.915 16 C -0.572 4.572 17 H 0.086 0.914 18 C -0.209 4.209 19 N -0.439 5.439 20 Si 0.922 3.078 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.179 1.179 24 N -0.151 5.151 25 N -0.156 5.156 26 C -0.050 4.050 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.922 -16.637 4.408 22.779 hybrid contribution 0.189 0.631 1.582 1.714 sum -14.733 -16.006 5.990 22.564 Atomic orbital electron populations 1.20632 0.83469 1.05513 1.04873 1.21792 0.96737 0.86161 0.99195 1.21309 0.90785 1.00643 1.17854 1.21651 0.95741 0.91655 1.01625 1.20606 0.91857 0.76654 1.03214 1.86434 1.39358 1.16192 1.84446 1.24464 0.83290 0.89813 0.71069 1.90645 1.22607 1.82603 1.46009 1.19991 0.97519 0.83712 1.06236 1.19429 0.99165 1.08332 0.93632 1.20852 0.95533 0.96181 0.96490 1.20742 1.00264 1.08817 0.97092 1.20938 0.98668 0.98414 0.92976 1.21161 0.99195 1.08988 0.96956 1.17773 0.90397 0.89984 0.93341 1.20586 1.31011 1.12267 0.93337 0.91435 1.28161 0.90063 0.95373 1.07313 1.70552 1.32020 1.08480 1.32830 0.83171 0.79023 0.74972 0.70653 1.19155 1.20022 1.17862 1.77172 0.99121 1.11217 1.27561 1.48810 1.02459 1.07904 1.56390 1.22267 1.02408 0.75365 1.04931 0.88448 0.88626 0.88766 0.82633 0.90417 0.89535 0.85250 0.87452 0.85796 0.86049 0.87060 0.89688 0.90185 0.89142 0.86148 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.12 71.24 0.72 -0.06 16 2 C 0.09 1.78 6.93 41.40 0.29 2.07 16 3 C -0.28 -7.29 10.06 21.99 0.22 -7.07 16 4 C 0.06 1.76 7.19 43.10 0.31 2.07 16 5 C 0.15 5.08 6.09 71.24 0.43 5.51 16 6 O -0.35 -12.25 9.56 -51.44 -0.49 -12.74 16 7 C 0.47 19.15 7.59 71.23 0.54 19.69 16 8 O -0.53 -25.66 15.78 21.95 0.35 -25.31 16 9 C -0.04 -1.46 5.29 29.10 0.15 -1.31 16 10 C -0.20 -9.62 4.43 -19.40 -0.09 -9.71 16 11 C -0.07 -3.13 9.66 22.22 0.21 -2.92 16 12 C -0.25 -10.87 10.05 22.46 0.23 -10.64 16 13 C -0.09 -4.33 10.02 22.22 0.22 -4.11 16 14 C -0.24 -13.09 7.95 22.73 0.18 -12.91 16 15 C 0.09 4.73 5.30 -21.29 -0.11 4.61 16 16 C -0.54 -29.47 8.08 23.46 0.19 -29.28 16 17 H 0.07 3.61 6.73 -2.91 -0.02 3.59 16 18 C 0.01 0.41 4.94 85.25 0.42 0.83 16 19 N -0.82 -44.52 12.31 21.82 0.27 -44.25 16 20 Si 1.10 45.07 30.00 68.60 2.06 47.13 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 24 N -0.33 -9.72 12.58 -47.38 -0.60 -10.31 16 25 N -0.37 -7.99 4.01 -356.04 -1.43 -9.42 16 26 C 0.09 0.92 11.27 127.77 1.44 2.36 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.09 0.40 7.08 -2.39 -0.02 0.38 16 30 H 0.16 3.87 7.90 -2.91 -0.02 3.85 16 31 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16 32 H 0.09 2.82 8.13 -2.39 -0.02 2.80 16 33 H 0.13 3.94 8.05 -2.39 -0.02 3.92 16 34 H 0.11 4.22 7.06 -2.39 -0.02 4.21 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.08 4.80 6.49 -2.91 -0.02 4.78 16 39 H 0.29 16.12 6.68 -92.71 -0.62 15.50 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.12 0.42 7.05 -2.39 -0.02 0.40 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.04 360.59 6.70 -66.33 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 1.18 Total: 29.44 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 5.36 Total: -40.86 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -1.76 Total: -63.99 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.15 Total: -38.06 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.06 Total: 47.13 kcal Total: -73.04 6.70 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777161923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.869 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds