Wall clock time and date at job start Tue Mar 31 2020 10:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00506 * 2 1 4 4 C 1.39830 * 119.63857 * 0.29171 * 3 2 1 5 5 C 1.36032 * 121.02368 * 180.28092 * 4 3 2 6 6 C 1.40570 * 119.89321 * 359.45543 * 5 4 3 7 7 N 1.33827 * 120.76018 * 180.27492 * 6 5 4 8 8 C 1.30791 * 121.73486 * 179.97438 * 7 6 5 9 9 C 1.50706 * 119.23004 * 179.97438 * 8 7 6 10 10 C 1.40603 * 121.55115 * 359.97438 * 8 7 6 11 11 C 1.47759 * 120.27656 * 180.02562 * 10 8 7 12 12 O 1.21554 * 119.99981 * 6.28263 * 11 10 8 13 13 N 1.34783 * 119.99817 * 186.29008 * 11 10 8 14 14 C 1.46498 * 119.99500 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46892 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47125 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99845 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99775 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47132 * 120.00379 * 20 18 16 23 23 H 1.48496 * 109.47351 * 240.00537 * 20 18 16 24 24 C 1.39007 * 119.45210 * 0.02562 * 10 8 7 25 25 C 1.40552 * 117.96946 * 359.97438 * 24 10 8 26 26 C 1.36601 * 119.64761 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46378 * 299.99636 * 1 2 3 28 28 H 1.09001 * 109.47155 * 59.99287 * 1 2 3 29 29 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.48732 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.05130 * 179.72680 * 5 4 3 32 32 H 1.08997 * 109.47216 * 96.67510 * 9 8 7 33 33 H 1.08995 * 109.47457 * 216.68466 * 9 8 7 34 34 H 1.09007 * 109.46790 * 336.68150 * 9 8 7 35 35 H 0.96995 * 120.00488 * 359.97438 * 13 11 10 36 36 H 1.08994 * 109.47638 * 300.00020 * 14 13 11 37 37 H 1.09007 * 109.47310 * 60.00388 * 14 13 11 38 38 H 1.09001 * 109.47266 * 300.00279 * 15 14 13 39 39 H 1.08998 * 109.46654 * 60.00133 * 15 14 13 40 40 H 0.97007 * 119.99777 * 179.97438 * 19 18 16 41 41 H 1.07998 * 121.01565 * 180.02562 * 24 10 8 42 42 H 1.07998 * 120.20409 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2772 2.3787 0.0062 5 6 1.8654 3.6053 0.0006 6 6 3.2672 3.7101 0.0001 7 7 3.8640 4.9079 0.0002 8 6 5.1664 5.0276 0.0002 9 6 5.7789 6.4045 -0.0003 10 6 6.0087 3.9017 0.0006 11 6 7.4767 4.0696 0.0011 12 8 7.9616 5.1783 0.1164 13 7 8.2781 2.9934 -0.1264 14 6 9.7336 3.1600 -0.1264 15 6 10.4033 1.7933 -0.2833 16 6 11.9005 1.9647 -0.2839 17 1 12.3313 2.9499 -0.1822 18 6 12.7204 0.8637 -0.4134 19 7 12.1957 -0.3358 -0.5368 20 14 14.5762 1.0761 -0.4135 21 1 14.9098 2.5151 -0.2611 22 1 15.1621 0.3104 0.7159 23 1 15.1322 0.5717 -1.6948 24 6 5.4489 2.6293 0.0005 25 6 4.0472 2.5259 0.0005 26 6 3.4106 1.2737 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.1997 2.3058 0.0105 31 1 1.2563 4.4971 0.0011 32 1 6.0357 6.6883 1.0203 33 1 6.6795 6.4014 -0.6142 34 1 5.0642 7.1199 -0.4074 35 1 7.8912 2.1087 -0.2181 36 1 10.0255 3.8053 -0.9548 37 1 10.0476 3.6122 0.8145 38 1 10.1114 1.1483 0.5455 39 1 10.0893 1.3408 -1.2239 40 1 12.7725 -1.1104 -0.6283 41 1 6.0720 1.7472 0.0012 42 1 3.9964 0.3664 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784135308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:34 Heat of formation + Delta-G solvation = -26.474057 kcal Electronic energy + Delta-G solvation = -24616.655328 eV Core-core repulsion = 20947.784653 eV Total energy + Delta-G solvation = -3668.870675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32187 -39.93517 -38.84596 -36.36726 -35.05196 -33.88459 -32.83840 -31.54701 -30.90390 -29.50460 -28.05936 -27.03452 -25.31963 -24.20576 -22.73402 -22.30983 -21.19410 -20.61729 -18.75958 -18.28328 -17.27926 -16.67842 -16.46127 -16.15065 -15.74338 -15.34890 -14.97431 -14.72617 -14.54267 -14.41574 -14.15457 -13.80435 -13.45774 -13.31345 -13.22700 -12.85584 -12.80299 -12.40462 -12.30809 -12.10873 -11.92753 -11.44378 -11.22819 -11.08576 -10.84422 -10.65022 -10.61597 -10.38197 -9.94624 -9.74981 -9.42083 -9.15988 -8.94094 -8.58026 -8.39654 -8.11481 -6.12306 -4.15189 -0.02195 0.49905 1.61831 2.42067 2.87457 3.26586 3.27098 3.34409 3.38450 3.48509 3.90517 4.01872 4.27560 4.38434 4.40375 4.49412 4.57158 4.70169 4.71175 4.73895 4.87456 5.06838 5.21540 5.25121 5.37116 5.47100 5.57497 5.65639 5.71860 5.84941 5.88979 5.98719 6.17836 6.21616 6.27316 6.29028 6.53876 6.68320 6.81686 6.96196 7.46728 7.56554 7.74698 7.85275 7.88562 8.23094 8.48727 8.90854 9.49985 10.99328 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002685 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.525842 B =10423.955647 C =12159.832401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.119 3.881 4 C -0.165 4.165 5 C -0.059 4.059 6 C 0.119 3.881 7 N -0.476 5.476 8 C 0.202 3.798 9 C -0.109 4.109 10 C -0.168 4.168 11 C 0.552 3.448 12 O -0.533 6.533 13 N -0.714 5.714 14 C 0.121 3.879 15 C 0.011 3.989 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.025 4.025 25 C -0.079 4.079 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.148 0.852 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.439 3.263 0.891 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.074 3.926 4 C -0.185 4.185 5 C -0.078 4.078 6 C -0.003 4.003 7 N -0.185 5.185 8 C 0.049 3.951 9 C -0.166 4.166 10 C -0.173 4.173 11 C 0.338 3.662 12 O -0.413 6.413 13 N -0.363 5.363 14 C 0.000 4.000 15 C -0.026 4.026 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.051 4.051 25 C -0.081 4.081 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.166 0.834 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.544 4.366 0.952 25.932 hybrid contribution 0.995 -1.299 -0.026 1.637 sum -24.549 3.066 0.926 24.757 Atomic orbital electron populations 1.23097 0.78286 1.04216 1.01360 1.86120 1.21454 1.26462 1.88791 1.18614 0.92123 0.84310 0.97585 1.21138 1.00594 0.91996 1.04816 1.20635 0.92205 0.97746 0.97195 1.18929 0.94110 0.88108 0.99160 1.67844 1.11171 1.25086 1.14390 1.21564 0.87825 0.96007 0.89726 1.21093 1.01381 0.89669 1.04449 1.21008 0.95429 0.94380 1.06523 1.17945 0.85401 0.85190 0.77687 1.90709 1.76180 1.24178 1.50195 1.46304 1.08877 1.08951 1.72212 1.21803 0.75476 1.01618 1.01148 1.19346 0.95644 0.89834 0.97801 1.21072 0.90596 0.93677 1.50643 0.92122 1.24999 0.99178 0.95169 0.94963 1.69960 1.35308 0.98236 1.49746 0.86454 0.85078 0.78390 0.77637 1.19557 1.20932 1.20925 1.22001 0.93585 0.97387 0.92141 1.18404 0.93618 0.93673 1.02401 1.20154 0.91911 0.97251 1.05744 0.92550 0.92531 0.88051 0.84553 0.84104 0.89856 0.87568 0.91460 0.76944 0.92156 0.92166 0.95890 0.95885 0.92866 0.83393 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.88 10.47 -19.41 -0.20 -3.08 16 3 C 0.12 1.18 6.64 -39.58 -0.26 0.91 16 4 C -0.17 -1.39 8.94 -39.78 -0.36 -1.75 16 5 C -0.06 -0.59 9.96 -39.49 -0.39 -0.98 16 6 C 0.12 1.52 6.61 -84.76 -0.56 0.96 16 7 N -0.48 -6.69 10.20 -6.91 -0.07 -6.76 16 8 C 0.20 2.92 6.82 -82.14 -0.56 2.36 16 9 C -0.11 -1.45 8.82 36.01 0.32 -1.13 16 10 C -0.17 -2.44 5.89 -104.83 -0.62 -3.06 16 11 C 0.55 9.29 7.69 -12.37 -0.10 9.20 16 12 O -0.53 -10.18 13.31 5.32 0.07 -10.11 16 13 N -0.71 -12.13 5.51 -61.28 -0.34 -12.47 16 14 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 15 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 16 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.02 -0.31 9.38 -38.42 -0.36 -0.67 16 25 C -0.08 -0.97 5.74 -106.82 -0.61 -1.58 16 26 C -0.13 -1.42 9.68 -39.34 -0.38 -1.80 16 27 H 0.06 0.22 7.63 -51.92 -0.40 -0.18 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.73 6.22 -52.49 -0.33 0.41 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 1.56 5.81 -51.93 -0.30 1.26 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 5.81 6.58 -40.82 -0.27 5.54 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.15 1.51 6.53 -52.49 -0.34 1.17 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -32.20 354.44 -8.33 -40.53 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.38 Total: 2.27 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.47 Total: -6.80 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.33 Total: -44.28 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.13 Total: -13.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.20 -8.33 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784135308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.052 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds