Wall clock time and date at job start Tue Mar 31 2020 10:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00506 * 2 1 4 4 C 1.39830 * 119.63857 * 0.29171 * 3 2 1 5 5 C 1.36032 * 121.02368 * 180.28092 * 4 3 2 6 6 C 1.40570 * 119.89321 * 359.45543 * 5 4 3 7 7 N 1.33827 * 120.76018 * 180.27492 * 6 5 4 8 8 C 1.30791 * 121.73486 * 179.97438 * 7 6 5 9 9 C 1.50706 * 119.23004 * 179.97438 * 8 7 6 10 10 C 1.40603 * 121.55115 * 359.97438 * 8 7 6 11 11 C 1.47759 * 120.27656 * 180.02562 * 10 8 7 12 12 O 1.21554 * 119.99981 * 6.28263 * 11 10 8 13 13 N 1.34783 * 119.99817 * 186.29008 * 11 10 8 14 14 C 1.46498 * 119.99500 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46892 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47125 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99845 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99775 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47132 * 120.00379 * 20 18 16 23 23 H 1.48496 * 109.47351 * 240.00537 * 20 18 16 24 24 C 1.39007 * 119.45210 * 0.02562 * 10 8 7 25 25 C 1.40552 * 117.96946 * 359.97438 * 24 10 8 26 26 C 1.36601 * 119.64761 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46378 * 299.99636 * 1 2 3 28 28 H 1.09001 * 109.47155 * 59.99287 * 1 2 3 29 29 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.48732 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.05130 * 179.72680 * 5 4 3 32 32 H 1.08997 * 109.47216 * 96.67510 * 9 8 7 33 33 H 1.08995 * 109.47457 * 216.68466 * 9 8 7 34 34 H 1.09007 * 109.46790 * 336.68150 * 9 8 7 35 35 H 0.96995 * 120.00488 * 359.97438 * 13 11 10 36 36 H 1.08994 * 109.47638 * 300.00020 * 14 13 11 37 37 H 1.09007 * 109.47310 * 60.00388 * 14 13 11 38 38 H 1.09001 * 109.47266 * 300.00279 * 15 14 13 39 39 H 1.08998 * 109.46654 * 60.00133 * 15 14 13 40 40 H 0.97007 * 119.99777 * 179.97438 * 19 18 16 41 41 H 1.07998 * 121.01565 * 180.02562 * 24 10 8 42 42 H 1.07998 * 120.20409 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2772 2.3787 0.0062 5 6 1.8654 3.6053 0.0006 6 6 3.2672 3.7101 0.0001 7 7 3.8640 4.9079 0.0002 8 6 5.1664 5.0276 0.0002 9 6 5.7789 6.4045 -0.0003 10 6 6.0087 3.9017 0.0006 11 6 7.4767 4.0696 0.0011 12 8 7.9616 5.1783 0.1164 13 7 8.2781 2.9934 -0.1264 14 6 9.7336 3.1600 -0.1264 15 6 10.4033 1.7933 -0.2833 16 6 11.9005 1.9647 -0.2839 17 1 12.3313 2.9499 -0.1822 18 6 12.7204 0.8637 -0.4134 19 7 12.1957 -0.3358 -0.5368 20 14 14.5762 1.0761 -0.4135 21 1 14.9098 2.5151 -0.2611 22 1 15.1621 0.3104 0.7159 23 1 15.1322 0.5717 -1.6948 24 6 5.4489 2.6293 0.0005 25 6 4.0472 2.5259 0.0005 26 6 3.4106 1.2737 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.1997 2.3058 0.0105 31 1 1.2563 4.4971 0.0011 32 1 6.0357 6.6883 1.0203 33 1 6.6795 6.4014 -0.6142 34 1 5.0642 7.1199 -0.4074 35 1 7.8912 2.1087 -0.2181 36 1 10.0255 3.8053 -0.9548 37 1 10.0476 3.6122 0.8145 38 1 10.1114 1.1483 0.5455 39 1 10.0893 1.3408 -1.2239 40 1 12.7725 -1.1104 -0.6283 41 1 6.0720 1.7472 0.0012 42 1 3.9964 0.3664 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784135308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:34 Heat of formation + Delta-G solvation = -46.970942 kcal Electronic energy + Delta-G solvation = -24617.544140 eV Core-core repulsion = 20947.784653 eV Total energy + Delta-G solvation = -3669.759487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26205 -40.92578 -39.90766 -37.28708 -36.60253 -35.15434 -34.50347 -32.49982 -32.08196 -30.96759 -28.90614 -27.72616 -26.92379 -25.48347 -23.61876 -23.40145 -22.75096 -21.96870 -19.73301 -19.12598 -18.51911 -18.27166 -17.62172 -16.90475 -16.79063 -16.60978 -16.46868 -15.98282 -15.69398 -15.64403 -15.26764 -14.73139 -14.55702 -14.50962 -14.33260 -14.22721 -13.86092 -13.61825 -13.30550 -13.11415 -12.95912 -12.87489 -12.78290 -12.50924 -12.25533 -12.08457 -11.71818 -11.64579 -11.45217 -11.41864 -11.05072 -10.60749 -10.49947 -10.12318 -9.73433 -8.94216 -8.23773 -6.33678 -0.94506 -0.43820 0.72564 1.41504 1.42897 1.43850 1.55600 2.07632 2.12505 2.29026 2.43703 2.93991 3.10647 3.11476 3.43014 3.47196 3.57771 3.71292 3.82902 3.95287 4.24836 4.38737 4.44559 4.46255 4.50728 4.53994 4.57075 4.66565 4.77015 4.78633 4.82982 4.86347 4.89794 5.04242 5.13318 5.15535 5.30611 5.38549 5.49060 5.58432 5.58676 5.78971 6.16153 6.31683 6.49195 6.77576 6.79780 7.13156 7.35662 8.88274 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002685 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.525842 B =10423.955647 C =12159.832401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.123 3.877 4 C -0.147 4.147 5 C -0.066 4.066 6 C 0.099 3.901 7 N -0.483 5.483 8 C 0.186 3.814 9 C -0.102 4.102 10 C -0.187 4.187 11 C 0.556 3.444 12 O -0.559 6.559 13 N -0.711 5.711 14 C 0.141 3.859 15 C 0.021 3.979 16 C -0.544 4.544 17 H 0.060 0.940 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.015 4.015 25 C -0.089 4.089 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.174 0.826 31 H 0.160 0.840 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.407 0.593 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.166 0.834 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.513 2.707 0.945 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.244 6.244 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.022 4.022 7 N -0.192 5.192 8 C 0.032 3.968 9 C -0.158 4.158 10 C -0.193 4.193 11 C 0.344 3.656 12 O -0.440 6.440 13 N -0.361 5.361 14 C 0.018 3.982 15 C -0.017 4.017 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.041 4.041 25 C -0.091 4.091 26 C -0.166 4.166 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.191 0.809 31 H 0.178 0.822 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.244 0.756 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.183 0.817 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.651 3.800 1.005 27.929 hybrid contribution 1.380 -1.262 -0.043 1.871 sum -26.270 2.538 0.962 26.410 Atomic orbital electron populations 1.23456 0.75970 1.05945 1.02776 1.86119 1.23882 1.26053 1.88337 1.18785 0.92054 0.85263 0.96125 1.21500 1.02355 0.90707 1.02153 1.20891 0.91064 0.99229 0.97214 1.19391 0.95547 0.87854 0.99446 1.67848 1.10759 1.25942 1.14701 1.21644 0.88233 0.96214 0.90679 1.20976 1.00933 0.89913 1.04028 1.20724 0.93577 0.95479 1.09471 1.18239 0.86381 0.84439 0.76570 1.90695 1.76938 1.25107 1.51284 1.46071 1.07453 1.09903 1.72707 1.21307 0.77371 0.99119 1.00390 1.19157 0.94808 0.91314 0.96379 1.21491 0.92324 0.93829 1.50597 0.92147 1.25858 1.03984 0.94855 0.94508 1.70061 1.37055 0.98986 1.50510 0.85409 0.79305 0.78588 0.77829 1.18903 1.20324 1.20317 1.22219 0.94249 0.97162 0.90467 1.18517 0.93419 0.94332 1.02812 1.20270 0.92877 0.96918 1.06581 0.91057 0.91061 0.86440 0.80874 0.82205 0.90073 0.89283 0.90034 0.75607 0.92904 0.92923 0.97207 0.97256 0.92580 0.81687 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.33 -5.10 10.47 -92.36 -0.97 -6.07 16 3 C 0.12 2.13 6.64 22.27 0.15 2.27 16 4 C -0.15 -1.98 8.94 22.14 0.20 -1.78 16 5 C -0.07 -1.14 9.96 22.33 0.22 -0.92 16 6 C 0.10 2.44 6.61 40.29 0.27 2.70 16 7 N -0.48 -13.41 10.20 -175.78 -1.79 -15.20 16 8 C 0.19 5.45 6.82 43.29 0.30 5.74 16 9 C -0.10 -2.77 8.82 71.24 0.63 -2.15 16 10 C -0.19 -5.53 5.89 -20.00 -0.12 -5.65 16 11 C 0.56 19.22 7.69 86.76 0.67 19.89 16 12 O -0.56 -22.08 13.31 -3.89 -0.05 -22.14 16 13 N -0.71 -24.65 5.51 -466.05 -2.57 -27.22 16 14 C 0.14 5.94 5.61 86.38 0.48 6.42 16 15 C 0.02 1.03 5.09 29.85 0.15 1.19 16 16 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.37 5.46 84.66 0.46 0.83 16 19 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 20 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 C -0.01 -0.36 9.38 23.02 0.22 -0.15 16 25 C -0.09 -2.11 5.74 -21.29 -0.12 -2.23 16 26 C -0.15 -2.97 9.68 22.43 0.22 -2.76 16 27 H 0.07 0.25 7.63 -2.38 -0.02 0.24 16 28 H 0.07 0.26 7.65 -2.39 -0.02 0.24 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.17 1.00 6.22 -2.91 -0.02 0.99 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.74 5.81 -2.39 -0.01 2.72 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.41 12.12 6.58 -92.71 -0.61 11.51 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 41 H 0.17 3.32 6.53 -2.91 -0.02 3.30 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -69.64 354.44 2.44 -67.20 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.45 Total: 16.79 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.06 Total: -5.16 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.07 Total: -96.02 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.02 Total: -28.21 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.64 2.44 -67.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784135308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.230 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds