Wall clock time and date at job start Tue Mar 31 2020 10:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38022 * 119.93979 * 2 1 4 4 C 1.38104 * 120.32546 * 180.30067 * 3 2 1 5 5 C 1.50698 * 119.89883 * 179.70349 * 4 3 2 6 6 C 1.39744 * 120.19918 * 359.44377 * 4 3 2 7 7 C 1.47861 * 120.06100 * 180.29663 * 6 4 3 8 8 O 1.21548 * 119.99667 * 55.28027 * 7 6 4 9 9 N 1.34774 * 120.00034 * 235.28176 * 7 6 4 10 10 C 1.46500 * 119.99887 * 185.49568 * 9 7 6 11 11 C 1.50702 * 109.46985 * 90.00137 * 10 9 7 12 12 H 1.08003 * 119.99856 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00151 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99707 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47454 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47299 * 119.99936 * 15 13 11 18 18 H 1.48505 * 109.46987 * 239.99952 * 15 13 11 19 19 C 1.46503 * 120.00134 * 5.50098 * 9 7 6 20 20 C 1.52996 * 109.47049 * 84.90688 * 19 9 7 21 21 C 1.47203 * 109.46977 * 179.97438 * 20 19 9 22 22 N 5.95170 * 116.74917 * 255.03336 * 2 1 3 23 23 C 1.39231 * 119.87450 * 0.55329 * 6 4 3 24 24 C 1.39613 * 119.68414 * 359.72304 * 23 6 4 25 25 C 1.47182 * 120.10050 * 180.02562 * 24 23 6 26 26 O 1.21253 * 120.00223 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46940 * 89.99905 * 1 2 3 28 28 H 1.08998 * 109.47056 * 210.00370 * 1 2 3 29 29 H 1.08995 * 109.46655 * 329.99955 * 1 2 3 30 30 H 1.08004 * 119.83704 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.47323 * 95.02676 * 5 4 3 32 32 H 1.09006 * 109.46788 * 215.03176 * 5 4 3 33 33 H 1.08999 * 109.47110 * 335.02689 * 5 4 3 34 34 H 1.08998 * 109.47220 * 209.99967 * 10 9 7 35 35 H 1.08996 * 109.47455 * 330.00362 * 10 9 7 36 36 H 0.97000 * 119.99639 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46793 * 204.90971 * 19 9 7 38 38 H 1.08995 * 109.46645 * 324.90779 * 19 9 7 39 39 H 1.09000 * 109.47555 * 299.99817 * 20 19 9 40 40 H 1.09002 * 109.47037 * 60.00257 * 20 19 9 41 41 H 1.08006 * 120.15764 * 179.70798 * 23 6 4 42 42 H 1.08001 * 120.00014 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1960 0.0000 4 6 3.5770 1.2053 -0.0063 5 6 4.3193 2.5168 -0.0130 6 6 4.2880 0.0023 -0.0009 7 6 5.7666 0.0159 -0.0010 8 8 6.3688 0.6249 0.8615 9 7 6.4465 -0.6469 -0.9575 10 6 7.9073 -0.7347 -0.8903 11 6 8.3014 -1.9638 -0.1123 12 1 7.5398 -2.6146 0.2913 13 6 9.6341 -2.2580 0.0833 14 7 10.5615 -1.4662 -0.4095 15 14 10.1225 -3.7818 1.0470 16 1 8.9007 -4.4998 1.4905 17 1 10.9356 -4.6747 0.1826 18 1 10.9197 -3.3821 2.2344 19 6 5.7248 -1.2795 -2.0644 20 6 5.4707 -0.2465 -3.1640 21 6 4.7460 -0.8822 -4.2764 22 7 4.1859 -1.3726 -5.1345 23 6 3.6016 -1.2090 -0.0009 24 6 2.2055 -1.2126 -0.0004 25 6 1.4706 -2.4878 0.0002 26 8 2.0776 -3.5374 -0.0003 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3632 0.8900 0.5138 30 1 1.6523 2.1293 0.0004 31 1 4.5813 2.7913 1.0089 32 1 5.2280 2.4169 -0.6068 33 1 3.6856 3.2908 -0.4459 34 1 8.3144 -0.7975 -1.8994 35 1 8.3022 0.1516 -0.3937 36 1 11.4991 -1.6734 -0.2722 37 1 6.3214 -2.0985 -2.4661 38 1 4.7724 -1.6670 -1.7027 39 1 4.8741 0.5726 -2.7623 40 1 6.4231 0.1411 -3.5256 41 1 4.1466 -2.1415 -0.0016 42 1 0.3906 -2.4886 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793153315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:51 Heat of formation + Delta-G solvation = -41.990468 kcal Electronic energy + Delta-G solvation = -26055.263314 eV Core-core repulsion = 22385.719797 eV Total energy + Delta-G solvation = -3669.543517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69553 -40.32999 -39.02637 -38.07168 -36.79871 -35.03115 -34.54720 -33.16433 -32.27481 -29.70967 -28.82554 -28.09333 -25.59233 -25.21846 -24.44842 -22.89434 -21.73682 -19.98550 -18.94569 -18.48771 -18.30479 -17.54024 -17.42214 -16.64856 -16.21950 -16.06122 -15.90084 -15.67202 -15.53419 -15.17875 -14.92230 -14.68442 -14.47467 -14.39755 -14.14861 -13.90213 -13.74037 -13.64098 -13.32306 -13.24405 -13.00633 -12.95887 -12.81718 -12.61977 -12.54443 -12.40106 -12.31859 -12.23837 -11.94815 -11.70567 -10.93135 -10.63290 -10.57692 -9.86547 -9.71326 -9.49539 -8.23079 -6.35557 -0.41519 0.07049 1.35006 1.35618 1.38047 1.48832 1.57777 1.74473 1.85520 2.19582 2.39835 2.69867 3.00629 3.08704 3.27493 3.56647 3.76091 3.79778 3.88380 4.00327 4.01081 4.15274 4.40482 4.44286 4.60299 4.66280 4.69492 4.73159 4.77862 4.89279 4.90731 4.95888 5.03378 5.15876 5.20267 5.26930 5.35629 5.41179 5.48528 5.53242 5.80457 5.85045 6.06678 6.46591 6.49846 6.61102 6.73253 7.23330 7.38982 8.83931 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.004398 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.063647 B = 6364.818996 C = 6499.996457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.002 3.998 3 C -0.132 4.132 4 C -0.007 4.007 5 C -0.120 4.120 6 C -0.159 4.159 7 C 0.554 3.446 8 O -0.574 6.574 9 N -0.590 5.590 10 C 0.260 3.740 11 C -0.545 4.545 12 H 0.047 0.953 13 C 0.017 3.983 14 N -0.921 5.921 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.270 1.270 18 H -0.280 1.280 19 C 0.109 3.891 20 C -0.034 4.034 21 C 0.243 3.757 22 N -0.478 5.478 23 C -0.039 4.039 24 C -0.219 4.219 25 C 0.386 3.614 26 O -0.508 6.508 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.012 0.988 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.202 7.934 -1.907 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.001 3.999 3 C -0.150 4.150 4 C -0.008 4.008 5 C -0.176 4.176 6 C -0.162 4.162 7 C 0.343 3.657 8 O -0.455 6.455 9 N -0.320 5.320 10 C 0.139 3.861 11 C -0.584 4.584 12 H 0.066 0.934 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.206 1.206 19 C -0.016 4.016 20 C -0.075 4.075 21 C -0.075 4.075 22 N -0.156 5.156 23 C -0.058 4.058 24 C -0.220 4.220 25 C 0.248 3.752 26 O -0.383 6.383 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.190 0.810 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.175 6.971 -2.775 24.360 hybrid contribution 1.685 -0.794 0.971 2.101 sum -21.490 6.177 -1.805 22.433 Atomic orbital electron populations 1.21157 0.87002 1.05452 1.04831 1.20659 0.98315 0.90627 0.90284 1.21247 0.91688 0.99631 1.02413 1.20380 0.94778 0.93697 0.91950 1.20944 1.00008 0.93558 1.03090 1.19717 0.91710 0.95081 1.09680 1.18724 0.87713 0.78201 0.81082 1.90733 1.71153 1.45051 1.38516 1.48028 1.08345 1.52061 1.23545 1.18891 0.74584 0.95747 0.96848 1.21733 0.92118 1.09488 1.35075 0.93444 1.25664 0.96373 0.99741 0.96531 1.70015 1.00906 1.38851 1.46285 0.85538 0.78171 0.79514 0.78637 1.19846 1.19532 1.20566 1.21595 0.98330 0.95262 0.86396 1.19751 1.01280 0.98308 0.88175 1.29031 0.92328 0.92581 0.93531 1.81219 1.11735 1.10079 1.12598 1.21390 0.94698 0.96480 0.93230 1.20852 0.93094 0.97470 1.10560 1.24858 0.96915 0.85257 0.68159 1.90563 1.74680 1.36134 1.36955 0.88225 0.89356 0.88600 0.80974 0.90965 0.92894 0.87392 0.94471 0.96957 0.92368 0.89481 0.89462 0.85511 0.85350 0.87006 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 9.51 71.24 0.68 0.10 16 2 C 0.00 0.02 5.93 -19.50 -0.12 -0.09 16 3 C -0.13 -1.94 9.29 22.19 0.21 -1.73 16 4 C -0.01 -0.16 5.92 -19.53 -0.12 -0.28 16 5 C -0.12 -2.53 9.01 71.24 0.64 -1.89 16 6 C -0.16 -4.82 4.87 -20.13 -0.10 -4.91 16 7 C 0.55 22.28 6.02 86.79 0.52 22.80 16 8 O -0.57 -28.27 15.78 -3.87 -0.06 -28.33 16 9 N -0.59 -23.59 2.47 -829.57 -2.05 -25.64 16 10 C 0.26 13.11 5.18 85.63 0.44 13.56 16 11 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 12 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 13 C 0.02 0.94 5.46 84.65 0.46 1.41 16 14 N -0.92 -54.04 13.29 21.45 0.28 -53.75 16 15 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 16 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 C 0.11 3.34 5.13 86.38 0.44 3.78 16 20 C -0.03 -0.77 5.99 28.79 0.17 -0.60 16 21 C 0.24 6.12 15.43 89.44 1.38 7.50 16 22 N -0.48 -14.37 18.54 20.01 0.37 -14.00 16 23 C -0.04 -1.13 7.15 22.84 0.16 -0.97 16 24 C -0.22 -4.58 5.86 -20.19 -0.12 -4.70 16 25 C 0.39 7.42 10.88 70.17 0.76 8.18 16 26 O -0.51 -15.24 17.16 -2.95 -0.05 -15.29 16 27 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.18 6.31 -2.39 -0.02 0.17 16 29 H 0.10 0.15 8.08 -2.39 -0.02 0.13 16 30 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.35 7.18 -2.38 -0.02 1.33 16 33 H 0.11 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.01 0.71 7.35 -2.39 -0.02 0.69 16 36 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.09 2.82 8.03 -2.39 -0.02 2.80 16 38 H 0.09 2.56 4.52 -2.39 -0.01 2.55 16 39 H 0.13 2.37 8.05 -2.39 -0.02 2.36 16 40 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.11 3.84 6.95 -2.91 -0.02 3.82 16 42 H 0.16 1.24 6.34 -2.91 -0.02 1.22 16 Total: -1.00 -80.70 366.64 7.24 -73.46 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.05 Total: 4.81 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.67 Total: 11.62 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.39 Total: -93.38 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.11 Total: -43.62 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.70 7.24 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793153315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.470 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds