Wall clock time and date at job start Tue Mar 31 2020 10:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99743 * 2 1 4 4 C 1.38214 * 119.99744 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99980 * 359.76299 * 4 3 2 6 6 C 1.38210 * 119.99994 * 0.47152 * 5 4 3 7 7 C 1.50701 * 120.00383 * 179.78400 * 6 5 4 8 8 N 1.46501 * 109.46994 * 269.72955 * 7 6 5 9 9 C 1.34777 * 119.99848 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00283 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99810 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47470 * 299.99650 * 11 9 8 13 13 C 1.47204 * 109.47150 * 59.99520 * 11 9 8 14 14 N 7.39149 * 136.85540 * 237.81950 * 2 1 3 15 15 C 1.50700 * 109.47119 * 179.97438 * 11 9 8 16 16 O 1.20755 * 119.99811 * 334.99948 * 15 11 9 17 17 C 1.50706 * 119.99815 * 155.00062 * 15 11 9 18 18 C 1.53002 * 109.46925 * 180.02562 * 17 15 11 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00355 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99771 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99890 * 23 21 19 25 25 H 1.48501 * 109.47062 * 209.99841 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99640 * 23 21 19 27 27 C 1.38207 * 119.99888 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47147 * 270.02063 * 1 2 3 29 29 H 1.09002 * 109.47227 * 30.02004 * 1 2 3 30 30 H 1.08995 * 109.47249 * 150.01573 * 1 2 3 31 31 H 1.07997 * 120.00409 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99867 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.99853 * 180.25405 * 5 4 3 34 34 H 1.08998 * 109.47498 * 149.72583 * 7 6 5 35 35 H 1.09000 * 109.47011 * 29.71931 * 7 6 5 36 36 H 0.97003 * 120.00250 * 359.97438 * 8 7 6 37 37 H 1.09000 * 109.47318 * 299.99467 * 17 15 11 38 38 H 1.09000 * 109.47161 * 60.00098 * 17 15 11 39 39 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 40 40 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 41 41 H 0.96991 * 119.99891 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.00246 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5807 -1.1969 -0.0010 7 6 4.3341 -2.5020 -0.0011 8 7 4.5774 -2.9253 -1.3824 9 6 5.2393 -4.0732 -1.6288 10 8 5.6339 -4.7555 -0.7071 11 6 5.4890 -4.5089 -3.0496 12 1 4.5361 -4.6392 -3.5626 13 6 6.2843 -3.4835 -3.7447 14 7 6.9001 -2.6920 -4.2781 15 6 6.2426 -5.8140 -3.0497 16 8 6.9282 -6.1154 -2.1025 17 6 6.1405 -6.7429 -4.2321 18 6 6.9947 -7.9867 -3.9787 19 6 6.8932 -8.9153 -5.1612 20 1 6.2809 -8.6451 -6.0089 21 6 7.5827 -10.1093 -5.1614 22 7 7.4937 -10.9199 -6.1932 23 14 8.6422 -10.5762 -3.6955 24 1 7.8243 -11.3344 -2.7151 25 1 9.7754 -11.4201 -4.1526 26 1 9.1692 -9.3451 -3.0536 27 6 2.1980 -1.1969 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 -0.0010 33 1 5.3517 0.0001 0.0076 34 1 3.7454 -3.2615 0.5133 35 1 5.2869 -2.3715 0.5119 36 1 4.2615 -2.3798 -2.1197 37 1 5.1010 -7.0391 -4.3728 38 1 6.4972 -6.2327 -5.1268 39 1 8.0343 -7.6909 -3.8377 40 1 6.6375 -8.4966 -3.0840 41 1 7.9790 -11.7596 -6.1934 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813089260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:55 Heat of formation + Delta-G solvation = -27.569522 kcal Electronic energy + Delta-G solvation = -24195.914231 eV Core-core repulsion = 20526.996053 eV Total energy + Delta-G solvation = -3668.918178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77883 -39.88855 -38.55260 -36.75959 -35.42350 -33.59639 -33.19162 -32.34134 -31.54234 -30.89603 -27.50387 -26.83224 -25.92483 -22.60680 -21.96660 -21.19198 -21.13353 -19.76353 -18.66299 -17.30403 -17.17683 -16.76939 -16.33766 -16.06667 -15.48380 -15.20367 -14.81580 -14.57099 -14.43970 -14.15412 -14.10089 -13.81218 -13.62078 -13.33121 -13.24391 -13.07752 -12.90423 -12.63422 -12.53807 -12.42977 -12.39726 -12.19600 -11.51068 -11.45007 -11.43390 -11.00398 -10.36427 -10.28987 -10.10684 -9.81514 -9.45376 -9.35467 -9.24607 -9.15283 -9.03584 -8.53613 -6.05500 -4.04944 0.76875 0.92942 1.89417 2.05982 2.42302 2.57567 2.83550 3.36558 3.37153 3.43607 3.53098 3.66956 4.05834 4.14911 4.32932 4.36333 4.45100 4.48472 4.68192 4.75680 4.86787 4.91700 5.04873 5.15283 5.25535 5.29654 5.30178 5.39220 5.51362 5.59909 5.68870 5.97504 5.97747 5.99512 6.01379 6.10601 6.14257 6.53303 6.62521 7.05733 7.13014 7.25550 7.33781 7.64136 7.78745 7.88353 8.48211 8.96965 9.57115 11.07127 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.002270 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.439716 B =12332.913198 C =12421.230890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.105 4.105 7 C 0.162 3.838 8 N -0.726 5.726 9 C 0.526 3.474 10 O -0.485 6.485 11 C -0.067 4.067 12 H 0.165 0.835 13 C 0.215 3.785 14 N -0.392 5.392 15 C 0.360 3.640 16 O -0.393 6.393 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.902 5.902 23 Si 0.876 3.124 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.261 1.261 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.402 0.598 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.264 0.736 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 25.522 12.422 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.136 4.136 5 C -0.124 4.124 6 C -0.106 4.106 7 C 0.039 3.961 8 N -0.380 5.380 9 C 0.307 3.693 10 O -0.356 6.356 11 C -0.092 4.092 12 H 0.183 0.817 13 C -0.104 4.104 14 N -0.069 5.069 15 C 0.227 3.773 16 O -0.259 6.259 17 C -0.182 4.182 18 C -0.044 4.044 19 C -0.563 4.563 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.540 5.540 23 Si 0.703 3.297 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.186 1.186 27 C -0.118 4.118 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.612 25.832 12.800 31.881 hybrid contribution 0.049 -0.221 0.381 0.443 sum -13.563 25.611 13.181 31.838 Atomic orbital electron populations 1.20812 0.90937 1.03008 1.02509 1.19956 0.96287 0.93042 0.99591 1.21122 0.94308 0.97655 1.00071 1.21166 0.94323 0.98087 0.99996 1.21132 1.00133 0.91907 0.99237 1.19851 0.93834 0.94468 1.02412 1.20221 1.00009 0.92721 0.83124 1.46036 1.59120 1.23929 1.08911 1.19612 0.78744 0.81426 0.89483 1.90886 1.47702 1.52535 1.44440 1.19802 1.01643 0.93447 0.94335 0.81746 1.27641 0.94477 0.93946 0.94289 1.81262 1.07747 1.09744 1.08102 1.24451 0.78753 0.84604 0.89461 1.90494 1.29183 1.72363 1.33855 1.22079 1.04111 0.97080 0.94952 1.19459 0.95218 0.91869 0.97854 1.21059 1.29862 1.02568 1.02856 0.90762 1.24977 0.96178 0.96173 0.95890 1.69903 1.42905 1.11151 1.30062 0.86823 0.80549 0.79117 0.83242 1.20110 1.21401 1.18583 1.21017 0.93291 0.97953 0.99584 0.91041 0.91465 0.91295 0.85986 0.85814 0.85820 0.90032 0.90291 0.76326 0.88292 0.88742 0.95896 0.96001 0.92663 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.09 -0.56 5.88 -104.62 -0.62 -1.18 16 3 C -0.11 -0.70 9.70 -39.58 -0.38 -1.09 16 4 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 5 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 6 C -0.11 -0.77 5.25 -104.62 -0.55 -1.32 16 7 C 0.16 1.34 5.80 -5.19 -0.03 1.31 16 8 N -0.73 -6.30 5.44 -61.47 -0.33 -6.64 16 9 C 0.53 6.39 7.08 -10.99 -0.08 6.31 16 10 O -0.48 -8.14 14.52 -18.20 -0.26 -8.40 16 11 C -0.07 -0.74 2.84 -95.71 -0.27 -1.01 16 12 H 0.17 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.22 2.66 14.39 -20.76 -0.30 2.36 16 14 N -0.39 -5.62 18.54 42.15 0.78 -4.84 16 15 C 0.36 5.82 6.14 -29.03 -0.18 5.64 16 16 O -0.39 -8.06 14.31 -17.76 -0.25 -8.31 16 17 C -0.14 -2.53 5.58 -27.88 -0.16 -2.68 16 18 C -0.01 -0.16 3.33 -27.88 -0.09 -0.25 16 19 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 20 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 23 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 27 C -0.10 -0.67 9.36 -39.58 -0.37 -1.04 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.40 2.65 8.33 -40.82 -0.34 2.31 16 37 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 40 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -36.31 371.67 -7.99 -44.30 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.75 Total: -4.09 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.88 Total: -8.41 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 1.22 Total: -38.29 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.52 Total: -16.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.31 -7.99 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813089260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.731 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds