Wall clock time and date at job start Tue Mar 31 2020 10:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99743 * 2 1 4 4 C 1.38214 * 119.99744 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99980 * 359.76299 * 4 3 2 6 6 C 1.38210 * 119.99994 * 0.47152 * 5 4 3 7 7 C 1.50701 * 120.00383 * 179.78400 * 6 5 4 8 8 N 1.46501 * 109.46994 * 269.72955 * 7 6 5 9 9 C 1.34777 * 119.99848 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00283 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99810 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47470 * 299.99650 * 11 9 8 13 13 C 1.47204 * 109.47150 * 59.99520 * 11 9 8 14 14 N 7.39149 * 136.85540 * 237.81950 * 2 1 3 15 15 C 1.50700 * 109.47119 * 179.97438 * 11 9 8 16 16 O 1.20755 * 119.99811 * 334.99948 * 15 11 9 17 17 C 1.50706 * 119.99815 * 155.00062 * 15 11 9 18 18 C 1.53002 * 109.46925 * 180.02562 * 17 15 11 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00355 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99771 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99890 * 23 21 19 25 25 H 1.48501 * 109.47062 * 209.99841 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99640 * 23 21 19 27 27 C 1.38207 * 119.99888 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47147 * 270.02063 * 1 2 3 29 29 H 1.09002 * 109.47227 * 30.02004 * 1 2 3 30 30 H 1.08995 * 109.47249 * 150.01573 * 1 2 3 31 31 H 1.07997 * 120.00409 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99867 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.99853 * 180.25405 * 5 4 3 34 34 H 1.08998 * 109.47498 * 149.72583 * 7 6 5 35 35 H 1.09000 * 109.47011 * 29.71931 * 7 6 5 36 36 H 0.97003 * 120.00250 * 359.97438 * 8 7 6 37 37 H 1.09000 * 109.47318 * 299.99467 * 17 15 11 38 38 H 1.09000 * 109.47161 * 60.00098 * 17 15 11 39 39 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 40 40 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 41 41 H 0.96991 * 119.99891 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.00246 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5807 -1.1969 -0.0010 7 6 4.3341 -2.5020 -0.0011 8 7 4.5774 -2.9253 -1.3824 9 6 5.2393 -4.0732 -1.6288 10 8 5.6339 -4.7555 -0.7071 11 6 5.4890 -4.5089 -3.0496 12 1 4.5361 -4.6392 -3.5626 13 6 6.2843 -3.4835 -3.7447 14 7 6.9001 -2.6920 -4.2781 15 6 6.2426 -5.8140 -3.0497 16 8 6.9282 -6.1154 -2.1025 17 6 6.1405 -6.7429 -4.2321 18 6 6.9947 -7.9867 -3.9787 19 6 6.8932 -8.9153 -5.1612 20 1 6.2809 -8.6451 -6.0089 21 6 7.5827 -10.1093 -5.1614 22 7 7.4937 -10.9199 -6.1932 23 14 8.6422 -10.5762 -3.6955 24 1 7.8243 -11.3344 -2.7151 25 1 9.7754 -11.4201 -4.1526 26 1 9.1692 -9.3451 -3.0536 27 6 2.1980 -1.1969 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 -0.0010 33 1 5.3517 0.0001 0.0076 34 1 3.7454 -3.2615 0.5133 35 1 5.2869 -2.3715 0.5119 36 1 4.2615 -2.3798 -2.1197 37 1 5.1010 -7.0391 -4.3728 38 1 6.4972 -6.2327 -5.1268 39 1 8.0343 -7.6909 -3.8377 40 1 6.6375 -8.4966 -3.0840 41 1 7.9790 -11.7596 -6.1934 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813089260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:54 Heat of formation + Delta-G solvation = -49.646469 kcal Electronic energy + Delta-G solvation = -24196.871560 eV Core-core repulsion = 20526.996053 eV Total energy + Delta-G solvation = -3669.875506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83179 -40.51763 -39.67657 -37.83846 -36.21872 -35.55052 -33.84685 -33.47174 -32.88453 -31.87959 -28.35011 -27.82130 -26.97888 -23.67186 -23.01904 -22.23472 -21.69854 -21.15805 -19.73687 -18.97782 -18.20106 -17.68166 -17.24041 -16.74831 -16.56216 -16.19117 -16.09884 -15.78901 -15.62501 -15.38595 -14.97679 -14.69863 -14.53942 -14.48885 -14.14401 -14.05960 -13.86080 -13.80098 -13.74778 -13.41699 -13.20912 -12.92810 -12.89061 -12.85607 -12.14805 -11.99096 -11.95142 -11.89973 -11.73959 -11.39046 -11.34732 -10.75912 -10.53382 -10.26374 -9.80164 -9.56499 -8.29461 -6.31575 0.25207 0.45130 0.69976 1.09159 1.33810 1.36561 1.40648 1.49775 1.54195 1.99865 2.35722 2.66350 2.81333 2.94207 3.06631 3.47199 3.61052 3.86336 4.02632 4.04151 4.15279 4.24437 4.34637 4.46993 4.50160 4.55351 4.59236 4.67802 4.81633 4.86740 4.98397 5.06514 5.13757 5.20956 5.31652 5.38576 5.46410 5.52708 5.60960 5.63434 5.67896 6.07115 6.12867 6.25269 6.29446 6.46602 6.77340 7.00646 7.33736 8.85949 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.002270 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.439716 B =12332.913198 C =12421.230890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.110 4.110 7 C 0.164 3.836 8 N -0.706 5.706 9 C 0.527 3.473 10 O -0.536 6.536 11 C -0.050 4.050 12 H 0.227 0.773 13 C 0.236 3.764 14 N -0.423 5.423 15 C 0.368 3.632 16 O -0.441 6.441 17 C -0.143 4.143 18 C -0.008 4.008 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.012 3.988 22 N -0.943 5.943 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.106 4.106 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.416 0.584 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.006 0.994 40 H 0.014 0.986 41 H 0.266 0.734 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 27.352 12.848 34.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.110 4.110 7 C 0.041 3.959 8 N -0.359 5.359 9 C 0.310 3.690 10 O -0.410 6.410 11 C -0.075 4.075 12 H 0.243 0.757 13 C -0.083 4.083 14 N -0.099 5.099 15 C 0.239 3.761 16 O -0.310 6.310 17 C -0.180 4.180 18 C -0.046 4.046 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.185 4.185 22 N -0.584 5.584 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.125 4.125 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.024 0.976 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.377 27.719 13.202 34.338 hybrid contribution 0.520 -0.715 0.218 0.910 sum -14.857 27.004 13.420 33.616 Atomic orbital electron populations 1.20847 0.89587 1.03707 1.03040 1.20239 0.97398 0.92914 0.99016 1.21409 0.94358 0.98487 0.99433 1.21393 0.94754 0.98415 0.99691 1.21247 1.00340 0.92321 0.99818 1.19741 0.94083 0.93789 1.03397 1.20204 0.99651 0.93402 0.82603 1.45911 1.57504 1.22718 1.09767 1.19693 0.78432 0.81703 0.89187 1.90885 1.50056 1.54275 1.45814 1.19708 1.03163 0.90014 0.94569 0.75722 1.27643 0.93722 0.93479 0.93437 1.81302 1.08478 1.10787 1.09383 1.24516 0.77817 0.85957 0.87825 1.90502 1.31301 1.73869 1.35344 1.22013 1.04694 0.95055 0.96255 1.19361 0.95638 0.93908 0.95673 1.21433 1.28436 1.02926 1.03431 0.92612 1.25787 0.97798 0.96627 0.98301 1.70015 1.44486 1.11891 1.31995 0.85916 0.79226 0.78779 0.80335 1.19214 1.20764 1.18651 1.21173 0.93071 0.98704 0.99503 0.90528 0.90593 0.90821 0.84270 0.84434 0.85847 0.90001 0.91416 0.74735 0.85182 0.87237 0.97560 0.96764 0.92500 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 71.24 0.71 -0.03 16 2 C -0.10 -1.01 5.88 -19.87 -0.12 -1.13 16 3 C -0.12 -1.23 9.70 22.27 0.22 -1.01 16 4 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 5 C -0.12 -1.58 9.70 22.27 0.22 -1.36 16 6 C -0.11 -1.45 5.25 -19.86 -0.10 -1.56 16 7 C 0.16 2.56 5.80 85.63 0.50 3.05 16 8 N -0.71 -10.83 5.44 -466.80 -2.54 -13.37 16 9 C 0.53 11.84 7.08 87.66 0.62 12.46 16 10 O -0.54 -17.72 14.52 19.71 0.29 -17.44 16 11 C -0.05 -0.96 2.84 -14.09 -0.04 -1.00 16 12 H 0.23 1.51 8.14 -2.39 -0.02 1.49 16 13 C 0.24 5.22 14.39 89.44 1.29 6.51 16 14 N -0.42 -11.31 18.54 20.01 0.37 -10.94 16 15 C 0.37 11.20 6.14 29.10 0.18 11.38 16 16 O -0.44 -17.92 14.31 21.29 0.30 -17.61 16 17 C -0.14 -4.68 5.58 29.85 0.17 -4.52 16 18 C -0.01 -0.39 3.33 29.85 0.10 -0.29 16 19 C -0.52 -29.14 9.66 25.60 0.25 -28.90 16 20 H 0.06 3.23 7.99 -2.91 -0.02 3.21 16 21 C 0.01 0.73 5.47 84.65 0.46 1.19 16 22 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 23 Si 0.93 46.24 27.47 68.60 1.88 48.12 16 24 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 27 C -0.11 -1.24 9.36 22.27 0.21 -1.03 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 30 H 0.07 0.41 8.09 -2.39 -0.02 0.39 16 31 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 36 H 0.42 4.28 8.33 -92.71 -0.77 3.51 16 37 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.01 0.30 7.16 -2.38 -0.02 0.28 16 40 H 0.01 0.68 7.53 -2.39 -0.02 0.66 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -80.73 371.67 5.69 -75.03 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 0.21 Total: 1.67 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.88 Total: -7.41 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.87 Total: -82.37 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: 0.59 Total: -35.05 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.88 Total: 48.12 kcal Total: -80.73 5.69 -75.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813089260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.385 kcal (2) G-P(sol) polarization free energy of solvation -80.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds