Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.89974 * 2 1 4 4 N 1.40089 * 108.20703 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03734 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92367 * 359.76167 * 4 3 2 7 7 C 1.35322 * 107.74430 * 0.38439 * 6 4 3 8 8 C 1.50704 * 126.03592 * 179.87528 * 7 6 4 9 9 C 1.50701 * 109.47079 * 264.69111 * 8 7 6 10 10 O 1.20827 * 120.00088 * 0.02562 * 9 8 7 11 11 O 1.34234 * 120.00071 * 180.02562 * 9 8 7 12 12 C 1.45193 * 116.99793 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47153 * 180.02562 * 12 11 9 14 14 C 1.38637 * 119.74934 * 269.72947 * 13 12 11 15 15 C 1.37618 * 120.24535 * 179.71502 * 14 13 12 16 16 C 1.40711 * 119.74757 * 0.57229 * 15 14 13 17 17 C 1.41394 * 120.24494 * 179.67746 * 16 15 14 18 18 H 1.08004 * 120.00147 * 204.40075 * 17 16 15 19 19 C 1.39939 * 119.99918 * 24.40383 * 17 16 15 20 20 N 1.30820 * 120.00244 * 17.85315 * 19 17 16 21 21 Si 1.86804 * 120.00028 * 197.85693 * 19 17 16 22 22 H 1.48496 * 109.47066 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47417 * 119.99935 * 21 19 17 24 24 H 1.48503 * 109.47002 * 239.99767 * 21 19 17 25 25 C 1.40719 * 119.51046 * 359.70412 * 16 15 14 26 26 C 1.37618 * 119.74314 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.47297 * 270.02612 * 1 2 3 28 28 H 1.09000 * 109.46782 * 30.02428 * 1 2 3 29 29 H 1.09000 * 109.47365 * 150.02159 * 1 2 3 30 30 H 1.08998 * 109.46837 * 89.97512 * 5 4 3 31 31 H 1.08995 * 109.47134 * 209.97901 * 5 4 3 32 32 H 1.08998 * 109.47259 * 329.98108 * 5 4 3 33 33 H 1.07994 * 126.13050 * 180.23695 * 6 4 3 34 34 H 1.08998 * 109.47168 * 144.69282 * 8 7 6 35 35 H 1.08997 * 109.47367 * 24.69222 * 8 7 6 36 36 H 1.08999 * 109.47575 * 59.99812 * 12 11 9 37 37 H 1.09002 * 109.47147 * 299.99220 * 12 11 9 38 38 H 1.08000 * 119.87053 * 359.96934 * 14 13 12 39 39 H 1.07998 * 120.12413 * 180.27440 * 15 14 13 40 40 H 0.96997 * 120.00535 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.12523 * 179.97438 * 25 16 15 42 42 H 1.08004 * 119.87152 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6142 -0.7153 0.0063 7 6 2.3271 -1.1330 0.0006 8 6 1.8599 -2.5658 0.0012 9 6 1.5865 -3.0056 -1.4140 10 8 1.7542 -2.2349 -2.3293 11 8 1.1565 -4.2536 -1.6578 12 6 0.9141 -4.6081 -3.0447 13 6 0.4398 -6.0365 -3.1226 14 6 1.3626 -7.0609 -3.2677 15 6 0.9411 -8.3692 -3.3340 16 6 -0.4330 -8.6644 -3.2662 17 6 -0.8781 -10.0044 -3.3402 18 1 -1.8800 -10.2227 -3.6793 19 6 -0.0205 -11.0478 -2.9739 20 7 1.0388 -10.7994 -2.2475 21 14 -0.3882 -12.7953 -3.5223 22 1 -1.6358 -12.8092 -4.3275 23 1 0.7385 -13.3032 -4.3455 24 1 -0.5599 -13.6627 -2.3292 25 6 -1.3610 -7.6161 -3.1247 26 6 -0.9164 -6.3156 -3.0538 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 5.0823 1.7168 1.0278 31 1 5.6096 0.9977 -0.5127 32 1 4.5566 2.4328 -0.5145 33 1 4.4890 -1.3485 0.0118 34 1 0.9469 -2.6499 0.5907 35 1 2.6327 -3.1997 0.4358 36 1 1.8373 -4.4999 -3.6141 37 1 0.1516 -3.9494 -3.4602 38 1 2.4164 -6.8314 -3.3248 39 1 1.6620 -9.1660 -3.4426 40 1 1.6334 -11.5226 -1.9939 41 1 -2.4181 -7.8313 -3.0720 42 1 -1.6269 -5.5094 -2.9456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835272684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = -16.358879 kcal Electronic energy + Delta-G solvation = -24373.129277 eV Core-core repulsion = 20704.697229 eV Total energy + Delta-G solvation = -3668.432048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33032 -41.17436 -39.44468 -37.41787 -35.65577 -35.14455 -33.19359 -32.47678 -31.20952 -30.60842 -29.34955 -28.44322 -26.03554 -25.30140 -22.93826 -22.55100 -21.79391 -21.52347 -20.41242 -19.25438 -18.57348 -17.79657 -17.49272 -17.17979 -17.00714 -16.37759 -15.82592 -15.58538 -15.50421 -15.18943 -14.60001 -14.42389 -14.27867 -14.11725 -13.89714 -13.83093 -13.66040 -13.50958 -13.27844 -13.02147 -12.94817 -12.82858 -12.71930 -12.65978 -12.57162 -12.07390 -11.66392 -11.54862 -11.49102 -11.35576 -11.25681 -11.02588 -10.17995 -9.43704 -9.37290 -9.27905 -8.67169 -6.37728 0.74215 0.91749 1.13108 1.34591 1.39236 1.42276 1.55191 1.59254 1.67316 2.20185 2.26951 2.77548 3.53366 3.71151 3.87085 3.95167 4.13885 4.14210 4.18839 4.25727 4.38563 4.42489 4.44267 4.50778 4.57784 4.62676 4.67657 4.72381 4.77362 4.98147 5.02666 5.08237 5.09048 5.13932 5.32715 5.41652 5.61792 5.67246 5.71992 5.91391 6.07603 6.13068 6.17020 6.33991 6.66392 6.72781 6.90423 6.91997 6.99335 8.29678 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.002178 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.230694 B =12852.065996 C =13222.283670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.076 3.924 3 N -0.337 5.337 4 N -0.381 5.381 5 C 0.094 3.906 6 C 0.075 3.925 7 C -0.250 4.250 8 C -0.025 4.025 9 C 0.455 3.545 10 O -0.542 6.542 11 O -0.362 6.362 12 C 0.142 3.858 13 C -0.228 4.228 14 C -0.081 4.081 15 C -0.194 4.194 16 C 0.086 3.914 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.034 3.966 20 N -0.818 5.818 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.245 4.245 26 C -0.066 4.066 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.207 0.793 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.290 0.710 41 H 0.102 0.898 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 16.190 6.980 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.162 5.162 5 C -0.045 4.045 6 C -0.072 4.072 7 C -0.261 4.261 8 C -0.064 4.064 9 C 0.300 3.700 10 O -0.432 6.432 11 O -0.279 6.279 12 C 0.069 3.931 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.084 3.916 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.443 5.443 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.188 1.188 24 H -0.190 1.190 25 C -0.264 4.264 26 C -0.084 4.084 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.224 0.776 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.325 17.688 6.798 20.317 hybrid contribution -0.005 -1.578 -0.478 1.649 sum 7.320 16.110 6.320 18.790 Atomic orbital electron populations 1.20248 0.85751 1.03254 1.04013 1.22592 0.97889 0.90436 0.98089 1.77212 0.87796 1.23582 1.27528 1.48677 1.05744 1.05416 1.56339 1.22189 0.82770 0.94817 1.04766 1.22850 0.99770 0.85286 0.99289 1.19529 0.92813 0.94623 1.19144 1.19619 1.06058 0.92013 0.88661 1.24563 0.72417 0.79208 0.93820 1.90616 1.49767 1.54650 1.48183 1.86688 1.76686 1.31982 1.32582 1.21484 1.00014 0.92746 0.78810 1.19009 0.93532 0.92757 1.17615 1.20776 0.97859 0.92708 0.98573 1.21267 0.96339 0.95159 1.08538 1.18050 0.92391 0.93693 0.87498 1.19936 1.00632 0.91380 1.40194 0.90302 1.26815 0.93581 1.05885 0.91860 1.69873 1.12458 1.36759 1.25207 0.85129 0.79672 0.75630 0.79114 1.18130 1.18843 1.18957 1.21180 0.98365 0.93107 1.13780 1.20714 0.94660 0.95813 0.97237 0.88385 0.90975 0.90909 0.89068 0.86975 0.89455 0.77639 0.85356 0.84706 0.91724 0.91296 0.87547 0.87763 0.89884 0.87943 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.21 71.24 0.73 -0.77 16 2 C 0.08 1.91 7.22 43.10 0.31 2.22 16 3 N -0.34 -9.01 12.58 -47.39 -0.60 -9.61 16 4 N -0.38 -7.83 4.01 -369.58 -1.48 -9.31 16 5 C 0.09 0.99 11.47 127.77 1.47 2.45 16 6 C 0.08 1.46 11.40 83.54 0.95 2.41 16 7 C -0.25 -5.73 4.59 -20.14 -0.09 -5.83 16 8 C -0.03 -0.53 5.93 29.10 0.17 -0.36 16 9 C 0.46 13.69 7.95 71.24 0.57 14.25 16 10 O -0.54 -19.42 15.78 21.96 0.35 -19.07 16 11 O -0.36 -12.58 10.20 -51.45 -0.53 -13.10 16 12 C 0.14 5.21 5.58 71.24 0.40 5.61 16 13 C -0.23 -9.84 5.54 -19.67 -0.11 -9.94 16 14 C -0.08 -3.75 9.67 22.22 0.21 -3.54 16 15 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 16 C 0.09 4.63 5.57 -21.29 -0.12 4.51 16 17 C -0.49 -26.19 9.05 23.46 0.21 -25.98 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 19 C 0.03 1.70 5.14 85.26 0.44 2.14 16 20 N -0.82 -41.94 10.95 21.82 0.24 -41.70 16 21 Si 0.98 37.24 29.60 68.60 2.03 39.27 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 C -0.24 -11.95 9.80 22.73 0.22 -11.73 16 26 C -0.07 -2.89 9.67 22.22 0.21 -2.68 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.13 2.22 8.09 -2.39 -0.02 2.21 16 35 H 0.14 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 37 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 38 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 40 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 41 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -70.65 367.58 6.81 -63.85 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 1.02 Total: 26.85 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 5.77 Total: -37.17 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -1.84 Total: -60.62 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.18 Total: -32.18 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -70.65 6.81 -63.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835272684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.487 kcal (2) G-P(sol) polarization free energy of solvation -70.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds