Wall clock time and date at job start Tue Mar 31 2020 10:31:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35898 * 117.00793 * 2 1
4 4 C 1.39829 * 119.63709 * 0.35613 * 3 2 1
5 5 C 1.36030 * 121.02678 * 180.28466 * 4 3 2
6 6 C 1.40577 * 119.89312 * 359.40462 * 5 4 3
7 7 N 1.33820 * 120.76145 * 180.27722 * 6 5 4
8 8 C 1.30797 * 121.73603 * 179.97438 * 7 6 5
9 9 C 1.50694 * 119.22673 * 180.02562 * 8 7 6
10 10 C 1.40609 * 121.54294 * 0.02562 * 8 7 6
11 11 C 1.47755 * 120.26789 * 179.97438 * 10 8 7
12 12 O 1.21563 * 120.00665 * 305.94758 * 11 10 8
13 13 N 1.34778 * 119.99803 * 125.94123 * 11 10 8
14 14 C 1.46502 * 120.00055 * 4.37146 * 13 11 10
15 15 C 1.46499 * 120.00559 * 184.36678 * 13 11 10
16 16 C 1.50701 * 109.47047 * 89.99902 * 15 13 11
17 17 H 1.08005 * 119.99764 * 0.02562 * 16 15 13
18 18 C 1.37880 * 120.00065 * 180.02562 * 16 15 13
19 19 N 1.31510 * 119.99712 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 119.99852 * 180.02562 * 18 16 15
21 21 H 1.48499 * 109.47496 * 89.99955 * 20 18 16
22 22 H 1.48509 * 109.46966 * 209.99973 * 20 18 16
23 23 H 1.48503 * 109.47377 * 329.99954 * 20 18 16
24 24 C 1.38994 * 119.45802 * 359.97438 * 10 8 7
25 25 C 1.40562 * 117.97270 * 359.97438 * 24 10 8
26 26 C 1.36602 * 119.64999 * 180.02562 * 3 2 1
27 27 H 1.09004 * 109.47222 * 59.99527 * 1 2 3
28 28 H 1.08993 * 109.47123 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.46792 * 300.00280 * 1 2 3
30 30 H 1.07991 * 119.48685 * 359.96703 * 4 3 2
31 31 H 1.08002 * 120.05364 * 179.68456 * 5 4 3
32 32 H 1.08992 * 109.47477 * 85.31425 * 9 8 7
33 33 H 1.09000 * 109.46985 * 205.31570 * 9 8 7
34 34 H 1.09001 * 109.47070 * 325.30952 * 9 8 7
35 35 H 1.09000 * 109.47192 * 84.69773 * 14 13 11
36 36 H 1.08995 * 109.47540 * 204.70754 * 14 13 11
37 37 H 1.09009 * 109.46725 * 324.70870 * 14 13 11
38 38 H 1.08991 * 109.47626 * 210.00492 * 15 13 11
39 39 H 1.09002 * 109.47082 * 330.00585 * 15 13 11
40 40 H 0.97001 * 119.99760 * 180.02562 * 19 18 16
41 41 H 1.07998 * 121.01518 * 179.97438 * 24 10 8
42 42 H 1.07998 * 120.20426 * 0.02562 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2108 0.0000
4 6 1.2773 2.3787 0.0076
5 6 1.8654 3.6053 0.0020
6 6 3.2673 3.7101 0.0011
7 7 3.8640 4.9079 0.0012
8 6 5.1665 5.0276 0.0008
9 6 5.7789 6.4045 0.0016
10 6 6.0087 3.9016 -0.0002
11 6 7.4767 4.0696 -0.0011
12 8 8.0099 4.7530 -0.8534
13 7 8.2247 3.4651 0.9431
14 6 7.5941 2.5652 1.9121
15 6 9.6683 3.7077 1.0006
16 6 9.9440 4.8880 1.8962
17 1 9.1257 5.4053 2.3751
18 6 11.2409 5.3074 2.1043
19 7 12.2372 4.6777 1.5208
20 14 11.5827 6.7698 3.2150
21 1 11.7746 6.2980 4.6099
22 1 12.8114 7.4650 2.7541
23 1 10.4338 7.7094 3.1640
24 6 5.4490 2.6294 -0.0003
25 6 4.0472 2.5258 0.0011
26 6 3.4107 1.2737 -0.0005
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 0.1999 2.3059 0.0128
31 1 1.2563 4.4972 0.0028
32 1 5.8501 6.7700 1.0259
33 1 6.7752 6.3593 -0.4382
34 1 5.1542 7.0803 -0.5827
35 1 7.5113 1.5676 1.4811
36 1 8.2016 2.5213 2.8160
37 1 6.6000 2.9375 2.1602
38 1 10.1696 2.8252 1.3978
39 1 10.0417 3.9173 -0.0018
40 1 13.1496 4.9726 1.6675
41 1 6.0721 1.7473 -0.0015
42 1 3.9964 0.3664 -0.0014
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000843418920.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:36
Heat of formation + Delta-G solvation = -34.285321 kcal
Electronic energy + Delta-G solvation = -25527.991016 eV
Core-core repulsion = 21858.781619 eV
Total energy + Delta-G solvation = -3669.209397 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.25236 -40.89371 -39.87303 -37.23379 -36.68902 -35.04489 -34.37144 -32.58502
-31.62537 -29.78819 -28.85137 -27.73277 -27.52596 -25.90032 -24.43471 -23.53285
-23.14565 -20.98130 -19.27434 -19.12194 -18.68292 -17.98062 -17.65190 -17.32599
-16.69148 -16.52012 -16.18932 -15.94273 -15.61927 -15.53764 -15.00230 -14.61502
-14.57117 -14.32004 -14.14150 -14.00184 -13.71610 -13.60190 -13.47366 -13.16048
-13.06970 -12.95732 -12.85322 -12.73624 -12.55623 -12.21331 -12.05604 -11.75204
-11.59249 -11.41997 -11.08734 -10.63655 -10.49108 -9.72031 -9.50567 -8.90871
-8.22660 -6.37074 -0.81921 -0.39490 0.81801 1.37702 1.40465 1.48346
1.52198 1.85068 2.21781 2.34527 2.41893 2.94000 3.07446 3.09296
3.40812 3.51534 3.60065 3.71625 3.89274 3.98552 4.25135 4.30736
4.41071 4.46925 4.50125 4.53797 4.62877 4.63167 4.71710 4.77040
4.80733 4.86167 4.92322 4.99220 5.04581 5.16419 5.19047 5.22532
5.38517 5.52650 5.57747 5.78740 6.04267 6.34238 6.57575 6.71240
6.78533 7.19279 7.36404 8.84757
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.024576 B = 0.003068 C = 0.002897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1139.069515 B = 9124.499150 C = 9662.596709
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.328 6.328
3 C 0.126 3.874
4 C -0.150 4.150
5 C -0.064 4.064
6 C 0.092 3.908
7 N -0.479 5.479
8 C 0.178 3.822
9 C -0.118 4.118
10 C -0.173 4.173
11 C 0.554 3.446
12 O -0.577 6.577
13 N -0.596 5.596
14 C 0.077 3.923
15 C 0.258 3.742
16 C -0.544 4.544
17 H 0.053 0.947
18 C 0.011 3.989
19 N -0.927 5.927
20 Si 0.966 3.034
21 H -0.264 1.264
22 H -0.281 1.281
23 H -0.272 1.272
24 C -0.020 4.020
25 C -0.080 4.080
26 C -0.144 4.144
27 H 0.069 0.931
28 H 0.118 0.882
29 H 0.070 0.930
30 H 0.174 0.826
31 H 0.158 0.842
32 H 0.083 0.917
33 H 0.072 0.928
34 H 0.094 0.906
35 H 0.080 0.920
36 H 0.076 0.924
37 H 0.072 0.928
38 H 0.031 0.969
39 H 0.005 0.995
40 H 0.268 0.732
41 H 0.166 0.834
42 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.760 -9.728 -0.169 28.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.242 6.242
3 C 0.080 3.920
4 C -0.170 4.170
5 C -0.082 4.082
6 C -0.030 4.030
7 N -0.188 5.188
8 C 0.025 3.975
9 C -0.175 4.175
10 C -0.179 4.179
11 C 0.341 3.659
12 O -0.458 6.458
13 N -0.326 5.326
14 C -0.065 4.065
15 C 0.138 3.862
16 C -0.582 4.582
17 H 0.072 0.928
18 C -0.189 4.189
19 N -0.566 5.566
20 Si 0.790 3.210
21 H -0.189 1.189
22 H -0.206 1.206
23 H -0.196 1.196
24 C -0.046 4.046
25 C -0.082 4.082
26 C -0.164 4.164
27 H 0.088 0.912
28 H 0.137 0.863
29 H 0.089 0.911
30 H 0.191 0.809
31 H 0.175 0.825
32 H 0.102 0.898
33 H 0.091 0.909
34 H 0.112 0.888
35 H 0.099 0.901
36 H 0.095 0.905
37 H 0.090 0.910
38 H 0.049 0.951
39 H 0.023 0.977
40 H 0.077 0.923
41 H 0.183 0.817
42 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -26.818 -8.911 -0.594 28.266
hybrid contribution 1.278 0.239 0.358 1.349
sum -25.540 -8.672 -0.237 26.973
Atomic orbital electron populations
1.23448 0.76033 1.05930 1.02726 1.86108 1.23802 1.25935 1.88341
1.18753 0.92022 0.85182 0.96006 1.21469 1.02313 0.90685 1.02533
1.20865 0.90930 0.99284 0.97136 1.19382 0.95569 0.87790 1.00217
1.67770 1.10299 1.26358 1.14325 1.21360 0.88467 0.95551 0.92138
1.20944 1.01464 0.91363 1.03765 1.20708 0.93385 0.95998 1.07773
1.18404 0.86567 0.79456 0.81455 1.90701 1.74189 1.41528 1.39397
1.48102 1.09536 1.44833 1.30138 1.22016 0.98436 0.93241 0.92808
1.18884 0.75271 0.95984 0.96107 1.21666 0.92677 1.15080 1.28788
0.92829 1.25814 0.95724 0.99816 0.97500 1.70042 0.99810 1.42330
1.44429 0.85442 0.77651 0.78902 0.79015 1.18946 1.20602 1.19629
1.22082 0.94090 0.96555 0.91871 1.18477 0.93080 0.94371 1.02274
1.20209 0.92743 0.96707 1.06736 0.91196 0.86347 0.91111 0.80910
0.82466 0.89837 0.90947 0.88766 0.90136 0.90538 0.90965 0.95123
0.97663 0.92336 0.81659 0.82930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.80 113.37 1.11 1.19 16
2 O -0.33 -4.86 10.47 -92.40 -0.97 -5.83 16
3 C 0.13 2.17 6.64 22.27 0.15 2.32 16
4 C -0.15 -2.13 8.94 22.14 0.20 -1.94 16
5 C -0.06 -1.21 9.96 22.33 0.22 -0.99 16
6 C 0.09 2.48 6.61 40.29 0.27 2.74 16
7 N -0.48 -15.08 10.20 -175.78 -1.79 -16.87 16
8 C 0.18 6.22 6.82 43.29 0.30 6.51 16
9 C -0.12 -4.09 9.84 71.23 0.70 -3.39 16
10 C -0.17 -6.16 4.72 -20.00 -0.09 -6.26 16
11 C 0.55 24.52 6.54 86.76 0.57 25.08 16
12 O -0.58 -30.63 14.59 -3.91 -0.06 -30.69 16
13 N -0.60 -26.00 2.86 -854.67 -2.44 -28.44 16
14 C 0.08 2.44 9.17 127.77 1.17 3.61 16
15 C 0.26 13.91 5.17 85.63 0.44 14.35 16
16 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16
17 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16
18 C 0.01 0.62 5.46 84.66 0.46 1.08 16
19 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16
20 Si 0.97 44.76 29.54 68.60 2.03 46.79 16
21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16
24 C -0.02 -0.56 7.83 23.02 0.18 -0.38 16
25 C -0.08 -2.03 5.74 -21.29 -0.12 -2.15 16
26 C -0.14 -2.92 9.68 22.43 0.22 -2.70 16
27 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16
28 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16
29 H 0.07 0.24 7.62 -2.39 -0.02 0.23 16
30 H 0.17 1.12 6.22 -2.92 -0.02 1.10 16
31 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16
32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16
33 H 0.07 3.00 5.46 -2.39 -0.01 2.98 16
34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16
35 H 0.08 1.99 7.31 -2.39 -0.02 1.97 16
36 H 0.08 2.46 8.03 -2.39 -0.02 2.44 16
37 H 0.07 2.06 6.48 -2.38 -0.02 2.05 16
38 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16
39 H 0.01 0.32 7.37 -2.39 -0.02 0.31 16
40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16
41 H 0.17 3.81 6.87 -2.91 -0.02 3.79 16
42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16
Total: -1.00 -76.26 352.30 4.10 -72.16
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: 1.05 Total: 10.20 kcal
Atomic # 6 Polarization: 2.10 SS G_CDS: 6.01 Total: 8.11 kcal
Atomic # 7 Polarization: -96.78 SS G_CDS: -3.95 Total: -100.73 kcal
Atomic # 8 Polarization: -35.50 SS G_CDS: -1.02 Total: -36.52 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -76.26 4.10 -72.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000843418920.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.871 kcal
(2) G-P(sol) polarization free energy of solvation -76.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds