Wall clock time and date at job start Tue Mar 31 2020 11:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36022 * 120.33737 * 2 1 4 4 C 1.40465 * 119.69536 * 180.02562 * 3 2 1 5 5 C 1.34950 * 120.30354 * 0.02562 * 4 3 2 6 6 N 1.36484 * 120.60893 * 0.02562 * 5 4 3 7 7 C 1.36837 * 132.57584 * 180.30663 * 6 5 4 8 8 C 1.35101 * 107.18310 * 180.09831 * 7 6 5 9 9 C 1.50701 * 125.68782 * 179.87732 * 8 7 6 10 10 C 1.50703 * 109.46952 * 124.71912 * 9 8 7 11 11 O 1.20824 * 119.99868 * 359.97438 * 10 9 8 12 12 O 1.34232 * 119.99981 * 180.02562 * 10 9 8 13 13 C 1.45193 * 117.00307 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47629 * 179.97438 * 13 12 10 15 15 C 1.50698 * 115.55091 * 294.88972 * 14 13 12 16 16 H 1.07995 * 120.00548 * 95.15680 * 15 14 13 17 17 C 1.37887 * 119.99607 * 274.88498 * 15 14 13 18 18 N 1.31512 * 119.99742 * 6.38500 * 17 15 14 19 19 Si 1.86792 * 120.00001 * 186.38825 * 17 15 14 20 20 H 1.48497 * 109.47138 * 89.99854 * 19 17 15 21 21 H 1.48507 * 109.46983 * 210.00016 * 19 17 15 22 22 H 1.48507 * 109.47143 * 329.99898 * 19 17 15 23 23 C 1.53001 * 117.49567 * 80.55078 * 14 13 12 24 24 C 1.52997 * 117.50058 * 149.21087 * 14 13 12 25 25 N 1.33518 * 108.62257 * 359.61383 * 8 7 6 26 26 C 1.32548 * 109.16229 * 0.24210 * 25 8 7 27 27 H 1.08997 * 109.47765 * 269.93773 * 1 2 3 28 28 H 1.09005 * 109.47461 * 29.94413 * 1 2 3 29 29 H 1.09002 * 109.47064 * 149.93527 * 1 2 3 30 30 H 1.08002 * 120.14885 * 0.03810 * 3 2 1 31 31 H 1.08009 * 119.85015 * 180.02562 * 4 3 2 32 32 H 1.07994 * 119.70119 * 180.02562 * 5 4 3 33 33 H 1.08001 * 126.40442 * 359.96010 * 7 6 5 34 34 H 1.09001 * 109.47186 * 4.71981 * 9 8 7 35 35 H 1.09000 * 109.47233 * 244.71570 * 9 8 7 36 36 H 1.09004 * 109.47351 * 59.98882 * 13 12 10 37 37 H 1.09010 * 109.46838 * 299.99816 * 13 12 10 38 38 H 0.97004 * 120.00151 * 179.97438 * 18 17 15 39 39 H 1.09003 * 117.50064 * 215.00337 * 23 14 13 40 40 H 1.08997 * 117.50444 * 0.02833 * 23 14 13 41 41 H 1.08997 * 117.50286 * 359.97438 * 24 14 13 42 42 H 1.09000 * 117.49777 * 144.98214 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5985 1.1582 -0.0005 5 6 4.2664 -0.0145 -0.0016 6 7 3.5895 -1.1996 -0.0027 7 6 4.0054 -2.5033 0.0016 8 6 2.8971 -3.2758 -0.0044 9 6 2.8758 -4.7827 -0.0053 10 6 2.0536 -5.2741 1.1581 11 8 1.5383 -4.4820 1.9110 12 8 1.8947 -6.5918 1.3586 13 6 1.0897 -6.9929 2.4984 14 6 1.0221 -8.5199 2.5632 15 6 0.3113 -9.1884 1.4148 16 1 0.8761 -9.5585 0.5720 17 6 -1.0597 -9.3326 1.4428 18 7 -1.7597 -8.7777 2.4080 19 14 -1.9228 -10.3161 0.1097 20 1 -2.0136 -11.7390 0.5247 21 1 -3.2891 -9.7734 -0.0997 22 1 -1.1517 -10.2178 -1.1557 23 6 2.2146 -9.2542 3.1795 24 6 0.8923 -9.1633 3.9452 25 7 1.8238 -2.4817 -0.0036 26 6 2.2188 -1.2164 -0.0025 27 1 -0.3634 -0.0011 1.0276 28 1 -0.3634 0.8905 -0.5130 29 1 -0.3633 -0.8894 -0.5148 30 1 1.6619 2.1138 0.0006 31 1 4.1466 2.0889 -0.0001 32 1 5.3463 -0.0152 -0.0016 33 1 5.0284 -2.8497 0.0063 34 1 3.8943 -5.1605 0.0842 35 1 2.4365 -5.1393 -0.9370 36 1 0.0827 -6.5891 2.3922 37 1 1.5400 -6.6095 3.4142 38 1 -2.7242 -8.8787 2.4275 39 1 2.4849 -10.2208 2.7544 40 1 3.0470 -8.6494 3.5392 41 1 0.8553 -8.4988 4.8084 42 1 0.2923 -10.0700 4.0239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849727858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:20 Heat of formation + Delta-G solvation = 26.129945 kcal Electronic energy + Delta-G solvation = -25068.462716 eV Core-core repulsion = 21401.873121 eV Total energy + Delta-G solvation = -3666.589595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90276 -39.58166 -37.77275 -36.65300 -35.08628 -34.62356 -32.19232 -31.90664 -30.40585 -28.22701 -27.18040 -26.46138 -25.14314 -22.96383 -22.49042 -21.35311 -21.04059 -19.73932 -19.18405 -17.67690 -17.21349 -16.74929 -16.43733 -15.90739 -15.77116 -15.52493 -14.99605 -14.55663 -14.39143 -14.20374 -13.80075 -13.39361 -13.14452 -13.08682 -12.85258 -12.64166 -12.04477 -11.97152 -11.87342 -11.73567 -11.54242 -11.47654 -10.94974 -10.78125 -10.71038 -10.49350 -10.24132 -10.02372 -9.84710 -9.72285 -9.46298 -8.77068 -8.75827 -8.42097 -8.15270 -7.88715 -6.01633 -4.06748 0.57444 1.14735 2.45329 2.68794 2.95561 3.32612 3.34237 3.39926 3.43287 3.65109 4.04230 4.22287 4.44030 4.48457 4.59097 4.76933 5.02146 5.14615 5.15152 5.27202 5.30196 5.37725 5.55081 5.57086 5.62574 5.65948 5.74713 5.79517 5.94802 6.06260 6.13434 6.30536 6.36688 6.40077 6.53200 6.61218 6.72930 6.79382 6.97150 7.07310 7.38437 7.41851 7.55454 7.89052 7.91633 8.42934 8.61775 8.94729 9.58881 11.07878 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002878 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.224681 B = 9725.658335 C =10333.629801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.034 4.034 3 C -0.121 4.121 4 C -0.139 4.139 5 C 0.046 3.954 6 N -0.362 5.362 7 C -0.090 4.090 8 C 0.076 3.924 9 C -0.034 4.034 10 C 0.454 3.546 11 O -0.504 6.504 12 O -0.340 6.340 13 C 0.118 3.882 14 C 0.039 3.961 15 C -0.490 4.490 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.206 4.206 24 C -0.147 4.147 25 N -0.454 5.454 26 C 0.221 3.779 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.185 0.815 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 19.206 -5.747 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 C -0.145 4.145 4 C -0.160 4.160 5 C -0.076 4.076 6 N -0.034 5.034 7 C -0.221 4.221 8 C -0.058 4.058 9 C -0.072 4.072 10 C 0.296 3.704 11 O -0.392 6.392 12 O -0.256 6.256 13 C 0.045 3.955 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.243 4.243 24 C -0.184 4.184 25 N -0.173 5.173 26 C -0.023 4.023 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.202 0.798 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.351 19.110 -5.424 22.879 hybrid contribution 0.341 -0.146 -0.413 0.555 sum 11.693 18.963 -5.837 23.030 Atomic orbital electron populations 1.20692 0.88883 1.03514 1.03303 1.19073 0.97063 0.88380 0.99094 1.20873 0.93698 0.97757 1.02174 1.20732 0.94790 0.97016 1.03443 1.21532 0.98486 0.83347 1.04248 1.42771 1.08825 1.05899 1.45876 1.22307 1.00841 0.80601 1.18375 1.20150 0.88389 0.94972 1.02268 1.19566 1.01839 0.87829 0.97987 1.23110 0.79624 0.81952 0.85721 1.90651 1.45919 1.56600 1.46077 1.86489 1.65879 1.23393 1.49856 1.22839 0.93423 0.96505 0.82715 1.18775 0.95809 0.87580 0.93968 1.20394 0.91166 1.37699 1.03489 0.91831 1.25019 0.97426 0.95235 0.95797 1.70001 1.06579 1.42699 1.32472 0.86583 0.78907 0.80207 0.82282 1.20644 1.21253 1.19697 1.23001 0.91564 1.02331 1.07379 1.22541 0.98435 1.02619 0.94841 1.70667 1.29168 0.97521 1.19955 1.20810 0.80087 0.94395 1.06994 0.90318 0.91033 0.90111 0.84255 0.83417 0.82229 0.79822 0.86475 0.86159 0.90642 0.94583 0.92931 0.90095 0.91585 0.91702 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.03 36.00 0.36 -0.78 16 2 C -0.03 -0.40 5.90 -104.40 -0.62 -1.02 16 3 C -0.12 -1.05 9.72 -39.54 -0.38 -1.43 16 4 C -0.14 -1.01 9.98 -39.91 -0.40 -1.41 16 5 C 0.05 0.39 10.95 -16.65 -0.18 0.21 16 6 N -0.36 -4.52 2.95 -62.66 -0.18 -4.71 16 7 C -0.09 -1.11 11.63 -16.43 -0.19 -1.30 16 8 C 0.08 1.18 5.85 -82.97 -0.49 0.70 16 9 C -0.03 -0.50 6.37 -29.03 -0.19 -0.68 16 10 C 0.45 9.26 7.95 36.01 0.29 9.54 16 11 O -0.50 -11.88 15.31 -18.75 -0.29 -12.17 16 12 O -0.34 -7.71 10.16 -39.26 -0.40 -8.11 16 13 C 0.12 2.93 5.28 37.15 0.20 3.13 16 14 C 0.04 1.00 1.61 -155.67 -0.25 0.75 16 15 C -0.49 -13.61 8.77 -34.44 -0.30 -13.92 16 16 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 17 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 18 N -0.88 -25.44 12.93 55.43 0.72 -24.72 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 24 C -0.15 -3.49 9.43 -26.69 -0.25 -3.74 16 25 N -0.45 -8.14 10.66 -9.00 -0.10 -8.24 16 26 C 0.22 3.33 7.52 -156.04 -1.17 2.16 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 0.56 8.06 -52.48 -0.42 0.13 16 32 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 2.09 8.13 -51.93 -0.42 1.66 16 37 H 0.04 0.85 8.09 -51.92 -0.42 0.43 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -35.59 366.92 -9.56 -45.15 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.88 Total: 1.64 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.94 Total: -10.80 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.44 Total: -37.67 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.69 Total: -20.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.59 -9.56 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849727858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.277 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds