Wall clock time and date at job start Tue Mar 31 2020 11:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38067 * 119.57681 * 2 1 4 4 C 1.38841 * 119.32882 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.74285 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.47079 * 270.02113 * 5 4 3 7 7 C 1.38337 * 118.50385 * 359.97438 * 4 3 2 8 8 C 1.39094 * 119.10236 * 0.02562 * 7 4 3 9 9 N 1.39004 * 119.70597 * 179.97438 * 8 7 4 10 10 C 1.46503 * 119.99773 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46929 * 180.02562 * 10 9 8 12 12 C 1.38295 * 119.93297 * 89.99901 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.25412 * 12 11 10 14 14 C 1.38882 * 119.93206 * 359.47410 * 13 12 11 15 15 O 1.35746 * 120.07145 * 180.25590 * 14 13 12 16 16 C 1.34834 * 117.00340 * 174.73672 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05417 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05311 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46962 * 120.00033 * 20 18 16 23 23 H 1.48499 * 109.47083 * 240.00124 * 20 18 16 24 24 C 1.38876 * 119.85943 * 0.52538 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72571 * 24 14 13 26 26 N 1.31948 * 119.57142 * 180.26810 * 2 1 3 27 27 H 1.09001 * 109.46707 * 89.99944 * 1 2 3 28 28 H 1.08998 * 109.47310 * 210.00560 * 1 2 3 29 29 H 1.09006 * 109.46963 * 330.00704 * 1 2 3 30 30 H 1.08005 * 120.33216 * 0.03923 * 3 2 1 31 31 H 1.09001 * 109.47785 * 30.02048 * 5 4 3 32 32 H 1.08998 * 109.47040 * 150.02722 * 5 4 3 33 33 H 0.96706 * 113.99886 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.44466 * 179.97438 * 7 4 3 35 35 H 0.96997 * 120.00372 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.47074 * 60.00602 * 10 9 8 37 37 H 1.09003 * 109.47105 * 299.99756 * 10 9 8 38 38 H 1.08000 * 119.96836 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03655 * 179.72759 * 13 12 11 40 40 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03796 * 179.70626 * 24 14 13 42 42 H 1.07997 * 119.96864 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5769 1.1948 -0.0005 5 6 4.3528 2.4866 -0.0011 6 8 4.5972 2.8949 -1.3487 7 6 4.2318 -0.0238 -0.0005 8 6 3.4815 -1.1950 -0.0005 9 7 4.1267 -2.4263 -0.0010 10 6 5.5905 -2.4863 -0.0022 11 6 6.0342 -3.9265 -0.0032 12 6 6.2364 -4.5854 -1.2021 13 6 6.6380 -5.9067 -1.2063 14 6 6.8493 -6.5706 -0.0049 15 8 7.2490 -7.8679 -0.0057 16 6 7.5409 -8.4193 1.1896 17 1 7.3742 -7.8591 2.0978 18 6 8.0550 -9.7055 1.2527 19 7 8.2584 -10.3876 0.1464 20 14 8.4600 -10.4691 2.9087 21 1 8.1427 -9.5025 3.9905 22 1 7.6541 -11.7024 3.0955 23 1 9.9046 -10.8097 2.9567 24 6 6.6453 -5.9061 1.1975 25 6 6.2387 -4.5864 1.1950 26 7 2.1582 -1.1476 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6470 2.1353 0.0006 31 1 3.7774 3.2564 0.5130 32 1 5.3032 2.3398 0.5119 33 1 5.0938 3.7211 -1.4254 34 1 5.3110 -0.0650 -0.0014 35 1 3.6077 -3.2458 -0.0014 36 1 5.9752 -1.9879 0.8876 37 1 5.9738 -1.9877 -0.8925 38 1 6.0759 -4.0675 -2.1361 39 1 6.7915 -6.4221 -2.1429 40 1 8.6177 -11.2876 0.1906 41 1 6.8041 -6.4210 2.1334 42 1 6.0795 -4.0692 2.1297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853261301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:49 Heat of formation + Delta-G solvation = -16.815187 kcal Electronic energy + Delta-G solvation = -24105.692172 eV Core-core repulsion = 20437.240337 eV Total energy + Delta-G solvation = -3668.451835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44477 -39.18501 -37.38052 -37.03952 -35.48605 -33.19360 -32.49379 -31.70684 -30.28762 -29.33366 -27.32984 -26.74931 -25.87908 -24.74953 -22.07660 -21.84680 -21.37236 -20.40103 -18.09618 -17.81409 -17.57932 -16.96450 -16.64530 -15.76921 -15.15172 -15.01203 -14.63589 -14.56902 -14.47409 -14.30779 -13.85910 -13.66886 -13.61107 -13.45595 -13.19219 -12.80115 -12.60101 -12.42382 -12.16840 -12.04261 -11.86543 -11.70983 -11.36902 -10.94472 -10.80719 -10.71532 -10.48389 -10.44774 -10.15086 -9.52347 -9.46847 -9.42137 -8.93247 -8.29936 -7.62618 -7.35332 -6.54082 -4.12914 1.15702 1.37994 2.03758 2.12181 3.06403 3.08903 3.14632 3.35347 3.69954 3.89495 4.13571 4.40580 4.48990 4.64434 4.81173 4.94074 5.00597 5.08742 5.11721 5.18417 5.19337 5.26742 5.32751 5.45680 5.50954 5.55959 5.62672 5.69574 5.77065 5.83567 6.00020 6.11065 6.28799 6.32480 6.54400 6.58518 6.78765 6.94626 7.08413 7.12832 7.23706 7.25083 7.33945 7.68610 7.71605 7.90720 8.23014 8.91304 9.59310 10.63476 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.002177 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.190723 B =12858.833069 C =13216.757908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 C -0.225 4.225 4 C -0.008 4.008 5 C 0.118 3.882 6 O -0.565 6.565 7 C -0.229 4.229 8 C 0.411 3.589 9 N -0.714 5.714 10 C 0.187 3.813 11 C -0.215 4.215 12 C -0.052 4.052 13 C -0.195 4.195 14 C 0.162 3.838 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.237 4.237 25 C -0.049 4.049 26 N -0.544 5.544 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.131 0.869 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 23.622 1.392 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 C -0.249 4.249 4 C -0.015 4.015 5 C 0.040 3.960 6 O -0.370 6.370 7 C -0.254 4.254 8 C 0.174 3.826 9 N -0.346 5.346 10 C 0.064 3.936 11 C -0.217 4.217 12 C -0.071 4.071 13 C -0.215 4.215 14 C 0.107 3.893 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.257 4.257 25 C -0.067 4.067 26 N -0.263 5.263 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.149 0.851 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.873 21.876 1.018 23.629 hybrid contribution 0.884 0.508 1.013 1.437 sum -7.989 22.385 2.032 23.854 Atomic orbital electron populations 1.20711 0.89044 1.03254 1.03017 1.20861 0.96293 0.87366 0.91877 1.21399 0.93741 0.98847 1.10869 1.19647 0.93531 0.93694 0.94660 1.20958 0.97993 0.93001 0.84026 1.86580 1.78863 1.45622 1.25961 1.21228 1.00708 0.91272 1.12210 1.18367 0.87965 0.86603 0.89635 1.45007 1.06181 1.04538 1.78845 1.20040 0.78297 0.94488 1.00763 1.19108 1.13549 0.95259 0.93751 1.20524 0.96592 0.93404 0.96566 1.20213 1.10169 0.94753 0.96336 1.19442 0.91444 0.85128 0.93306 1.83978 1.71724 1.18613 1.33213 1.21411 1.43724 0.98714 0.83067 0.88856 1.25328 0.96156 0.95599 0.99420 1.70045 1.40806 1.11416 1.27024 0.85623 0.78523 0.79207 0.79943 1.19039 1.20048 1.20039 1.21153 1.10320 0.95684 0.98505 1.20627 0.95915 0.93813 0.96379 1.66992 1.07789 1.30096 1.21458 0.90439 0.90517 0.90797 0.85547 0.92411 0.92397 0.77192 0.85147 0.75711 0.92081 0.91987 0.86954 0.86338 0.91905 0.85393 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 36.01 0.37 -0.52 16 2 C 0.18 2.12 6.78 -82.60 -0.56 1.56 16 3 C -0.23 -2.48 9.44 -39.42 -0.37 -2.86 16 4 C -0.01 -0.08 5.54 -104.36 -0.58 -0.66 16 5 C 0.12 0.95 7.22 36.00 0.26 1.21 16 6 O -0.56 -4.97 13.64 -35.23 -0.48 -5.45 16 7 C -0.23 -2.88 9.03 -39.23 -0.35 -3.23 16 8 C 0.41 5.82 7.65 -155.02 -1.19 4.63 16 9 N -0.71 -9.89 5.72 -61.60 -0.35 -10.24 16 10 C 0.19 2.46 5.01 -5.19 -0.03 2.44 16 11 C -0.22 -3.45 5.25 -104.57 -0.55 -4.00 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -3.99 9.99 -39.39 -0.39 -4.39 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.17 -4.83 9.76 0.05 0.00 -4.83 16 16 C -0.39 -10.75 9.49 30.89 0.29 -10.46 16 17 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 20 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.24 -4.96 9.17 -39.40 -0.36 -5.33 16 25 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 26 N -0.54 -7.88 10.30 -8.67 -0.09 -7.96 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 32 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.38 1.34 9.12 45.56 0.42 1.75 16 34 H 0.13 1.47 6.71 -52.49 -0.35 1.12 16 35 H 0.41 5.91 8.59 -40.82 -0.35 5.56 16 36 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -32.53 362.33 -8.92 -41.45 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.61 Total: 10.06 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -4.59 Total: -19.59 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.32 Total: -42.21 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.48 Total: -10.27 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.53 -8.92 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853261301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.635 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds