Wall clock time and date at job start Tue Mar 31 2020 11:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38067 * 119.57681 * 2 1 4 4 C 1.38841 * 119.32882 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.74285 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.47079 * 270.02113 * 5 4 3 7 7 C 1.38337 * 118.50385 * 359.97438 * 4 3 2 8 8 C 1.39094 * 119.10236 * 0.02562 * 7 4 3 9 9 N 1.39004 * 119.70597 * 179.97438 * 8 7 4 10 10 C 1.46503 * 119.99773 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46929 * 180.02562 * 10 9 8 12 12 C 1.38295 * 119.93297 * 89.99901 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.25412 * 12 11 10 14 14 C 1.38882 * 119.93206 * 359.47410 * 13 12 11 15 15 O 1.35746 * 120.07145 * 180.25590 * 14 13 12 16 16 C 1.34834 * 117.00340 * 174.73672 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05417 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05311 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46962 * 120.00033 * 20 18 16 23 23 H 1.48499 * 109.47083 * 240.00124 * 20 18 16 24 24 C 1.38876 * 119.85943 * 0.52538 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72571 * 24 14 13 26 26 N 1.31948 * 119.57142 * 180.26810 * 2 1 3 27 27 H 1.09001 * 109.46707 * 89.99944 * 1 2 3 28 28 H 1.08998 * 109.47310 * 210.00560 * 1 2 3 29 29 H 1.09006 * 109.46963 * 330.00704 * 1 2 3 30 30 H 1.08005 * 120.33216 * 0.03923 * 3 2 1 31 31 H 1.09001 * 109.47785 * 30.02048 * 5 4 3 32 32 H 1.08998 * 109.47040 * 150.02722 * 5 4 3 33 33 H 0.96706 * 113.99886 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.44466 * 179.97438 * 7 4 3 35 35 H 0.96997 * 120.00372 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.47074 * 60.00602 * 10 9 8 37 37 H 1.09003 * 109.47105 * 299.99756 * 10 9 8 38 38 H 1.08000 * 119.96836 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03655 * 179.72759 * 13 12 11 40 40 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03796 * 179.70626 * 24 14 13 42 42 H 1.07997 * 119.96864 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5769 1.1948 -0.0005 5 6 4.3528 2.4866 -0.0011 6 8 4.5972 2.8949 -1.3487 7 6 4.2318 -0.0238 -0.0005 8 6 3.4815 -1.1950 -0.0005 9 7 4.1267 -2.4263 -0.0010 10 6 5.5905 -2.4863 -0.0022 11 6 6.0342 -3.9265 -0.0032 12 6 6.2364 -4.5854 -1.2021 13 6 6.6380 -5.9067 -1.2063 14 6 6.8493 -6.5706 -0.0049 15 8 7.2490 -7.8679 -0.0057 16 6 7.5409 -8.4193 1.1896 17 1 7.3742 -7.8591 2.0978 18 6 8.0550 -9.7055 1.2527 19 7 8.2584 -10.3876 0.1464 20 14 8.4600 -10.4691 2.9087 21 1 8.1427 -9.5025 3.9905 22 1 7.6541 -11.7024 3.0955 23 1 9.9046 -10.8097 2.9567 24 6 6.6453 -5.9061 1.1975 25 6 6.2387 -4.5864 1.1950 26 7 2.1582 -1.1476 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6470 2.1353 0.0006 31 1 3.7774 3.2564 0.5130 32 1 5.3032 2.3398 0.5119 33 1 5.0938 3.7211 -1.4254 34 1 5.3110 -0.0650 -0.0014 35 1 3.6077 -3.2458 -0.0014 36 1 5.9752 -1.9879 0.8876 37 1 5.9738 -1.9877 -0.8925 38 1 6.0759 -4.0675 -2.1361 39 1 6.7915 -6.4221 -2.1429 40 1 8.6177 -11.2876 0.1906 41 1 6.8041 -6.4210 2.1334 42 1 6.0795 -4.0692 2.1297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853261301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:47 Heat of formation + Delta-G solvation = -39.559098 kcal Electronic energy + Delta-G solvation = -24106.678422 eV Core-core repulsion = 20437.240337 eV Total energy + Delta-G solvation = -3669.438085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35621 -40.82584 -38.76660 -37.83341 -36.65762 -34.36240 -33.98238 -32.84691 -31.85464 -30.62909 -28.16539 -27.64129 -27.40751 -26.18792 -23.67900 -22.91440 -22.35598 -21.64576 -19.89876 -18.95266 -18.42977 -18.33370 -17.51851 -16.62468 -16.56283 -16.44425 -16.09977 -15.71480 -15.61314 -15.41438 -15.23552 -15.05596 -14.68110 -14.42733 -14.39166 -14.17640 -13.88737 -13.58090 -13.15812 -13.10583 -13.02387 -12.80005 -12.60019 -12.49575 -12.37228 -12.23588 -12.10016 -11.24539 -11.02897 -10.97582 -10.84393 -10.42578 -10.37965 -9.84318 -9.05318 -8.58730 -8.50535 -6.18988 0.29477 0.48939 0.51299 0.55033 1.34265 1.41810 1.52472 2.15264 2.25950 2.83787 2.86565 3.15087 3.45477 3.46951 3.63460 3.84067 4.00210 4.05136 4.08673 4.14290 4.29861 4.33696 4.43199 4.49169 4.53837 4.58166 4.64792 4.74532 4.77522 4.79970 4.83744 5.00858 5.09958 5.12009 5.23335 5.24091 5.46252 5.49373 5.66230 5.71438 5.72019 5.99238 6.09220 6.15597 6.63823 6.92201 6.94186 7.28558 7.73201 8.72585 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.002177 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.190723 B =12858.833069 C =13216.757908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.156 3.844 3 C -0.224 4.224 4 C -0.017 4.017 5 C 0.119 3.881 6 O -0.588 6.588 7 C -0.239 4.239 8 C 0.391 3.609 9 N -0.721 5.721 10 C 0.194 3.806 11 C -0.183 4.183 12 C -0.044 4.044 13 C -0.207 4.207 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.919 5.919 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.245 4.245 25 C -0.045 4.045 26 N -0.574 5.574 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.142 0.858 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 27.743 2.587 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 C -0.247 4.247 4 C -0.025 4.025 5 C 0.042 3.958 6 O -0.398 6.398 7 C -0.264 4.264 8 C 0.156 3.844 9 N -0.352 5.352 10 C 0.071 3.929 11 C -0.184 4.184 12 C -0.063 4.063 13 C -0.226 4.226 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.264 4.264 25 C -0.063 4.063 26 N -0.294 5.294 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.170 0.830 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.735 26.100 2.209 27.944 hybrid contribution 0.957 -0.302 0.524 1.132 sum -8.778 25.798 2.733 27.387 Atomic orbital electron populations 1.20789 0.87049 1.04182 1.03733 1.21448 0.97811 0.87298 0.91613 1.21761 0.94040 0.99480 1.09424 1.20140 0.94096 0.94803 0.93440 1.21020 0.98670 0.92036 0.84114 1.86509 1.79548 1.47331 1.26372 1.21423 1.01291 0.91267 1.12400 1.18554 0.88276 0.86903 0.90715 1.44832 1.06028 1.04481 1.79888 1.20045 0.78282 0.91978 1.02596 1.19512 1.09570 0.96591 0.92743 1.20887 0.94870 0.91926 0.98588 1.20450 1.10539 0.96197 0.95410 1.19989 0.92848 0.84650 0.95361 1.83947 1.74899 1.20971 1.33711 1.21878 1.44097 0.99413 0.83588 0.87933 1.26609 0.95818 0.95857 1.03751 1.70186 1.43567 1.12122 1.29801 0.84519 0.78432 0.78299 0.74896 1.17413 1.19393 1.19273 1.21249 1.10690 0.97144 0.97328 1.20956 0.94536 0.92377 0.98444 1.66983 1.08325 1.31591 1.22489 0.89719 0.91255 0.88218 0.83011 0.90133 0.91003 0.74674 0.84021 0.76446 0.90161 0.90395 0.83693 0.86786 0.91758 0.86203 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.17 71.24 0.72 -0.79 16 2 C 0.16 3.48 6.78 42.50 0.29 3.76 16 3 C -0.22 -4.27 9.44 22.37 0.21 -4.06 16 4 C -0.02 -0.33 5.54 -19.70 -0.11 -0.44 16 5 C 0.12 1.48 7.22 71.23 0.51 1.99 16 6 O -0.59 -8.35 13.64 -148.98 -2.03 -10.39 16 7 C -0.24 -5.33 9.03 22.50 0.20 -5.13 16 8 C 0.39 10.27 7.65 133.05 1.02 11.29 16 9 N -0.72 -18.21 5.72 -348.81 -2.00 -20.21 16 10 C 0.19 4.39 5.01 85.63 0.43 4.82 16 11 C -0.18 -5.37 5.25 -19.83 -0.10 -5.47 16 12 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 13 C -0.21 -8.61 9.99 22.39 0.22 -8.38 16 14 C 0.12 5.99 6.65 22.58 0.15 6.14 16 15 O -0.23 -13.68 9.76 -22.74 -0.22 -13.90 16 16 C -0.41 -23.88 9.49 67.92 0.64 -23.23 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 19 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16 20 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.24 -10.35 9.17 22.39 0.21 -10.15 16 25 C -0.04 -1.46 9.69 22.25 0.22 -1.25 16 26 N -0.57 -15.82 10.30 -181.34 -1.87 -17.69 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 0.95 8.08 -2.38 -0.02 0.93 16 30 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 32 H 0.07 0.68 8.10 -2.39 -0.02 0.67 16 33 H 0.40 1.48 9.12 -74.05 -0.68 0.80 16 34 H 0.14 2.69 6.71 -2.91 -0.02 2.67 16 35 H 0.40 10.97 8.59 -92.71 -0.80 10.17 16 36 H 0.08 1.58 7.87 -2.39 -0.02 1.56 16 37 H 0.08 1.59 7.87 -2.39 -0.02 1.57 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 41 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 42 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -76.10 362.33 1.10 -75.00 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.40 Total: 31.41 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 5.30 Total: -32.93 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.57 Total: -93.75 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -2.25 Total: -24.29 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -76.10 1.10 -75.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853261301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.438 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds