Wall clock time and date at job start Tue Mar 31 2020 11:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30181 * 126.80315 * 2 1 4 4 O 1.20914 * 111.60342 * 180.24849 * 3 2 1 5 5 C 1.34041 * 111.57203 * 359.75272 * 4 3 2 6 6 C 1.50695 * 126.78039 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44455 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.00782 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47008 * 90.00218 * 8 7 5 10 10 C 1.46498 * 120.00124 * 270.00165 * 9 8 7 11 11 C 1.34776 * 119.99947 * 90.00073 * 9 8 7 12 12 O 1.21610 * 119.99570 * 5.60800 * 11 9 8 13 13 C 1.47434 * 119.99906 * 185.60904 * 11 9 8 14 14 C 1.39222 * 120.28347 * 312.65089 * 13 11 9 15 15 C 1.38224 * 120.08964 * 180.28201 * 14 13 11 16 16 C 1.38827 * 120.67787 * 359.71808 * 15 14 13 17 17 C 1.37603 * 120.56963 * 359.97438 * 16 15 14 18 18 C 1.40711 * 119.88217 * 0.02562 * 17 16 15 19 19 C 1.40887 * 120.33047 * 180.02562 * 18 17 16 20 20 H 1.07992 * 119.99997 * 149.56942 * 19 18 17 21 21 C 1.40269 * 119.99776 * 329.57014 * 19 18 17 22 22 N 1.30632 * 120.00001 * 335.36872 * 21 19 18 23 23 Si 1.86796 * 120.00243 * 155.36882 * 21 19 18 24 24 H 1.48501 * 109.47343 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46908 * 299.99976 * 23 21 19 26 26 H 1.48501 * 109.46845 * 59.99840 * 23 21 19 27 27 H 1.08997 * 109.47073 * 270.16231 * 1 2 3 28 28 H 1.09001 * 109.47171 * 30.16639 * 1 2 3 29 29 H 1.08999 * 109.46932 * 150.16352 * 1 2 3 30 30 H 1.09006 * 109.46956 * 269.99841 * 6 5 4 31 31 H 1.09006 * 109.47155 * 29.99211 * 6 5 4 32 32 H 1.08998 * 109.47774 * 149.99561 * 6 5 4 33 33 H 1.09003 * 109.46859 * 330.00333 * 8 7 5 34 34 H 1.08998 * 109.47228 * 209.99986 * 8 7 5 35 35 H 1.09002 * 109.47107 * 265.36449 * 10 9 8 36 36 H 1.09003 * 109.46948 * 25.36049 * 10 9 8 37 37 H 1.09001 * 109.47338 * 145.36403 * 10 9 8 38 38 H 1.07995 * 119.95543 * 0.02562 * 14 13 11 39 39 H 1.07996 * 119.65875 * 179.74053 * 15 14 13 40 40 H 1.07997 * 119.71597 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.05814 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00147 * 353.98657 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1321 0.0037 8 6 1.9591 -2.5864 0.0075 9 7 1.8383 -3.0560 1.3900 10 6 3.0023 -3.6232 2.0753 11 6 0.6564 -2.9661 2.0313 12 8 -0.3334 -2.5910 1.4324 13 6 0.5633 -3.3226 3.4589 14 6 1.1309 -4.5051 3.9257 15 6 1.0362 -4.8382 5.2638 16 6 0.3829 -4.0007 6.1577 17 6 -0.1824 -2.8223 5.7274 18 6 -0.1002 -2.4599 4.3702 19 6 -0.6752 -1.2553 3.9194 20 1 -0.2410 -0.7300 3.0816 21 6 -1.8116 -0.7382 4.5588 22 7 -2.6134 -1.5362 5.2119 23 14 -2.1783 1.0916 4.4765 24 1 -3.4268 1.3805 5.2267 25 1 -1.0520 1.8497 5.0781 26 1 -2.3478 1.4990 3.0585 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5113 30 1 5.2112 -1.5550 -1.0365 31 1 5.6682 -0.7850 0.5019 32 1 4.7673 -2.3202 0.5082 33 1 2.7202 -3.1708 -0.5096 34 1 1.0024 -2.7045 -0.5012 35 1 2.9902 -4.7084 1.9743 36 1 3.9149 -3.2270 1.6298 37 1 2.9679 -3.3561 3.1315 38 1 1.6421 -5.1650 3.2405 39 1 1.4754 -5.7592 5.6176 40 1 0.3185 -4.2760 7.2000 41 1 -0.6884 -2.1768 6.4300 42 1 -2.4728 -2.4956 5.1825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864830617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:21 Heat of formation + Delta-G solvation = 39.638581 kcal Electronic energy + Delta-G solvation = -26982.279361 eV Core-core repulsion = 23316.275544 eV Total energy + Delta-G solvation = -3666.003816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.69241 -39.40120 -37.24520 -35.57526 -34.38121 -33.84764 -33.19354 -30.37043 -29.55121 -28.60389 -28.28966 -26.67921 -26.03570 -25.00521 -22.41081 -21.25085 -20.97114 -20.01525 -18.84126 -17.75510 -17.47338 -16.83123 -16.29782 -15.69497 -15.14594 -14.93267 -14.36162 -14.15412 -14.02308 -13.74528 -13.40960 -13.31234 -12.87774 -12.66265 -12.54712 -12.48285 -12.46464 -12.21402 -12.03498 -11.98703 -11.73138 -11.56509 -11.27891 -10.97598 -10.77758 -10.66741 -10.42024 -10.11085 -9.69766 -9.53631 -9.15893 -9.06693 -8.67772 -8.22965 -7.77603 -7.69373 -7.26396 -4.52797 1.59767 2.33777 2.40617 2.70833 3.15388 3.24507 3.25753 3.34428 3.65905 3.84286 3.97978 4.46672 4.50459 4.60698 4.83449 5.07410 5.16037 5.26391 5.35694 5.43154 5.53042 5.58765 5.66312 5.72779 5.81955 5.96584 5.99733 6.00951 6.09708 6.15536 6.18252 6.21436 6.41658 6.62432 6.73949 6.95590 6.99143 7.24275 7.48004 7.56745 7.68291 7.79270 7.94280 8.13176 8.14863 8.52601 8.62865 8.74800 9.11687 9.96608 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.006335 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.554919 B = 4418.678409 C = 6060.535732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.048 3.952 3 N -0.375 5.375 4 O 0.091 5.909 5 C -0.033 4.033 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.196 3.804 9 N -0.624 5.624 10 C 0.082 3.918 11 C 0.583 3.417 12 O -0.529 6.529 13 C -0.259 4.259 14 C -0.048 4.048 15 C -0.262 4.262 16 C -0.073 4.073 17 C -0.209 4.209 18 C 0.128 3.872 19 C -0.482 4.482 20 H 0.079 0.921 21 C 0.042 3.958 22 N -0.783 5.783 23 Si 1.058 2.942 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.272 1.272 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 -1.948 -7.949 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 N -0.082 5.082 4 O 0.028 5.972 5 C -0.098 4.098 6 C -0.132 4.132 7 C -0.216 4.216 8 C 0.072 3.928 9 N -0.359 5.359 10 C -0.061 4.061 11 C 0.376 3.624 12 O -0.405 6.405 13 C -0.264 4.264 14 C -0.067 4.067 15 C -0.282 4.282 16 C -0.092 4.092 17 C -0.228 4.228 18 C 0.124 3.876 19 C -0.509 4.509 20 H 0.097 0.903 21 C -0.182 4.182 22 N -0.405 5.405 23 Si 0.881 3.119 24 H -0.196 1.196 25 H -0.199 1.199 26 H -0.197 1.197 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.821 0.699 -7.697 12.498 hybrid contribution 1.147 -2.079 -0.366 2.402 sum 10.968 -1.380 -8.063 13.683 Atomic orbital electron populations 1.20238 0.85324 1.02767 1.04810 1.23564 0.99269 0.88060 1.00260 1.73816 0.89134 1.23948 1.21338 1.84765 1.21961 1.22305 1.68190 1.24186 0.97945 0.84204 1.03431 1.20411 0.90287 0.98759 1.03739 1.21471 0.91641 0.98561 1.09952 1.19392 1.02560 0.86425 0.84430 1.47948 1.11038 1.63959 1.12987 1.21942 0.87455 0.97429 0.99300 1.18504 0.81442 0.75448 0.86989 1.90663 1.35625 1.46484 1.67754 1.19339 1.16502 0.99301 0.91236 1.20790 0.95996 0.94986 0.94901 1.20217 1.12128 1.01998 0.93826 1.20724 0.96513 0.94504 0.97436 1.21155 1.07616 0.98660 0.95386 1.17370 0.89119 0.90818 0.90279 1.20576 1.10895 1.05017 1.14436 0.90332 1.27045 0.92508 1.07617 0.90985 1.70370 1.32435 1.08521 1.29146 0.83741 0.77515 0.72551 0.78116 1.19584 1.19895 1.19712 0.88982 0.91616 0.89633 0.89629 0.89887 0.89117 0.90092 0.88721 0.93156 0.92302 0.90132 0.88624 0.88967 0.88998 0.87617 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.37 36.01 0.34 -0.99 16 2 C 0.05 0.86 7.33 -82.10 -0.60 0.26 16 3 N -0.37 -6.85 12.07 33.42 0.40 -6.45 16 4 O 0.09 1.46 11.20 17.18 0.19 1.65 16 5 C -0.03 -0.45 7.49 -35.30 -0.26 -0.71 16 6 C -0.07 -0.63 10.25 36.00 0.37 -0.26 16 7 C -0.21 -3.32 5.90 -104.42 -0.62 -3.93 16 8 C 0.20 2.86 5.68 -5.19 -0.03 2.83 16 9 N -0.62 -10.63 2.86 -184.23 -0.53 -11.16 16 10 C 0.08 1.11 9.03 59.85 0.54 1.66 16 11 C 0.58 12.82 6.58 -12.52 -0.08 12.74 16 12 O -0.53 -12.95 13.64 5.27 0.07 -12.88 16 13 C -0.26 -6.07 5.02 -104.36 -0.52 -6.60 16 14 C -0.05 -0.99 7.69 -39.22 -0.30 -1.29 16 15 C -0.26 -5.37 10.03 -39.37 -0.39 -5.76 16 16 C -0.07 -1.59 10.01 -39.60 -0.40 -1.99 16 17 C -0.21 -5.13 8.01 -38.88 -0.31 -5.44 16 18 C 0.13 3.31 5.20 -106.54 -0.55 2.76 16 19 C -0.48 -12.86 7.73 -37.82 -0.29 -13.15 16 20 H 0.08 2.16 6.35 -52.49 -0.33 1.83 16 21 C 0.04 1.08 4.92 -17.30 -0.09 0.99 16 22 N -0.78 -20.74 12.47 55.56 0.69 -20.05 16 23 Si 1.06 22.36 30.00 -169.99 -5.10 17.26 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H 0.09 1.93 7.10 -51.93 -0.37 1.57 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.48 7.28 -51.93 -0.38 1.11 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.69 5.32 -51.93 -0.28 0.41 16 33 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 34 H 0.09 1.49 6.86 -51.93 -0.36 1.14 16 35 H 0.05 0.60 7.07 -51.93 -0.37 0.23 16 36 H 0.06 0.61 5.31 -51.93 -0.28 0.34 16 37 H 0.08 1.28 6.11 -51.93 -0.32 0.96 16 38 H 0.10 1.68 6.11 -52.49 -0.32 1.36 16 39 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.11 2.67 6.85 -52.49 -0.36 2.31 16 42 H 0.30 8.19 6.87 -40.82 -0.28 7.91 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -30.58 343.57 -7.25 -37.83 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.96 Total: 7.51 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.21 Total: -18.89 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.57 Total: -37.65 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.26 Total: -11.23 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.10 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.58 -7.25 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864830617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.474 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds