Wall clock time and date at job start Tue Mar 31 2020 11:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30181 * 126.80315 * 2 1 4 4 O 1.20914 * 111.60342 * 180.24849 * 3 2 1 5 5 C 1.34041 * 111.57203 * 359.75272 * 4 3 2 6 6 C 1.50695 * 126.78039 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44455 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.00782 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47008 * 90.00218 * 8 7 5 10 10 C 1.46498 * 120.00124 * 270.00165 * 9 8 7 11 11 C 1.34776 * 119.99947 * 90.00073 * 9 8 7 12 12 O 1.21610 * 119.99570 * 5.60800 * 11 9 8 13 13 C 1.47434 * 119.99906 * 185.60904 * 11 9 8 14 14 C 1.39222 * 120.28347 * 312.65089 * 13 11 9 15 15 C 1.38224 * 120.08964 * 180.28201 * 14 13 11 16 16 C 1.38827 * 120.67787 * 359.71808 * 15 14 13 17 17 C 1.37603 * 120.56963 * 359.97438 * 16 15 14 18 18 C 1.40711 * 119.88217 * 0.02562 * 17 16 15 19 19 C 1.40887 * 120.33047 * 180.02562 * 18 17 16 20 20 H 1.07992 * 119.99997 * 149.56942 * 19 18 17 21 21 C 1.40269 * 119.99776 * 329.57014 * 19 18 17 22 22 N 1.30632 * 120.00001 * 335.36872 * 21 19 18 23 23 Si 1.86796 * 120.00243 * 155.36882 * 21 19 18 24 24 H 1.48501 * 109.47343 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46908 * 299.99976 * 23 21 19 26 26 H 1.48501 * 109.46845 * 59.99840 * 23 21 19 27 27 H 1.08997 * 109.47073 * 270.16231 * 1 2 3 28 28 H 1.09001 * 109.47171 * 30.16639 * 1 2 3 29 29 H 1.08999 * 109.46932 * 150.16352 * 1 2 3 30 30 H 1.09006 * 109.46956 * 269.99841 * 6 5 4 31 31 H 1.09006 * 109.47155 * 29.99211 * 6 5 4 32 32 H 1.08998 * 109.47774 * 149.99561 * 6 5 4 33 33 H 1.09003 * 109.46859 * 330.00333 * 8 7 5 34 34 H 1.08998 * 109.47228 * 209.99986 * 8 7 5 35 35 H 1.09002 * 109.47107 * 265.36449 * 10 9 8 36 36 H 1.09003 * 109.46948 * 25.36049 * 10 9 8 37 37 H 1.09001 * 109.47338 * 145.36403 * 10 9 8 38 38 H 1.07995 * 119.95543 * 0.02562 * 14 13 11 39 39 H 1.07996 * 119.65875 * 179.74053 * 15 14 13 40 40 H 1.07997 * 119.71597 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.05814 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00147 * 353.98657 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1321 0.0037 8 6 1.9591 -2.5864 0.0075 9 7 1.8383 -3.0560 1.3900 10 6 3.0023 -3.6232 2.0753 11 6 0.6564 -2.9661 2.0313 12 8 -0.3334 -2.5910 1.4324 13 6 0.5633 -3.3226 3.4589 14 6 1.1309 -4.5051 3.9257 15 6 1.0362 -4.8382 5.2638 16 6 0.3829 -4.0007 6.1577 17 6 -0.1824 -2.8223 5.7274 18 6 -0.1002 -2.4599 4.3702 19 6 -0.6752 -1.2553 3.9194 20 1 -0.2410 -0.7300 3.0816 21 6 -1.8116 -0.7382 4.5588 22 7 -2.6134 -1.5362 5.2119 23 14 -2.1783 1.0916 4.4765 24 1 -3.4268 1.3805 5.2267 25 1 -1.0520 1.8497 5.0781 26 1 -2.3478 1.4990 3.0585 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5113 30 1 5.2112 -1.5550 -1.0365 31 1 5.6682 -0.7850 0.5019 32 1 4.7673 -2.3202 0.5082 33 1 2.7202 -3.1708 -0.5096 34 1 1.0024 -2.7045 -0.5012 35 1 2.9902 -4.7084 1.9743 36 1 3.9149 -3.2270 1.6298 37 1 2.9679 -3.3561 3.1315 38 1 1.6421 -5.1650 3.2405 39 1 1.4754 -5.7592 5.6176 40 1 0.3185 -4.2760 7.2000 41 1 -0.6884 -2.1768 6.4300 42 1 -2.4728 -2.4956 5.1825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864830617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:19 Heat of formation + Delta-G solvation = 22.034141 kcal Electronic energy + Delta-G solvation = -26983.042746 eV Core-core repulsion = 23316.275544 eV Total energy + Delta-G solvation = -3666.767202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -45.97409 -40.99849 -38.94071 -37.02510 -35.98003 -35.42817 -34.34750 -32.00685 -31.32878 -29.83119 -29.61703 -27.77126 -27.53170 -26.69503 -23.97312 -22.92899 -22.51378 -21.25322 -20.43266 -19.51411 -18.76804 -18.10759 -17.82199 -17.17798 -16.64037 -16.59603 -15.90784 -15.68118 -15.44027 -15.00197 -14.67108 -14.51585 -14.37077 -14.14654 -13.98209 -13.95760 -13.86970 -13.56125 -13.55249 -13.21640 -13.05649 -12.86974 -12.78210 -12.64944 -12.49868 -12.08283 -11.88250 -11.86163 -11.43430 -10.99017 -10.92574 -10.56396 -10.09930 -9.63979 -9.56083 -9.49883 -9.18420 -6.48291 0.46688 0.56420 0.90793 1.06632 1.38023 1.52545 1.65905 2.05499 2.21813 2.24708 2.41289 2.64995 3.18466 3.50820 3.52716 3.72612 4.03381 4.10833 4.18045 4.30117 4.40808 4.42555 4.44195 4.54604 4.60869 4.70876 4.72422 4.75562 4.78215 4.83365 4.85692 4.93959 5.05672 5.14011 5.18179 5.31064 5.39893 5.60962 5.72905 5.75718 5.82544 5.94834 6.14998 6.33993 6.52729 6.77001 6.85232 7.30405 7.50523 7.98212 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.006335 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.554919 B = 4418.678409 C = 6060.535732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.018 3.982 3 N -0.402 5.402 4 O 0.090 5.910 5 C -0.009 4.009 6 C -0.075 4.075 7 C -0.233 4.233 8 C 0.197 3.803 9 N -0.615 5.615 10 C 0.073 3.927 11 C 0.574 3.426 12 O -0.568 6.568 13 C -0.270 4.270 14 C -0.044 4.044 15 C -0.244 4.244 16 C -0.074 4.074 17 C -0.233 4.233 18 C 0.102 3.898 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.010 3.990 22 N -0.808 5.808 23 Si 1.098 2.902 24 H -0.260 1.260 25 H -0.264 1.264 26 H -0.269 1.269 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.537 -4.288 -8.713 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 N -0.110 5.110 4 O 0.027 5.973 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.239 4.239 8 C 0.075 3.925 9 N -0.349 5.349 10 C -0.068 4.068 11 C 0.366 3.634 12 O -0.447 6.447 13 C -0.274 4.274 14 C -0.063 4.063 15 C -0.263 4.263 16 C -0.092 4.092 17 C -0.253 4.253 18 C 0.098 3.902 19 C -0.548 4.548 20 H 0.072 0.928 21 C -0.207 4.207 22 N -0.431 5.431 23 Si 0.916 3.084 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.194 1.194 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.728 -1.661 -8.463 16.212 hybrid contribution 0.222 -1.575 -0.176 1.600 sum 13.950 -3.235 -8.638 16.724 Atomic orbital electron populations 1.20018 0.86381 1.03295 1.02329 1.23730 0.99224 0.89575 1.01463 1.73794 0.90000 1.24668 1.22554 1.84719 1.20925 1.23912 1.67785 1.25115 0.99385 0.83054 0.99862 1.20764 0.87540 0.98566 1.06275 1.21609 0.92073 0.98484 1.11714 1.19617 1.03386 0.86504 0.83016 1.47888 1.10359 1.62717 1.13888 1.22223 0.87407 0.99219 0.97983 1.18476 0.82666 0.75525 0.86746 1.90641 1.37588 1.48106 1.68404 1.19758 1.15616 0.99913 0.92119 1.21194 0.95138 0.94064 0.95873 1.20768 1.09644 1.02492 0.93423 1.21099 0.95377 0.93402 0.99367 1.21108 1.09217 1.00158 0.94777 1.17728 0.89728 0.91314 0.91424 1.20477 1.12455 1.06743 1.15133 0.92766 1.28109 0.91953 1.10470 0.90203 1.70479 1.33253 1.07491 1.31876 0.83261 0.78014 0.68815 0.78346 1.18395 1.18871 1.19438 0.92921 0.90442 0.89715 0.86382 0.88215 0.87537 0.84843 0.90654 0.90315 0.88326 0.92465 0.84666 0.84752 0.86203 0.89677 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.44 9.37 71.24 0.67 -1.77 16 2 C 0.02 0.68 7.33 43.58 0.32 0.99 16 3 N -0.40 -14.91 12.07 -49.56 -0.60 -15.50 16 4 O 0.09 2.77 11.20 71.63 0.80 3.57 16 5 C -0.01 -0.23 7.49 25.04 0.19 -0.04 16 6 C -0.07 -0.83 10.25 71.23 0.73 -0.10 16 7 C -0.23 -7.02 5.90 -19.73 -0.12 -7.14 16 8 C 0.20 5.31 5.68 85.63 0.49 5.79 16 9 N -0.62 -19.67 2.86 -855.02 -2.44 -22.11 16 10 C 0.07 1.66 9.03 127.77 1.15 2.82 16 11 C 0.57 25.46 6.58 86.67 0.57 26.03 16 12 O -0.57 -29.21 13.64 -4.06 -0.06 -29.27 16 13 C -0.27 -12.65 5.02 -19.70 -0.10 -12.75 16 14 C -0.04 -1.69 7.69 22.50 0.17 -1.52 16 15 C -0.24 -9.07 10.03 22.41 0.22 -8.85 16 16 C -0.07 -3.11 10.01 22.26 0.22 -2.89 16 17 C -0.23 -11.80 8.01 22.72 0.18 -11.62 16 18 C 0.10 5.48 5.20 -21.11 -0.11 5.37 16 19 C -0.52 -29.77 7.73 23.41 0.18 -29.59 16 20 H 0.05 3.27 6.35 -2.91 -0.02 3.25 16 21 C 0.01 0.55 4.92 85.37 0.42 0.97 16 22 N -0.81 -45.67 12.47 21.88 0.27 -45.40 16 23 Si 1.10 48.06 30.00 68.60 2.06 50.12 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H 0.05 2.45 7.10 -2.39 -0.02 2.44 16 28 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.08 3.19 7.28 -2.39 -0.02 3.18 16 30 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 0.89 5.32 -2.39 -0.01 0.88 16 33 H 0.13 2.17 8.01 -2.39 -0.02 2.15 16 34 H 0.08 2.35 6.86 -2.39 -0.02 2.33 16 35 H 0.08 1.39 7.07 -2.39 -0.02 1.38 16 36 H 0.10 1.45 5.31 -2.39 -0.01 1.44 16 37 H 0.06 1.61 6.11 -2.39 -0.01 1.60 16 38 H 0.14 4.05 6.11 -2.91 -0.02 4.04 16 39 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 41 H 0.08 4.57 6.85 -2.91 -0.02 4.55 16 42 H 0.28 16.59 6.87 -92.71 -0.64 15.96 16 Total: -1.00 -74.88 343.57 6.42 -68.45 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.20 Total: 24.44 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 5.19 Total: -34.29 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.77 Total: -83.01 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.75 Total: -25.70 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.06 Total: 50.12 kcal Total: -74.88 6.42 -68.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864830617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.485 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds