Wall clock time and date at job start Tue Mar 31 2020 11:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33669 * 125.81100 * 2 1 4 4 C 1.34217 * 110.91431 * 180.30590 * 3 2 1 5 5 C 1.50697 * 125.42943 * 179.68861 * 4 3 2 6 6 C 1.53004 * 109.46766 * 300.04096 * 5 4 3 7 7 C 1.53006 * 109.47212 * 60.03508 * 5 4 3 8 8 C 1.34171 * 109.15214 * 359.71787 * 4 3 2 9 9 C 1.36527 * 125.81607 * 179.82474 * 2 1 3 10 10 C 1.47249 * 127.19947 * 359.97438 * 9 2 1 11 11 O 1.21626 * 120.00229 * 38.18579 * 10 9 2 12 12 N 1.34776 * 120.00105 * 218.19314 * 10 9 2 13 13 C 1.37076 * 120.00041 * 185.50305 * 12 10 9 14 14 H 1.08009 * 119.99378 * 229.34096 * 13 12 10 15 15 C 1.38915 * 120.00649 * 49.33463 * 13 12 10 16 16 N 1.31418 * 119.99884 * 44.04301 * 15 13 12 17 17 Si 1.86796 * 120.00510 * 224.04339 * 15 13 12 18 18 H 1.48499 * 109.46986 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47388 * 119.99936 * 17 15 13 20 20 H 1.48496 * 109.47232 * 239.99973 * 17 15 13 21 21 C 1.39335 * 119.99696 * 5.49067 * 12 10 9 22 22 C 1.39088 * 119.70010 * 39.45134 * 21 12 10 23 23 C 1.38368 * 119.09864 * 179.71894 * 22 21 12 24 24 C 1.38836 * 118.49116 * 0.49828 * 23 22 21 25 25 C 1.38142 * 119.32047 * 359.49863 * 24 23 22 26 26 N 1.31881 * 120.84901 * 0.25806 * 25 24 23 27 27 H 1.08993 * 109.47453 * 270.16694 * 1 2 3 28 28 H 1.08997 * 109.47193 * 30.16885 * 1 2 3 29 29 H 1.09003 * 109.46894 * 150.16968 * 1 2 3 30 30 H 1.08993 * 109.47708 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47179 * 59.99738 * 6 5 4 32 32 H 1.09004 * 109.46908 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47183 * 299.99482 * 6 5 4 34 34 H 1.08993 * 109.47168 * 180.02562 * 7 5 4 35 35 H 1.09006 * 109.47040 * 300.00973 * 7 5 4 36 36 H 1.09001 * 109.46577 * 60.00265 * 7 5 4 37 37 H 1.08003 * 127.02153 * 180.02562 * 8 4 3 38 38 H 0.96998 * 120.00196 * 184.54326 * 16 15 13 39 39 H 1.07998 * 120.45033 * 359.94954 * 22 21 12 40 40 H 1.07997 * 120.75401 * 180.24797 * 23 22 21 41 41 H 1.08006 * 120.34031 * 179.77919 * 24 23 22 42 42 H 1.07997 * 119.57919 * 180.22807 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2891 1.0840 0.0000 4 6 3.5861 0.7390 -0.0067 5 6 4.7460 1.7010 -0.0154 6 6 4.6703 2.5798 -1.2656 7 6 4.6857 2.5839 1.2328 8 6 3.6857 -0.5990 -0.0051 9 6 2.3059 -1.1071 0.0034 10 6 1.8758 -2.5153 0.0082 11 8 0.9061 -2.8573 -0.6415 12 7 2.5565 -3.4254 0.7327 13 6 2.2268 -4.7533 0.6494 14 1 2.0767 -5.3299 1.5503 15 6 2.0856 -5.3575 -0.5935 16 7 2.9657 -5.1245 -1.5411 17 14 0.6446 -6.5010 -0.9179 18 1 -0.1968 -6.5953 0.3020 19 1 -0.1688 -5.9665 -2.0395 20 1 1.1535 -7.8497 -1.2744 21 6 3.5955 -3.0164 1.5661 22 6 3.4691 -1.8412 2.2991 23 6 4.5062 -1.4498 3.1273 24 6 5.6428 -2.2449 3.1862 25 6 5.7005 -3.3997 2.4303 26 7 4.6941 -3.7504 1.6534 27 1 -0.3634 0.0030 1.0276 28 1 -0.3633 0.8884 -0.5164 29 1 -0.3633 -0.8915 -0.5112 30 1 5.6817 1.1422 -0.0200 31 1 3.7345 3.1387 -1.2607 32 1 5.5090 3.2760 -1.2717 33 1 4.7132 1.9509 -2.1549 34 1 5.5244 3.2800 1.2263 35 1 3.7499 3.1428 1.2377 36 1 4.7396 1.9578 2.1235 37 1 4.5939 -1.1836 -0.0088 38 1 2.8322 -5.4930 -2.4284 39 1 2.5721 -1.2442 2.2258 40 1 4.4347 -0.5443 3.7115 41 1 6.4716 -1.9657 3.8200 42 1 6.5811 -4.0232 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:44 Heat of formation + Delta-G solvation = 29.262810 kcal Electronic energy + Delta-G solvation = -27140.405513 eV Core-core repulsion = 23473.951770 eV Total energy + Delta-G solvation = -3666.453743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.24416 -39.77393 -38.02200 -35.60406 -34.55961 -32.97155 -31.99015 -31.54431 -30.89742 -29.10690 -27.23537 -26.73887 -25.13118 -23.21264 -22.56602 -21.86222 -21.61772 -20.54509 -18.55946 -17.58638 -16.70482 -16.07589 -15.79203 -15.62899 -15.27658 -14.80408 -14.62854 -14.34884 -14.10044 -13.78950 -13.53481 -13.26821 -13.08306 -12.84281 -12.61934 -12.49940 -12.45068 -12.37211 -12.24344 -11.81043 -11.68459 -11.44276 -11.27749 -11.19303 -11.06135 -10.81463 -10.71221 -10.26783 -9.45160 -9.31684 -8.94533 -8.75393 -8.49156 -8.34570 -7.95442 -7.28729 -6.43711 -4.02019 1.74803 1.86962 2.15710 2.63370 3.09831 3.29589 3.43014 3.46892 3.99831 4.12037 4.50803 4.63295 4.69394 4.84795 4.97691 5.05768 5.15972 5.26831 5.35872 5.39925 5.45645 5.52813 5.62104 5.67496 5.72955 5.73465 5.75599 5.82586 5.84956 5.99131 6.05724 6.14827 6.15703 6.17592 6.34026 6.38181 6.56197 6.68405 6.78833 6.82237 7.28962 7.52093 7.53176 8.07698 8.44938 8.79209 9.03891 9.36111 9.81256 10.55653 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.005977 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.894118 B = 4683.412906 C = 5912.965673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.034 3.966 3 O -0.177 6.177 4 C -0.020 4.020 5 C -0.008 4.008 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.207 4.207 10 C 0.566 3.434 11 O -0.526 6.526 12 N -0.370 5.370 13 C -0.366 4.366 14 H 0.090 0.910 15 C 0.102 3.898 16 N -0.798 5.798 17 Si 0.899 3.101 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.287 1.287 21 C 0.362 3.638 22 C -0.200 4.200 23 C -0.062 4.062 24 C -0.233 4.233 25 C 0.118 3.882 26 N -0.480 5.480 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.145 0.855 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 14.312 5.429 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.018 4.018 3 O -0.075 6.075 4 C -0.068 4.068 5 C -0.027 4.027 6 C -0.205 4.205 7 C -0.203 4.203 8 C -0.177 4.177 9 C -0.211 4.211 10 C 0.356 3.644 11 O -0.404 6.404 12 N -0.082 5.082 13 C -0.490 4.490 14 H 0.107 0.893 15 C -0.114 4.114 16 N -0.427 5.427 17 Si 0.723 3.277 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.214 1.214 21 C 0.134 3.866 22 C -0.223 4.223 23 C -0.088 4.088 24 C -0.255 4.255 25 C -0.042 4.042 26 N -0.194 5.194 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.365 13.549 4.327 14.616 hybrid contribution -0.234 -0.047 0.196 0.309 sum 3.131 13.502 4.523 14.580 Atomic orbital electron populations 1.20464 0.84444 1.04872 1.03535 1.22470 0.93514 0.82956 1.02817 1.83573 1.16239 1.34867 1.72791 1.21898 0.82567 0.94071 1.08250 1.19684 0.92432 0.94062 0.96494 1.21866 1.02195 0.99439 0.97008 1.21848 1.02165 0.99351 0.96965 1.22541 0.96787 0.93011 1.05405 1.21440 0.93105 0.94804 1.11797 1.17245 0.82675 0.82605 0.81849 1.90606 1.27052 1.80130 1.42643 1.41099 1.22870 1.07327 1.36902 1.18830 1.52122 0.84514 0.93542 0.89264 1.25254 0.94566 0.95573 0.96028 1.70380 1.27991 1.40309 1.03985 0.86427 0.83413 0.78548 0.79265 1.18846 1.20071 1.21379 1.19264 0.86965 0.88396 0.91997 1.21754 1.01302 0.99165 1.00122 1.21112 0.92957 0.98406 0.96309 1.21746 0.99698 0.98525 1.05514 1.22493 0.96223 0.93992 0.91468 1.67464 0.99258 1.33711 1.18991 0.90258 0.90834 0.87546 0.88535 0.92192 0.91998 0.92202 0.92044 0.92235 0.92124 0.83765 0.92130 0.85946 0.86234 0.86228 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.23 36.00 0.37 -0.79 16 2 C 0.03 0.62 7.36 -34.93 -0.26 0.36 16 3 O -0.18 -2.93 10.52 7.61 0.08 -2.85 16 4 C -0.02 -0.31 5.79 -35.74 -0.21 -0.52 16 5 C -0.01 -0.10 3.32 -91.77 -0.30 -0.40 16 6 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16 7 C -0.15 -1.45 9.18 37.16 0.34 -1.11 16 8 C -0.16 -3.01 7.78 -37.45 -0.29 -3.31 16 9 C -0.21 -4.41 3.73 -103.29 -0.38 -4.79 16 10 C 0.57 14.55 6.98 -12.60 -0.09 14.47 16 11 O -0.53 -14.70 14.61 5.25 0.08 -14.62 16 12 N -0.37 -9.81 2.74 -61.90 -0.17 -9.98 16 13 C -0.37 -10.46 8.49 -14.96 -0.13 -10.59 16 14 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 15 C 0.10 2.90 3.87 -17.48 -0.07 2.83 16 16 N -0.80 -23.48 13.90 55.49 0.77 -22.71 16 17 Si 0.90 22.14 29.69 -169.99 -5.05 17.10 16 18 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.36 8.47 5.45 -154.70 -0.84 7.63 16 22 C -0.20 -3.87 6.42 -39.22 -0.25 -4.12 16 23 C -0.06 -0.98 10.17 -39.31 -0.40 -1.38 16 24 C -0.23 -3.55 10.11 -39.40 -0.40 -3.95 16 25 C 0.12 2.14 11.18 -17.57 -0.20 1.94 16 26 N -0.48 -11.16 9.95 -12.35 -0.12 -11.28 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.84 6.65 -51.93 -0.35 1.50 16 30 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.14 2.93 7.46 -52.48 -0.39 2.54 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.37 6.29 -52.49 -0.33 2.04 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -33.46 356.12 -7.51 -40.97 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.70 Total: 2.94 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.77 Total: -4.94 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.48 Total: -43.96 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.16 Total: -17.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.05 Total: 17.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.46 -7.51 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.229 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds