Wall clock time and date at job start Tue Mar 31 2020 11:15:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 O 1.33669 * 125.81100 * 2 1
4 4 C 1.34217 * 110.91431 * 180.30590 * 3 2 1
5 5 C 1.50697 * 125.42943 * 179.68861 * 4 3 2
6 6 C 1.53004 * 109.46766 * 300.04096 * 5 4 3
7 7 C 1.53006 * 109.47212 * 60.03508 * 5 4 3
8 8 C 1.34171 * 109.15214 * 359.71787 * 4 3 2
9 9 C 1.36527 * 125.81607 * 179.82474 * 2 1 3
10 10 C 1.47249 * 127.19947 * 359.97438 * 9 2 1
11 11 O 1.21626 * 120.00229 * 38.18579 * 10 9 2
12 12 N 1.34776 * 120.00105 * 218.19314 * 10 9 2
13 13 C 1.37076 * 120.00041 * 185.50305 * 12 10 9
14 14 H 1.08009 * 119.99378 * 229.34096 * 13 12 10
15 15 C 1.38915 * 120.00649 * 49.33463 * 13 12 10
16 16 N 1.31418 * 119.99884 * 44.04301 * 15 13 12
17 17 Si 1.86796 * 120.00510 * 224.04339 * 15 13 12
18 18 H 1.48499 * 109.46986 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.47388 * 119.99936 * 17 15 13
20 20 H 1.48496 * 109.47232 * 239.99973 * 17 15 13
21 21 C 1.39335 * 119.99696 * 5.49067 * 12 10 9
22 22 C 1.39088 * 119.70010 * 39.45134 * 21 12 10
23 23 C 1.38368 * 119.09864 * 179.71894 * 22 21 12
24 24 C 1.38836 * 118.49116 * 0.49828 * 23 22 21
25 25 C 1.38142 * 119.32047 * 359.49863 * 24 23 22
26 26 N 1.31881 * 120.84901 * 0.25806 * 25 24 23
27 27 H 1.08993 * 109.47453 * 270.16694 * 1 2 3
28 28 H 1.08997 * 109.47193 * 30.16885 * 1 2 3
29 29 H 1.09003 * 109.46894 * 150.16968 * 1 2 3
30 30 H 1.08993 * 109.47708 * 180.02562 * 5 4 3
31 31 H 1.09000 * 109.47179 * 59.99738 * 6 5 4
32 32 H 1.09004 * 109.46908 * 179.97438 * 6 5 4
33 33 H 1.09004 * 109.47183 * 299.99482 * 6 5 4
34 34 H 1.08993 * 109.47168 * 180.02562 * 7 5 4
35 35 H 1.09006 * 109.47040 * 300.00973 * 7 5 4
36 36 H 1.09001 * 109.46577 * 60.00265 * 7 5 4
37 37 H 1.08003 * 127.02153 * 180.02562 * 8 4 3
38 38 H 0.96998 * 120.00196 * 184.54326 * 16 15 13
39 39 H 1.07998 * 120.45033 * 359.94954 * 22 21 12
40 40 H 1.07997 * 120.75401 * 180.24797 * 23 22 21
41 41 H 1.08006 * 120.34031 * 179.77919 * 24 23 22
42 42 H 1.07997 * 119.57919 * 180.22807 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.2891 1.0840 0.0000
4 6 3.5861 0.7390 -0.0067
5 6 4.7460 1.7010 -0.0154
6 6 4.6703 2.5798 -1.2656
7 6 4.6857 2.5839 1.2328
8 6 3.6857 -0.5990 -0.0051
9 6 2.3059 -1.1071 0.0034
10 6 1.8758 -2.5153 0.0082
11 8 0.9061 -2.8573 -0.6415
12 7 2.5565 -3.4254 0.7327
13 6 2.2268 -4.7533 0.6494
14 1 2.0767 -5.3299 1.5503
15 6 2.0856 -5.3575 -0.5935
16 7 2.9657 -5.1245 -1.5411
17 14 0.6446 -6.5010 -0.9179
18 1 -0.1968 -6.5953 0.3020
19 1 -0.1688 -5.9665 -2.0395
20 1 1.1535 -7.8497 -1.2744
21 6 3.5955 -3.0164 1.5661
22 6 3.4691 -1.8412 2.2991
23 6 4.5062 -1.4498 3.1273
24 6 5.6428 -2.2449 3.1862
25 6 5.7005 -3.3997 2.4303
26 7 4.6941 -3.7504 1.6534
27 1 -0.3634 0.0030 1.0276
28 1 -0.3633 0.8884 -0.5164
29 1 -0.3633 -0.8915 -0.5112
30 1 5.6817 1.1422 -0.0200
31 1 3.7345 3.1387 -1.2607
32 1 5.5090 3.2760 -1.2717
33 1 4.7132 1.9509 -2.1549
34 1 5.5244 3.2800 1.2263
35 1 3.7499 3.1428 1.2377
36 1 4.7396 1.9578 2.1235
37 1 4.5939 -1.1836 -0.0088
38 1 2.8322 -5.4930 -2.4284
39 1 2.5721 -1.2442 2.2258
40 1 4.4347 -0.5443 3.7115
41 1 6.4716 -1.9657 3.8200
42 1 6.5811 -4.0232 2.4758
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000892477014.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:44
Heat of formation + Delta-G solvation = 29.262810 kcal
Electronic energy + Delta-G solvation = -27140.405513 eV
Core-core repulsion = 23473.951770 eV
Total energy + Delta-G solvation = -3666.453743 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.87 seconds
Orbital eigenvalues (eV)
-42.24416 -39.77393 -38.02200 -35.60406 -34.55961 -32.97155 -31.99015 -31.54431
-30.89742 -29.10690 -27.23537 -26.73887 -25.13118 -23.21264 -22.56602 -21.86222
-21.61772 -20.54509 -18.55946 -17.58638 -16.70482 -16.07589 -15.79203 -15.62899
-15.27658 -14.80408 -14.62854 -14.34884 -14.10044 -13.78950 -13.53481 -13.26821
-13.08306 -12.84281 -12.61934 -12.49940 -12.45068 -12.37211 -12.24344 -11.81043
-11.68459 -11.44276 -11.27749 -11.19303 -11.06135 -10.81463 -10.71221 -10.26783
-9.45160 -9.31684 -8.94533 -8.75393 -8.49156 -8.34570 -7.95442 -7.28729
-6.43711 -4.02019 1.74803 1.86962 2.15710 2.63370 3.09831 3.29589
3.43014 3.46892 3.99831 4.12037 4.50803 4.63295 4.69394 4.84795
4.97691 5.05768 5.15972 5.26831 5.35872 5.39925 5.45645 5.52813
5.62104 5.67496 5.72955 5.73465 5.75599 5.82586 5.84956 5.99131
6.05724 6.14827 6.15703 6.17592 6.34026 6.38181 6.56197 6.68405
6.78833 6.82237 7.28962 7.52093 7.53176 8.07698 8.44938 8.79209
9.03891 9.36111 9.81256 10.55653
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.013420 B = 0.005977 C = 0.004734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2085.894118 B = 4683.412906 C = 5912.965673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.034 3.966
3 O -0.177 6.177
4 C -0.020 4.020
5 C -0.008 4.008
6 C -0.148 4.148
7 C -0.146 4.146
8 C -0.158 4.158
9 C -0.207 4.207
10 C 0.566 3.434
11 O -0.526 6.526
12 N -0.370 5.370
13 C -0.366 4.366
14 H 0.090 0.910
15 C 0.102 3.898
16 N -0.798 5.798
17 Si 0.899 3.101
18 H -0.264 1.264
19 H -0.275 1.275
20 H -0.287 1.287
21 C 0.362 3.638
22 C -0.200 4.200
23 C -0.062 4.062
24 C -0.233 4.233
25 C 0.118 3.882
26 N -0.480 5.480
27 H 0.079 0.921
28 H 0.073 0.927
29 H 0.106 0.894
30 H 0.096 0.904
31 H 0.059 0.941
32 H 0.061 0.939
33 H 0.059 0.941
34 H 0.061 0.939
35 H 0.059 0.941
36 H 0.060 0.940
37 H 0.145 0.855
38 H 0.269 0.731
39 H 0.123 0.877
40 H 0.120 0.880
41 H 0.120 0.880
42 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.909 14.312 5.429 15.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.018 4.018
3 O -0.075 6.075
4 C -0.068 4.068
5 C -0.027 4.027
6 C -0.205 4.205
7 C -0.203 4.203
8 C -0.177 4.177
9 C -0.211 4.211
10 C 0.356 3.644
11 O -0.404 6.404
12 N -0.082 5.082
13 C -0.490 4.490
14 H 0.107 0.893
15 C -0.114 4.114
16 N -0.427 5.427
17 Si 0.723 3.277
18 H -0.188 1.188
19 H -0.201 1.201
20 H -0.214 1.214
21 C 0.134 3.866
22 C -0.223 4.223
23 C -0.088 4.088
24 C -0.255 4.255
25 C -0.042 4.042
26 N -0.194 5.194
27 H 0.097 0.903
28 H 0.092 0.908
29 H 0.125 0.875
30 H 0.115 0.885
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.078 0.922
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.079 0.921
37 H 0.162 0.838
38 H 0.079 0.921
39 H 0.141 0.859
40 H 0.138 0.862
41 H 0.138 0.862
42 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 3.365 13.549 4.327 14.616
hybrid contribution -0.234 -0.047 0.196 0.309
sum 3.131 13.502 4.523 14.580
Atomic orbital electron populations
1.20464 0.84444 1.04872 1.03535 1.22470 0.93514 0.82956 1.02817
1.83573 1.16239 1.34867 1.72791 1.21898 0.82567 0.94071 1.08250
1.19684 0.92432 0.94062 0.96494 1.21866 1.02195 0.99439 0.97008
1.21848 1.02165 0.99351 0.96965 1.22541 0.96787 0.93011 1.05405
1.21440 0.93105 0.94804 1.11797 1.17245 0.82675 0.82605 0.81849
1.90606 1.27052 1.80130 1.42643 1.41099 1.22870 1.07327 1.36902
1.18830 1.52122 0.84514 0.93542 0.89264 1.25254 0.94566 0.95573
0.96028 1.70380 1.27991 1.40309 1.03985 0.86427 0.83413 0.78548
0.79265 1.18846 1.20071 1.21379 1.19264 0.86965 0.88396 0.91997
1.21754 1.01302 0.99165 1.00122 1.21112 0.92957 0.98406 0.96309
1.21746 0.99698 0.98525 1.05514 1.22493 0.96223 0.93992 0.91468
1.67464 0.99258 1.33711 1.18991 0.90258 0.90834 0.87546 0.88535
0.92192 0.91998 0.92202 0.92044 0.92235 0.92124 0.83765 0.92130
0.85946 0.86234 0.86228 0.83858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.16 10.23 36.00 0.37 -0.79 16
2 C 0.03 0.62 7.36 -34.93 -0.26 0.36 16
3 O -0.18 -2.93 10.52 7.61 0.08 -2.85 16
4 C -0.02 -0.31 5.79 -35.74 -0.21 -0.52 16
5 C -0.01 -0.10 3.32 -91.77 -0.30 -0.40 16
6 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16
7 C -0.15 -1.45 9.18 37.16 0.34 -1.11 16
8 C -0.16 -3.01 7.78 -37.45 -0.29 -3.31 16
9 C -0.21 -4.41 3.73 -103.29 -0.38 -4.79 16
10 C 0.57 14.55 6.98 -12.60 -0.09 14.47 16
11 O -0.53 -14.70 14.61 5.25 0.08 -14.62 16
12 N -0.37 -9.81 2.74 -61.90 -0.17 -9.98 16
13 C -0.37 -10.46 8.49 -14.96 -0.13 -10.59 16
14 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16
15 C 0.10 2.90 3.87 -17.48 -0.07 2.83 16
16 N -0.80 -23.48 13.90 55.49 0.77 -22.71 16
17 Si 0.90 22.14 29.69 -169.99 -5.05 17.10 16
18 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16
19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
21 C 0.36 8.47 5.45 -154.70 -0.84 7.63 16
22 C -0.20 -3.87 6.42 -39.22 -0.25 -4.12 16
23 C -0.06 -0.98 10.17 -39.31 -0.40 -1.38 16
24 C -0.23 -3.55 10.11 -39.40 -0.40 -3.95 16
25 C 0.12 2.14 11.18 -17.57 -0.20 1.94 16
26 N -0.48 -11.16 9.95 -12.35 -0.12 -11.28 16
27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.11 1.84 6.65 -51.93 -0.35 1.50 16
30 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16
31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.14 2.93 7.46 -52.48 -0.39 2.54 16
38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
39 H 0.12 2.37 6.29 -52.49 -0.33 2.04 16
40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16
41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16
42 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16
LS Contribution 356.12 15.07 5.37 5.37
Total: -1.00 -33.46 356.12 -7.51 -40.97
By element:
Atomic # 1 Polarization: 8.64 SS G_CDS: -5.70 Total: 2.94 kcal
Atomic # 6 Polarization: -2.17 SS G_CDS: -2.77 Total: -4.94 kcal
Atomic # 7 Polarization: -44.44 SS G_CDS: 0.48 Total: -43.96 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: 0.16 Total: -17.47 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.05 Total: 17.10 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -33.46 -7.51 -40.97 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892477014.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.229 kcal
(2) G-P(sol) polarization free energy of solvation -33.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.87 seconds