Wall clock time and date at job start Tue Mar 31 2020 11:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33669 * 125.81100 * 2 1 4 4 C 1.34217 * 110.91431 * 180.30590 * 3 2 1 5 5 C 1.50697 * 125.42943 * 179.68861 * 4 3 2 6 6 C 1.53004 * 109.46766 * 300.04096 * 5 4 3 7 7 C 1.53006 * 109.47212 * 60.03508 * 5 4 3 8 8 C 1.34171 * 109.15214 * 359.71787 * 4 3 2 9 9 C 1.36527 * 125.81607 * 179.82474 * 2 1 3 10 10 C 1.47249 * 127.19947 * 359.97438 * 9 2 1 11 11 O 1.21626 * 120.00229 * 38.18579 * 10 9 2 12 12 N 1.34776 * 120.00105 * 218.19314 * 10 9 2 13 13 C 1.37076 * 120.00041 * 185.50305 * 12 10 9 14 14 H 1.08009 * 119.99378 * 229.34096 * 13 12 10 15 15 C 1.38915 * 120.00649 * 49.33463 * 13 12 10 16 16 N 1.31418 * 119.99884 * 44.04301 * 15 13 12 17 17 Si 1.86796 * 120.00510 * 224.04339 * 15 13 12 18 18 H 1.48499 * 109.46986 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47388 * 119.99936 * 17 15 13 20 20 H 1.48496 * 109.47232 * 239.99973 * 17 15 13 21 21 C 1.39335 * 119.99696 * 5.49067 * 12 10 9 22 22 C 1.39088 * 119.70010 * 39.45134 * 21 12 10 23 23 C 1.38368 * 119.09864 * 179.71894 * 22 21 12 24 24 C 1.38836 * 118.49116 * 0.49828 * 23 22 21 25 25 C 1.38142 * 119.32047 * 359.49863 * 24 23 22 26 26 N 1.31881 * 120.84901 * 0.25806 * 25 24 23 27 27 H 1.08993 * 109.47453 * 270.16694 * 1 2 3 28 28 H 1.08997 * 109.47193 * 30.16885 * 1 2 3 29 29 H 1.09003 * 109.46894 * 150.16968 * 1 2 3 30 30 H 1.08993 * 109.47708 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47179 * 59.99738 * 6 5 4 32 32 H 1.09004 * 109.46908 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47183 * 299.99482 * 6 5 4 34 34 H 1.08993 * 109.47168 * 180.02562 * 7 5 4 35 35 H 1.09006 * 109.47040 * 300.00973 * 7 5 4 36 36 H 1.09001 * 109.46577 * 60.00265 * 7 5 4 37 37 H 1.08003 * 127.02153 * 180.02562 * 8 4 3 38 38 H 0.96998 * 120.00196 * 184.54326 * 16 15 13 39 39 H 1.07998 * 120.45033 * 359.94954 * 22 21 12 40 40 H 1.07997 * 120.75401 * 180.24797 * 23 22 21 41 41 H 1.08006 * 120.34031 * 179.77919 * 24 23 22 42 42 H 1.07997 * 119.57919 * 180.22807 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2891 1.0840 0.0000 4 6 3.5861 0.7390 -0.0067 5 6 4.7460 1.7010 -0.0154 6 6 4.6703 2.5798 -1.2656 7 6 4.6857 2.5839 1.2328 8 6 3.6857 -0.5990 -0.0051 9 6 2.3059 -1.1071 0.0034 10 6 1.8758 -2.5153 0.0082 11 8 0.9061 -2.8573 -0.6415 12 7 2.5565 -3.4254 0.7327 13 6 2.2268 -4.7533 0.6494 14 1 2.0767 -5.3299 1.5503 15 6 2.0856 -5.3575 -0.5935 16 7 2.9657 -5.1245 -1.5411 17 14 0.6446 -6.5010 -0.9179 18 1 -0.1968 -6.5953 0.3020 19 1 -0.1688 -5.9665 -2.0395 20 1 1.1535 -7.8497 -1.2744 21 6 3.5955 -3.0164 1.5661 22 6 3.4691 -1.8412 2.2991 23 6 4.5062 -1.4498 3.1273 24 6 5.6428 -2.2449 3.1862 25 6 5.7005 -3.3997 2.4303 26 7 4.6941 -3.7504 1.6534 27 1 -0.3634 0.0030 1.0276 28 1 -0.3633 0.8884 -0.5164 29 1 -0.3633 -0.8915 -0.5112 30 1 5.6817 1.1422 -0.0200 31 1 3.7345 3.1387 -1.2607 32 1 5.5090 3.2760 -1.2717 33 1 4.7132 1.9509 -2.1549 34 1 5.5244 3.2800 1.2263 35 1 3.7499 3.1428 1.2377 36 1 4.7396 1.9578 2.1235 37 1 4.5939 -1.1836 -0.0088 38 1 2.8322 -5.4930 -2.4284 39 1 2.5721 -1.2442 2.2258 40 1 4.4347 -0.5443 3.7115 41 1 6.4716 -1.9657 3.8200 42 1 6.5811 -4.0232 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892477014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:41 Heat of formation + Delta-G solvation = 8.931465 kcal Electronic energy + Delta-G solvation = -27141.287146 eV Core-core repulsion = 23473.951770 eV Total energy + Delta-G solvation = -3667.335377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -43.66124 -41.40405 -39.76124 -36.62621 -36.36792 -34.68422 -33.78453 -33.01180 -32.19592 -30.70331 -28.25733 -28.00453 -26.87926 -24.83411 -24.04389 -23.43675 -22.70127 -22.08642 -20.16154 -19.44967 -18.13446 -17.52092 -17.36264 -17.13027 -16.65592 -16.52275 -16.17991 -15.77106 -15.64432 -15.28839 -15.08655 -14.57357 -14.42883 -14.19181 -14.02612 -13.89933 -13.79621 -13.70980 -13.66393 -13.23124 -12.97948 -12.93069 -12.75538 -12.67085 -12.22130 -12.12993 -12.10604 -11.82518 -11.06962 -10.95599 -10.80651 -10.49663 -10.19827 -10.04705 -9.33924 -9.07847 -8.49716 -6.16343 0.24153 0.45703 0.72140 1.15585 1.30371 1.39992 1.49175 1.75926 2.15446 2.31854 2.69982 2.86023 3.21923 3.43941 3.70050 3.83470 3.96447 4.03537 4.15140 4.20573 4.24153 4.37066 4.40919 4.42529 4.60104 4.60827 4.63643 4.76377 4.82387 4.87459 4.96061 4.97035 5.01770 5.10241 5.22496 5.28777 5.34262 5.36195 5.37456 5.42206 5.42580 5.86517 6.07476 6.12986 6.60445 6.80427 7.16247 7.61643 7.87599 8.46768 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.005977 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.894118 B = 4683.412906 C = 5912.965673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 O -0.165 6.165 4 C 0.010 3.990 5 C -0.011 4.011 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.182 4.182 9 C -0.244 4.244 10 C 0.557 3.443 11 O -0.572 6.572 12 N -0.391 5.391 13 C -0.386 4.386 14 H 0.072 0.928 15 C 0.063 3.937 16 N -0.842 5.842 17 Si 0.953 3.047 18 H -0.260 1.260 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.330 3.670 22 C -0.192 4.192 23 C -0.052 4.052 24 C -0.196 4.196 25 C 0.099 3.901 26 N -0.531 5.531 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 17.873 7.678 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.004 4.004 3 O -0.062 6.062 4 C -0.039 4.039 5 C -0.029 4.029 6 C -0.203 4.203 7 C -0.198 4.198 8 C -0.202 4.202 9 C -0.248 4.248 10 C 0.348 3.652 11 O -0.454 6.454 12 N -0.105 5.105 13 C -0.511 4.511 14 H 0.090 0.910 15 C -0.149 4.149 16 N -0.473 5.473 17 Si 0.776 3.224 18 H -0.184 1.184 19 H -0.209 1.209 20 H -0.195 1.195 21 C 0.103 3.897 22 C -0.216 4.216 23 C -0.078 4.078 24 C -0.216 4.216 25 C -0.060 4.060 26 N -0.246 5.246 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.184 0.816 41 H 0.190 0.810 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.080 17.109 6.630 19.039 hybrid contribution -0.535 -0.964 -0.317 1.147 sum 4.545 16.144 6.313 17.921 Atomic orbital electron populations 1.20555 0.82469 1.05135 1.05061 1.22861 0.94624 0.82362 1.00521 1.83633 1.16492 1.33867 1.72178 1.22603 0.83107 0.93699 1.04494 1.19977 0.90543 0.93877 0.98505 1.21870 1.03525 0.99395 0.95515 1.21839 1.03362 0.99263 0.95379 1.22279 0.95153 0.94157 1.08617 1.21221 0.95079 0.93217 1.15300 1.17802 0.82199 0.84298 0.80859 1.90534 1.29030 1.81343 1.44501 1.41163 1.24614 1.06693 1.38001 1.18765 1.53464 0.85790 0.93071 0.91042 1.25984 0.96106 0.96945 0.95821 1.70424 1.29505 1.42902 1.04427 0.85595 0.80537 0.77530 0.78736 1.18388 1.20935 1.19521 1.19328 0.87197 0.90709 0.92502 1.21753 1.02343 0.97600 0.99877 1.21643 0.91539 0.99652 0.94993 1.22281 1.00370 0.95948 1.03051 1.23087 0.95713 0.95805 0.91373 1.67310 1.00607 1.35365 1.21278 0.88036 0.87409 0.90273 0.87782 0.92231 0.89029 0.93682 0.89297 0.92356 0.92115 0.85793 0.92124 0.86392 0.81583 0.80994 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 10.23 71.24 0.73 -1.52 16 2 C 0.05 1.75 7.36 25.28 0.19 1.93 16 3 O -0.16 -5.13 10.52 4.30 0.05 -5.08 16 4 C 0.01 0.29 5.79 24.76 0.14 0.43 16 5 C -0.01 -0.22 3.32 -11.54 -0.04 -0.26 16 6 C -0.15 -2.60 9.18 71.98 0.66 -1.94 16 7 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 8 C -0.18 -7.03 7.78 23.65 0.18 -6.85 16 9 C -0.24 -10.74 3.73 -19.00 -0.07 -10.81 16 10 C 0.56 30.48 6.98 86.61 0.60 31.09 16 11 O -0.57 -34.31 14.61 -4.11 -0.06 -34.37 16 12 N -0.39 -22.10 2.74 -467.99 -1.28 -23.38 16 13 C -0.39 -23.61 8.49 84.04 0.71 -22.90 16 14 H 0.07 4.42 8.06 -2.91 -0.02 4.40 16 15 C 0.06 3.82 3.87 84.92 0.33 4.15 16 16 N -0.84 -52.76 13.90 21.66 0.30 -52.46 16 17 Si 0.95 48.07 29.69 68.60 2.04 50.10 16 18 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.33 15.97 5.45 132.94 0.72 16.70 16 22 C -0.19 -7.35 6.42 22.50 0.14 -7.21 16 23 C -0.05 -1.46 10.17 22.44 0.23 -1.23 16 24 C -0.20 -5.09 10.11 22.39 0.23 -4.87 16 25 C 0.10 3.41 11.18 84.66 0.95 4.36 16 26 N -0.53 -25.36 9.95 -193.00 -1.92 -27.28 16 27 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 2.85 6.65 -2.39 -0.02 2.84 16 30 H 0.10 2.00 8.09 -2.39 -0.02 1.98 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 5.24 7.46 -2.91 -0.02 5.22 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.12 4.56 6.29 -2.91 -0.02 4.55 16 40 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 42 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -81.87 356.12 6.51 -75.36 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.03 Total: 17.51 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.37 Total: -0.39 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.90 Total: -103.12 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.01 Total: -39.45 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.04 Total: 50.10 kcal Total: -81.87 6.51 -75.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.289 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds