Wall clock time and date at job start Tue Mar 31 2020 10:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21225 * 119.99914 * 2 1 4 4 C 1.47398 * 119.99771 * 180.02562 * 2 1 3 5 5 C 1.39825 * 120.02663 * 356.68390 * 4 2 1 6 6 C 1.37749 * 119.97083 * 180.27616 * 5 4 2 7 7 C 1.39594 * 120.02924 * 359.49260 * 6 5 4 8 8 C 1.48065 * 119.97541 * 180.28162 * 7 6 5 9 9 O 1.21514 * 120.00676 * 138.61123 * 8 7 6 10 10 N 1.34779 * 119.99483 * 318.60597 * 8 7 6 11 11 C 1.46499 * 119.99920 * 177.59242 * 10 8 7 12 12 C 1.50698 * 109.47344 * 89.99889 * 11 10 8 13 13 H 1.07995 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99898 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99750 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47601 * 59.99591 * 16 14 12 18 18 H 1.48505 * 109.47090 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47021 * 299.99516 * 16 14 12 20 20 C 1.46500 * 120.00367 * 357.59053 * 10 8 7 21 21 C 1.53007 * 109.46928 * 105.82211 * 20 10 8 22 22 C 1.47202 * 109.46998 * 185.32129 * 21 20 10 23 23 N 6.85260 * 73.95029 * 154.91523 * 2 1 3 24 24 C 1.39551 * 120.05236 * 0.50674 * 7 6 5 25 25 C 1.37795 * 120.03136 * 359.74480 * 24 7 6 26 26 C 1.50697 * 120.01751 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.47461 * 270.00211 * 1 2 3 28 28 H 1.09006 * 109.46819 * 29.99643 * 1 2 3 29 29 H 1.08995 * 109.47362 * 150.00092 * 1 2 3 30 30 H 1.07998 * 120.01757 * 359.97438 * 5 4 2 31 31 H 1.08004 * 119.98807 * 179.74092 * 6 5 4 32 32 H 1.09003 * 109.47338 * 210.00351 * 11 10 8 33 33 H 1.09003 * 109.46905 * 330.00177 * 11 10 8 34 34 H 0.97000 * 119.99797 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47245 * 225.81838 * 20 10 8 36 36 H 1.08997 * 109.46842 * 345.82666 * 20 10 8 37 37 H 1.09000 * 109.46988 * 305.31775 * 21 20 10 38 38 H 1.08996 * 109.46804 * 65.31730 * 21 20 10 39 39 H 1.08001 * 119.98549 * 179.77562 * 24 7 6 40 40 H 1.08997 * 109.47150 * 263.24719 * 26 25 24 41 41 H 1.09002 * 109.47021 * 23.24681 * 26 25 24 42 42 H 1.08997 * 109.46921 * 143.24711 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2439 -1.2765 -0.0006 5 6 1.5471 -2.4868 0.0689 6 6 2.2372 -3.6789 0.0740 7 6 3.6312 -3.6795 -0.0008 8 6 4.3714 -4.9618 -0.0015 9 8 5.3204 -5.1152 -0.7448 10 7 3.9928 -5.9588 0.8226 11 6 4.6917 -7.2458 0.7846 12 6 5.8439 -7.2205 1.7555 13 1 6.0361 -6.3346 2.3425 14 6 6.6528 -8.3285 1.8945 15 7 6.4185 -9.4075 1.1801 16 14 8.0806 -8.2973 3.0985 17 1 7.5663 -8.0543 4.4703 18 1 8.7900 -9.6014 3.0591 19 1 9.0213 -7.2113 2.7229 20 6 2.8822 -5.7557 1.7562 21 6 1.6487 -6.5083 1.2530 22 6 0.4994 -6.2020 2.1202 23 7 -0.3875 -5.9644 2.7920 24 6 4.3278 -2.4723 -0.0702 25 6 3.6401 -1.2782 -0.0702 26 6 4.3927 0.0253 -0.1446 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.4685 -2.4868 0.1235 31 1 1.6994 -4.6137 0.1319 32 1 4.0011 -8.0426 1.0609 33 1 5.0689 -7.4248 -0.2223 34 1 6.9878 -10.1868 1.2776 35 1 3.1613 -6.1325 2.7402 36 1 2.6556 -4.6918 1.8252 37 1 1.4260 -6.1990 0.2318 38 1 1.8439 -7.5804 1.2735 39 1 5.4064 -2.4739 -0.1244 40 1 4.5200 0.4291 0.8597 41 1 5.3709 -0.1452 -0.5944 42 1 3.8316 0.7345 -0.7530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906378106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:33 Heat of formation + Delta-G solvation = -10.173895 kcal Electronic energy + Delta-G solvation = -25567.728935 eV Core-core repulsion = 21899.565088 eV Total energy + Delta-G solvation = -3668.163847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68090 -39.54698 -37.75180 -36.98014 -35.42667 -33.26683 -32.78108 -32.11232 -30.99323 -29.69106 -27.67162 -26.95918 -24.79062 -24.07923 -22.59400 -21.84250 -20.30192 -18.88205 -17.86449 -17.08595 -16.66693 -16.46880 -16.26912 -15.53160 -15.36328 -15.12597 -14.70149 -14.50182 -14.32340 -14.07650 -13.72380 -13.53906 -13.27683 -13.16511 -12.80402 -12.58967 -12.53422 -12.45065 -12.38515 -12.10761 -12.07207 -11.94554 -11.78405 -11.31629 -11.20122 -10.97178 -10.94198 -10.67361 -10.24875 -9.81160 -9.72029 -9.29946 -9.04561 -8.80819 -8.51648 -7.96901 -6.13992 -4.18787 0.32572 1.19101 2.07359 2.65593 2.73345 3.14379 3.27809 3.32692 3.35149 3.47309 3.73131 3.80054 4.08609 4.37526 4.53395 4.61122 4.69609 4.78497 4.97596 5.00210 5.05985 5.09677 5.13030 5.21248 5.24949 5.35925 5.45414 5.54295 5.66686 5.67878 5.76363 5.82257 5.97420 6.05196 6.06899 6.24006 6.38106 6.65371 6.84379 7.24314 7.30021 7.31762 7.50411 7.81539 8.08487 8.11346 8.69288 8.87246 9.46912 10.94162 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003869 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.305833 B = 7235.687735 C = 8597.850749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.394 3.606 3 O -0.454 6.454 4 C -0.169 4.169 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.076 4.076 8 C 0.545 3.455 9 O -0.519 6.519 10 N -0.587 5.587 11 C 0.244 3.756 12 C -0.531 4.531 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.105 3.895 21 C -0.055 4.055 22 C 0.215 3.785 23 N -0.440 5.440 24 C -0.086 4.086 25 C -0.027 4.027 26 C -0.124 4.124 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 13.320 -2.570 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.273 3.727 3 O -0.331 6.331 4 C -0.170 4.170 5 C -0.094 4.094 6 C -0.144 4.144 7 C -0.079 4.079 8 C 0.331 3.669 9 O -0.395 6.395 10 N -0.317 5.317 11 C 0.126 3.874 12 C -0.570 4.570 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.021 4.021 21 C -0.096 4.096 22 C -0.103 4.103 23 N -0.118 5.118 24 C -0.105 4.105 25 C -0.028 4.028 26 C -0.180 4.180 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.793 13.904 -2.000 19.000 hybrid contribution 1.072 -0.500 0.497 1.283 sum -11.721 13.404 -1.503 17.869 Atomic orbital electron populations 1.22248 0.93828 1.04923 1.04815 1.22531 0.91558 0.87603 0.70964 1.90480 1.71444 1.34622 1.36537 1.20406 0.93934 0.94861 1.07843 1.21335 1.00000 0.91141 0.96915 1.21659 0.93257 0.99123 1.00394 1.20506 0.94065 0.94774 0.98584 1.18262 0.84005 0.83181 0.81496 1.90798 1.27224 1.80971 1.40544 1.48150 1.32165 1.15683 1.35736 1.19409 0.91719 0.77099 0.99168 1.21355 1.13008 0.99716 1.22921 0.92333 1.24901 0.97578 0.95273 0.96082 1.69900 1.39283 1.03772 1.40226 0.86571 0.82391 0.77332 0.81231 1.20205 1.21160 1.20133 1.21604 0.84946 1.00573 0.94964 1.19975 0.87735 1.05271 0.96611 1.29111 0.94198 0.93093 0.93904 1.81286 1.11498 1.09244 1.09746 1.21168 1.00893 0.90100 0.98348 1.20166 0.92459 0.95885 0.94262 1.21131 0.99501 0.93966 1.03391 0.88424 0.89440 0.89469 0.84692 0.84221 0.94340 0.93384 0.92536 0.88982 0.89501 0.87125 0.85832 0.84380 0.90587 0.91807 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 9.68 36.01 0.35 -0.92 16 2 C 0.39 3.96 7.19 -30.58 -0.22 3.74 16 3 O -0.45 -5.72 14.01 5.60 0.08 -5.64 16 4 C -0.17 -1.85 5.87 -105.00 -0.62 -2.47 16 5 C -0.08 -0.72 9.33 -39.17 -0.37 -1.09 16 6 C -0.13 -1.41 7.38 -39.25 -0.29 -1.70 16 7 C -0.08 -1.10 5.08 -104.87 -0.53 -1.64 16 8 C 0.54 10.17 7.31 -12.23 -0.09 10.08 16 9 O -0.52 -12.08 16.54 5.35 0.09 -11.99 16 10 N -0.59 -10.51 2.50 -176.09 -0.44 -10.95 16 11 C 0.24 5.57 5.08 -5.20 -0.03 5.55 16 12 C -0.53 -13.85 9.39 -34.44 -0.32 -14.18 16 13 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.11 1.38 4.84 -4.04 -0.02 1.36 16 21 C -0.05 -0.56 5.02 -29.51 -0.15 -0.70 16 22 C 0.22 2.42 15.44 -20.70 -0.32 2.10 16 23 N -0.44 -6.01 18.55 42.22 0.78 -5.23 16 24 C -0.09 -1.21 9.26 -39.25 -0.36 -1.57 16 25 C -0.03 -0.34 5.91 -104.21 -0.62 -0.96 16 26 C -0.12 -1.40 8.76 36.00 0.32 -1.08 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.40 6.60 -51.93 -0.34 0.06 16 30 H 0.14 0.87 6.43 -52.49 -0.34 0.53 16 31 H 0.14 1.31 3.87 -52.48 -0.20 1.11 16 32 H 0.04 0.85 7.36 -51.93 -0.38 0.47 16 33 H 0.05 1.26 7.46 -51.93 -0.39 0.87 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.02 4.92 -51.93 -0.26 0.76 16 37 H 0.11 0.90 6.24 -51.93 -0.32 0.58 16 38 H 0.12 1.24 7.51 -51.93 -0.39 0.85 16 39 H 0.14 1.99 8.05 -52.49 -0.42 1.57 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.65 8.04 -51.93 -0.42 0.24 16 42 H 0.09 1.09 5.77 -51.93 -0.30 0.79 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -32.86 357.67 -6.75 -39.60 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.00 Total: -1.05 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.36 Total: -1.85 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 1.08 Total: -40.32 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.86 -6.75 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906378106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.431 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds