Wall clock time and date at job start Tue Mar 31 2020 10:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99954 * 2 1 4 4 H 1.48505 * 109.46724 * 269.99581 * 3 2 1 5 5 H 1.48490 * 109.46995 * 29.99515 * 3 2 1 6 6 H 1.48502 * 109.47178 * 149.99722 * 3 2 1 7 7 C 1.37878 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46661 * 299.99424 * 9 7 2 11 11 O 1.42898 * 109.47112 * 59.99616 * 9 7 2 12 12 C 1.52997 * 109.47198 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47389 * 179.84390 * 12 9 7 14 14 C 1.46949 * 111.00204 * 284.15358 * 13 12 9 15 15 C 1.53049 * 109.36612 * 176.80897 * 14 13 12 16 16 N 1.46959 * 109.36327 * 58.40149 * 15 14 13 17 17 C 1.46898 * 110.99735 * 176.81454 * 16 15 14 18 18 C 1.52997 * 109.47523 * 76.69468 * 17 16 15 19 19 F 1.39900 * 109.47239 * 306.00156 * 18 17 16 20 20 F 1.39899 * 109.47266 * 65.99794 * 18 17 16 21 21 C 1.53003 * 109.47333 * 186.00111 * 18 17 16 22 22 F 1.39891 * 109.47265 * 59.99926 * 21 18 17 23 23 F 1.39905 * 109.46922 * 179.97438 * 21 18 17 24 24 C 1.46958 * 110.87914 * 300.67852 * 16 15 14 25 25 C 1.46960 * 111.00015 * 160.34859 * 13 12 9 26 26 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00176 * 59.99897 * 11 9 7 28 28 H 1.09003 * 109.47190 * 59.84362 * 12 9 7 29 29 H 1.09006 * 109.47219 * 299.84739 * 12 9 7 30 30 H 1.09005 * 109.48697 * 56.83928 * 14 13 12 31 31 H 1.08999 * 109.50816 * 296.78668 * 14 13 12 32 32 H 1.09006 * 109.49149 * 178.36719 * 15 14 13 33 33 H 1.09000 * 109.49069 * 298.43341 * 15 14 13 34 34 H 1.09000 * 109.46920 * 196.69431 * 17 16 15 35 35 H 1.08999 * 109.47276 * 316.69401 * 17 16 15 36 36 H 1.09003 * 109.46689 * 300.00003 * 21 18 17 37 37 H 1.09001 * 109.48526 * 299.35494 * 24 16 15 38 38 H 1.08999 * 109.50462 * 179.30250 * 24 16 15 39 39 H 1.08997 * 109.49152 * 303.16313 * 25 13 12 40 40 H 1.09000 * 109.48615 * 63.22351 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5109 -4.9343 0.0043 14 6 0.9598 -5.2203 1.3362 15 6 0.1375 -6.5098 1.2789 16 7 0.9922 -7.6128 0.8178 17 6 0.2577 -8.8849 0.8215 18 6 -0.6793 -8.9364 -0.3869 19 9 -1.4958 -7.8005 -0.3926 20 9 0.0777 -8.9724 -1.5628 21 6 -1.5513 -10.1909 -0.3031 22 9 -2.3083 -10.1549 0.8727 23 9 -2.4084 -10.2376 -1.4078 24 6 1.5433 -7.3267 -0.5142 25 6 2.3656 -6.0372 -0.4569 26 1 -0.4850 0.8401 -0.0004 27 1 0.9223 -2.5299 -1.9975 28 1 2.8739 -3.6027 0.8891 29 1 2.8702 -3.6058 -0.8909 30 1 0.3207 -4.3950 1.6502 31 1 1.7753 -5.3405 2.0494 32 1 -0.2484 -6.7396 2.2722 33 1 -0.6943 -6.3803 0.5864 34 1 0.9647 -9.7128 0.7686 35 1 -0.3268 -8.9643 1.7381 36 1 -0.9150 -11.0759 -0.2986 37 1 0.7275 -7.2064 -1.2270 38 1 2.1823 -8.1519 -0.8286 39 1 2.7515 -5.8074 -1.4501 40 1 3.1974 -6.1667 0.2356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929649016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:18 Heat of formation + Delta-G solvation = -221.004617 kcal Electronic energy + Delta-G solvation = -28071.093243 eV Core-core repulsion = 23421.161124 eV Total energy + Delta-G solvation = -4649.932118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.25514 -49.05314 -47.81404 -47.38669 -39.10961 -36.36055 -34.55464 -32.04551 -31.68203 -30.77090 -28.89624 -26.92370 -24.88974 -23.67851 -23.20311 -22.35170 -20.42829 -19.77925 -18.85661 -18.53995 -17.94154 -17.08577 -17.00012 -16.56263 -15.67116 -15.20734 -15.14012 -14.93610 -14.66207 -14.49214 -14.46657 -14.25060 -13.99622 -13.90912 -13.72060 -13.69193 -13.45020 -13.21070 -12.97156 -12.52818 -12.47792 -12.22191 -11.79889 -11.54243 -11.12275 -10.99602 -10.92936 -10.87486 -10.82220 -10.51353 -10.36124 -9.97339 -8.98697 -8.54238 -8.49371 -8.07567 -7.57156 -5.96883 -4.15505 2.34458 3.20105 3.29353 3.36328 3.36820 3.38653 3.44397 3.52861 3.86032 4.26535 4.32286 4.37344 4.50918 4.87451 4.94755 5.08858 5.26878 5.30794 5.44261 5.53234 5.67955 5.69308 5.91295 6.05845 6.09881 6.21122 6.28380 6.36842 6.62433 6.70638 6.82577 6.86024 7.54745 7.63206 7.81272 7.92987 8.24307 8.88738 9.50679 9.67512 11.07125 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.029204 B = 0.003075 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.541671 B = 9102.762150 C = 9359.696098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.240 3.760 10 H 0.052 0.948 11 O -0.553 6.553 12 C 0.032 3.968 13 N -0.527 5.527 14 C 0.062 3.938 15 C 0.035 3.965 16 N -0.523 5.523 17 C 0.019 3.981 18 C 0.213 3.787 19 F -0.168 7.168 20 F -0.173 7.173 21 C 0.234 3.766 22 F -0.181 7.181 23 F -0.185 7.185 24 C 0.041 3.959 25 C 0.057 3.943 26 H 0.260 0.740 27 H 0.341 0.659 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -23.278 1.286 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.182 3.818 10 H 0.070 0.930 11 O -0.355 6.355 12 C -0.095 4.095 13 N -0.252 5.252 14 C -0.067 4.067 15 C -0.092 4.092 16 N -0.245 5.245 17 C -0.112 4.112 18 C 0.173 3.827 19 F -0.149 7.149 20 F -0.154 7.154 21 C 0.178 3.822 22 F -0.162 7.162 23 F -0.166 7.166 24 C -0.086 4.086 25 C -0.072 4.072 26 H 0.070 0.930 27 H 0.184 0.816 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.141 -23.149 1.741 23.214 hybrid contribution 0.863 1.084 -0.507 1.475 sum 0.722 -22.064 1.234 22.111 Atomic orbital electron populations 1.70087 1.05901 1.26344 1.47031 1.25021 0.94663 0.99025 0.93892 0.86690 0.79936 0.83635 0.78192 1.20536 1.21136 1.19909 1.21668 0.93109 0.91693 1.54866 0.92801 1.19268 0.87774 0.88350 0.86447 0.92984 1.86572 1.37682 1.96298 1.14906 1.23094 0.97102 0.89743 0.99594 1.62176 1.35902 1.02173 1.24956 1.22101 0.98156 0.96259 0.90142 1.22675 0.95756 0.89966 1.00828 1.62401 1.33848 1.01469 1.26761 1.23465 0.95691 0.97008 0.95031 1.23407 0.87281 0.84434 0.87587 1.93074 1.73412 1.51760 1.96666 1.93067 1.75935 1.96188 1.50170 1.22902 0.86294 1.00225 0.72755 1.93060 1.78196 1.97507 1.47453 1.93080 1.72884 1.97476 1.53191 1.22685 0.99377 0.97787 0.88797 1.22146 0.94169 0.90503 1.00367 0.93021 0.81630 0.95292 0.92033 0.89409 0.94902 0.90450 0.91050 0.86922 0.86825 0.84171 0.91977 0.90330 0.90496 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.68 12.84 55.43 0.71 -24.97 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.57 -15.89 8.76 -34.44 -0.30 -16.19 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.24 6.14 2.88 -27.88 -0.08 6.06 16 10 H 0.05 1.47 6.88 -51.93 -0.36 1.11 16 11 O -0.55 -14.74 12.60 -35.23 -0.44 -15.19 16 12 C 0.03 0.67 4.60 -3.83 -0.02 0.65 16 13 N -0.53 -9.74 4.51 -234.47 -1.06 -10.80 16 14 C 0.06 1.06 5.43 -3.77 -0.02 1.03 16 15 C 0.03 0.50 5.23 -3.77 -0.02 0.48 16 16 N -0.52 -6.35 4.92 -234.47 -1.15 -7.50 16 17 C 0.02 0.16 5.26 -3.83 -0.02 0.14 16 18 C 0.21 2.12 1.33 -26.73 -0.04 2.08 16 19 F -0.17 -2.34 13.54 2.25 0.03 -2.30 16 20 F -0.17 -1.89 13.64 2.25 0.03 -1.86 16 21 C 0.23 1.78 4.83 37.16 0.18 1.96 16 22 F -0.18 -1.58 16.70 2.25 0.04 -1.55 16 23 F -0.19 -1.95 17.30 2.25 0.04 -1.91 16 24 C 0.04 0.53 4.15 -3.77 -0.02 0.52 16 25 C 0.06 0.86 5.57 -3.77 -0.02 0.84 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.34 8.19 9.04 45.56 0.41 8.60 16 28 H 0.03 0.60 7.99 -51.93 -0.42 0.19 16 29 H 0.06 1.24 7.84 -51.93 -0.41 0.84 16 30 H 0.09 1.66 6.80 -51.93 -0.35 1.31 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 33 H 0.07 1.15 5.45 -51.93 -0.28 0.87 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.82 7.39 -51.93 -0.38 0.43 16 36 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.93 5.50 -51.93 -0.29 0.64 16 38 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 39 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -32.80 329.76 -6.85 -39.65 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.55 Total: 5.45 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.45 Total: -0.26 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -1.50 Total: -43.28 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.44 Total: -15.19 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.14 Total: -7.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.80 -6.85 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929649016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.352 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds