Wall clock time and date at job start Tue Mar 31 2020 10:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99954 * 2 1 4 4 H 1.48505 * 109.46724 * 269.99581 * 3 2 1 5 5 H 1.48490 * 109.46995 * 29.99515 * 3 2 1 6 6 H 1.48502 * 109.47178 * 149.99722 * 3 2 1 7 7 C 1.37878 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46661 * 299.99424 * 9 7 2 11 11 O 1.42898 * 109.47112 * 59.99616 * 9 7 2 12 12 C 1.52997 * 109.47198 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47389 * 179.84390 * 12 9 7 14 14 C 1.46949 * 111.00204 * 284.15358 * 13 12 9 15 15 C 1.53049 * 109.36612 * 176.80897 * 14 13 12 16 16 N 1.46959 * 109.36327 * 58.40149 * 15 14 13 17 17 C 1.46898 * 110.99735 * 176.81454 * 16 15 14 18 18 C 1.52997 * 109.47523 * 76.69468 * 17 16 15 19 19 F 1.39900 * 109.47239 * 306.00156 * 18 17 16 20 20 F 1.39899 * 109.47266 * 65.99794 * 18 17 16 21 21 C 1.53003 * 109.47333 * 186.00111 * 18 17 16 22 22 F 1.39891 * 109.47265 * 59.99926 * 21 18 17 23 23 F 1.39905 * 109.46922 * 179.97438 * 21 18 17 24 24 C 1.46958 * 110.87914 * 300.67852 * 16 15 14 25 25 C 1.46960 * 111.00015 * 160.34859 * 13 12 9 26 26 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00176 * 59.99897 * 11 9 7 28 28 H 1.09003 * 109.47190 * 59.84362 * 12 9 7 29 29 H 1.09006 * 109.47219 * 299.84739 * 12 9 7 30 30 H 1.09005 * 109.48697 * 56.83928 * 14 13 12 31 31 H 1.08999 * 109.50816 * 296.78668 * 14 13 12 32 32 H 1.09006 * 109.49149 * 178.36719 * 15 14 13 33 33 H 1.09000 * 109.49069 * 298.43341 * 15 14 13 34 34 H 1.09000 * 109.46920 * 196.69431 * 17 16 15 35 35 H 1.08999 * 109.47276 * 316.69401 * 17 16 15 36 36 H 1.09003 * 109.46689 * 300.00003 * 21 18 17 37 37 H 1.09001 * 109.48526 * 299.35494 * 24 16 15 38 38 H 1.08999 * 109.50462 * 179.30250 * 24 16 15 39 39 H 1.08997 * 109.49152 * 303.16313 * 25 13 12 40 40 H 1.09000 * 109.48615 * 63.22351 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5109 -4.9343 0.0043 14 6 0.9598 -5.2203 1.3362 15 6 0.1375 -6.5098 1.2789 16 7 0.9922 -7.6128 0.8178 17 6 0.2577 -8.8849 0.8215 18 6 -0.6793 -8.9364 -0.3869 19 9 -1.4958 -7.8005 -0.3926 20 9 0.0777 -8.9724 -1.5628 21 6 -1.5513 -10.1909 -0.3031 22 9 -2.3083 -10.1549 0.8727 23 9 -2.4084 -10.2376 -1.4078 24 6 1.5433 -7.3267 -0.5142 25 6 2.3656 -6.0372 -0.4569 26 1 -0.4850 0.8401 -0.0004 27 1 0.9223 -2.5299 -1.9975 28 1 2.8739 -3.6027 0.8891 29 1 2.8702 -3.6058 -0.8909 30 1 0.3207 -4.3950 1.6502 31 1 1.7753 -5.3405 2.0494 32 1 -0.2484 -6.7396 2.2722 33 1 -0.6943 -6.3803 0.5864 34 1 0.9647 -9.7128 0.7686 35 1 -0.3268 -8.9643 1.7381 36 1 -0.9150 -11.0759 -0.2986 37 1 0.7275 -7.2064 -1.2270 38 1 2.1823 -8.1519 -0.8286 39 1 2.7515 -5.8074 -1.4501 40 1 3.1974 -6.1667 0.2356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929649016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:17 Heat of formation + Delta-G solvation = -247.668242 kcal Electronic energy + Delta-G solvation = -28072.249464 eV Core-core repulsion = 23421.161124 eV Total energy + Delta-G solvation = -4651.088340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.00056 -49.76687 -48.59285 -48.13798 -40.32138 -37.98907 -36.10676 -34.21718 -32.62897 -31.96226 -30.46330 -28.32006 -26.27292 -24.98229 -24.46830 -23.17850 -22.17298 -21.03367 -19.55604 -19.29743 -19.09171 -18.62411 -17.78290 -17.42732 -16.84343 -16.67314 -16.58458 -16.23392 -16.09562 -15.86777 -15.52456 -15.22280 -15.14586 -15.03060 -14.88710 -14.70131 -14.65424 -14.42252 -14.14699 -13.83597 -13.37625 -13.24549 -13.08719 -12.99483 -12.85679 -12.77719 -12.32013 -12.28041 -12.06204 -12.05735 -11.82093 -11.67836 -10.99896 -10.70693 -10.12332 -9.47337 -9.07248 -8.12818 -6.39591 1.40343 1.40889 1.51921 1.71072 2.37998 2.41505 2.71658 2.83262 2.98373 3.03075 3.04721 3.13481 3.69605 3.74382 3.86233 4.04050 4.08425 4.27394 4.29398 4.43802 4.44336 4.51358 4.54693 4.58196 4.69249 4.81351 4.90702 4.92637 5.03242 5.11419 5.59747 5.71929 5.76474 5.77376 6.02582 6.21336 6.30168 6.74549 7.34954 7.62661 8.91691 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.029204 B = 0.003075 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.541671 B = 9102.762150 C = 9359.696098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.589 4.589 8 H 0.060 0.940 9 C 0.240 3.760 10 H 0.015 0.985 11 O -0.571 6.571 12 C 0.051 3.949 13 N -0.545 5.545 14 C 0.062 3.938 15 C 0.044 3.956 16 N -0.523 5.523 17 C 0.020 3.980 18 C 0.200 3.800 19 F -0.199 7.199 20 F -0.180 7.180 21 C 0.236 3.764 22 F -0.188 7.188 23 F -0.205 7.205 24 C 0.049 3.951 25 C 0.055 3.945 26 H 0.261 0.739 27 H 0.351 0.649 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.199 0.801 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -25.264 1.519 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.627 4.627 8 H 0.078 0.922 9 C 0.182 3.818 10 H 0.033 0.967 11 O -0.374 6.374 12 C -0.077 4.077 13 N -0.270 5.270 14 C -0.066 4.066 15 C -0.084 4.084 16 N -0.245 5.245 17 C -0.110 4.110 18 C 0.160 3.840 19 F -0.180 7.180 20 F -0.161 7.161 21 C 0.181 3.819 22 F -0.169 7.169 23 F -0.186 7.186 24 C -0.079 4.079 25 C -0.073 4.073 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.147 0.853 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.590 -25.162 1.971 25.290 hybrid contribution 0.304 1.642 -0.581 1.768 sum 1.894 -23.520 1.390 23.637 Atomic orbital electron populations 1.70240 1.07778 1.27327 1.48447 1.25926 0.95459 1.03002 0.93348 0.85531 0.78695 0.78685 0.78477 1.19756 1.20923 1.18792 1.22067 0.93544 0.92801 1.54285 0.92193 1.19129 0.87761 0.90094 0.84818 0.96687 1.86517 1.38708 1.96477 1.15692 1.22662 0.95623 0.89598 0.99801 1.62069 1.36622 1.02345 1.25920 1.22049 0.98066 0.96863 0.89618 1.22514 0.94683 0.89612 1.01564 1.62366 1.33972 1.02082 1.26037 1.23728 0.96288 0.96017 0.94919 1.23876 0.87844 0.84458 0.87793 1.93019 1.74374 1.53806 1.96795 1.93046 1.76102 1.96200 1.50728 1.23373 0.86000 1.00846 0.71659 1.93047 1.78533 1.97534 1.47815 1.93039 1.73681 1.97521 1.54382 1.22626 0.98819 0.97541 0.88914 1.22242 0.94255 0.90289 1.00471 0.93034 0.80548 0.95439 0.91265 0.92680 0.94352 0.88350 0.93359 0.82724 0.85291 0.78414 0.94112 0.87277 0.90124 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.35 12.84 21.45 0.28 -55.08 16 2 C 0.02 1.42 5.40 84.65 0.46 1.88 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.59 -33.02 8.76 25.60 0.22 -32.79 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.24 12.74 2.88 29.85 0.09 12.83 16 10 H 0.02 0.91 6.88 -2.38 -0.02 0.90 16 11 O -0.57 -31.54 12.60 -148.98 -1.88 -33.42 16 12 C 0.05 2.16 4.60 86.30 0.40 2.56 16 13 N -0.54 -20.36 4.51 -895.72 -4.04 -24.39 16 14 C 0.06 2.18 5.43 86.31 0.47 2.65 16 15 C 0.04 1.23 5.23 86.31 0.45 1.68 16 16 N -0.52 -11.48 4.92 -895.72 -4.40 -15.89 16 17 C 0.02 0.27 5.26 86.30 0.45 0.72 16 18 C 0.20 3.56 1.33 30.59 0.04 3.60 16 19 F -0.20 -5.54 13.54 44.97 0.61 -4.93 16 20 F -0.18 -3.58 13.64 44.97 0.61 -2.96 16 21 C 0.24 2.94 4.83 71.98 0.35 3.29 16 22 F -0.19 -2.86 16.70 44.97 0.75 -2.11 16 23 F -0.21 -4.02 17.30 44.97 0.78 -3.24 16 24 C 0.05 1.17 4.15 86.31 0.36 1.53 16 25 C 0.06 1.61 5.57 86.31 0.48 2.09 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.35 17.33 9.04 -74.06 -0.67 16.66 16 28 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 29 H 0.07 2.78 7.84 -2.38 -0.02 2.76 16 30 H 0.05 2.24 6.80 -2.38 -0.02 2.22 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 2.29 8.02 -2.38 -0.02 2.27 16 33 H 0.05 1.60 5.45 -2.39 -0.01 1.59 16 34 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.13 1.38 7.39 -2.39 -0.02 1.37 16 36 H 0.20 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.04 1.19 5.50 -2.39 -0.01 1.17 16 38 H 0.11 1.99 7.90 -2.39 -0.02 1.97 16 39 H 0.08 2.26 8.00 -2.39 -0.02 2.24 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.96 329.76 -1.09 -75.06 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.41 Total: 20.95 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 3.77 Total: 0.03 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -8.17 Total: -95.36 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.88 Total: -33.42 kcal Atomic # 9 Polarization: -15.99 SS G_CDS: 2.75 Total: -13.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.96 -1.09 -75.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929649016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.613 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds