Wall clock time and date at job start Tue Mar 31 2020 10:22:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39991 * 120.27999 * 2 1
4 4 O 1.35589 * 118.81182 * 0.02562 * 3 2 1
5 5 N 1.31224 * 122.38393 * 180.02562 * 3 2 1
6 6 C 1.33611 * 122.33312 * 359.97265 * 5 3 2
7 7 C 1.40630 * 121.09296 * 180.02562 * 6 5 3
8 8 C 1.36126 * 119.72454 * 179.97438 * 7 6 5
9 9 C 1.39298 * 121.07878 * 0.02838 * 8 7 6
10 10 C 1.36335 * 120.80444 * 359.95126 * 9 8 7
11 11 C 1.39941 * 119.58379 * 0.02639 * 10 9 8
12 12 C 1.38745 * 120.27003 * 180.02562 * 2 1 3
13 13 C 1.47935 * 121.36030 * 359.96255 * 12 2 1
14 14 O 1.21532 * 119.99927 * 89.99905 * 13 12 2
15 15 N 1.34775 * 119.99466 * 269.99495 * 13 12 2
16 16 C 1.46506 * 119.99245 * 180.02562 * 15 13 12
17 17 C 1.53005 * 109.46650 * 180.02562 * 16 15 13
18 18 C 1.53001 * 109.46702 * 179.97438 * 17 16 15
19 19 C 1.50706 * 109.46753 * 179.97438 * 18 17 16
20 20 H 1.07998 * 120.00128 * 0.02562 * 19 18 17
21 21 C 1.37878 * 119.99866 * 180.02562 * 19 18 17
22 22 N 1.31514 * 120.00013 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 119.99938 * 180.02562 * 21 19 18
24 24 H 1.48507 * 109.47391 * 89.99780 * 23 21 19
25 25 H 1.48503 * 109.47181 * 209.99500 * 23 21 19
26 26 H 1.48499 * 109.47277 * 329.99992 * 23 21 19
27 27 H 1.08998 * 109.46778 * 89.99664 * 1 2 3
28 28 H 1.08998 * 109.47897 * 210.00423 * 1 2 3
29 29 H 1.09005 * 109.46763 * 330.00436 * 1 2 3
30 30 H 0.96706 * 113.99520 * 270.02727 * 4 3 2
31 31 H 1.07995 * 120.14074 * 359.97438 * 7 6 5
32 32 H 1.07998 * 119.45981 * 180.02562 * 8 7 6
33 33 H 1.08000 * 119.59570 * 179.97438 * 9 8 7
34 34 H 1.07991 * 120.20849 * 180.02562 * 10 9 8
35 35 H 0.97000 * 120.00451 * 0.02562 * 15 13 12
36 36 H 1.08997 * 109.47058 * 299.99895 * 16 15 13
37 37 H 1.08994 * 109.47025 * 60.00197 * 16 15 13
38 38 H 1.08997 * 109.47060 * 299.99595 * 17 16 15
39 39 H 1.09001 * 109.47195 * 59.99926 * 17 16 15
40 40 H 1.08997 * 109.47140 * 299.99677 * 18 17 16
41 41 H 1.09001 * 109.47249 * 60.00090 * 18 17 16
42 42 H 0.96996 * 120.00003 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2129 1.2089 0.0000
4 8 1.5164 2.3723 0.0005
5 7 3.5243 1.2571 -0.0005
6 6 4.2798 0.1551 -0.0005
7 6 5.6837 0.2372 -0.0005
8 6 6.4265 -0.9036 0.0000
9 6 5.8191 -2.1571 0.0000
10 6 4.4608 -2.2748 0.0004
11 6 3.6675 -1.1220 0.0003
12 6 2.2064 -1.1983 -0.0005
13 6 1.5035 -2.5000 -0.0003
14 8 1.2141 -3.0345 -1.0527
15 7 1.1841 -3.0930 1.1671
16 6 0.4884 -4.3824 1.1673
17 6 0.2464 -4.8310 2.6099
18 6 -0.4807 -6.1772 2.6101
19 6 -0.7185 -6.6193 4.0311
20 1 -0.3849 -6.0017 4.8518
21 6 -1.3621 -7.8124 4.2833
22 7 -1.7687 -8.5642 3.2838
23 14 -1.6575 -8.3601 6.0445
24 1 -2.9681 -7.8405 6.5113
25 1 -1.6626 -9.8437 6.1073
26 1 -0.5770 -7.8314 6.9152
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3635 -0.8899 0.5139
29 1 -0.3633 0.8901 0.5138
30 1 1.3137 2.7097 -0.8828
31 1 6.1706 1.2012 -0.0009
32 1 7.5043 -0.8356 0.0004
33 1 6.4316 -3.0466 0.0000
34 1 4.0000 -3.2515 0.0008
35 1 1.4148 -2.6662 2.0070
36 1 -0.4675 -4.2795 0.6539
37 1 1.0990 -5.1246 0.6532
38 1 1.2022 -4.9337 3.1236
39 1 -0.3643 -4.0885 3.1237
40 1 -1.4365 -6.0740 2.0965
41 1 0.1297 -6.9198 2.0962
42 1 -2.2218 -9.4033 3.4612
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000931969159.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:22:21
Heat of formation + Delta-G solvation = -38.561361 kcal
Electronic energy + Delta-G solvation = -24922.317217 eV
Core-core repulsion = 21252.922397 eV
Total energy + Delta-G solvation = -3669.394820 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.37003 -39.47364 -38.74720 -36.12322 -35.56101 -34.33708 -33.34219 -31.78755
-31.25292 -30.03811 -27.78525 -26.83650 -24.86858 -23.54938 -22.84550 -22.47776
-20.89686 -20.41655 -19.13702 -18.45046 -17.32003 -17.21309 -16.53590 -15.93079
-15.70860 -15.48055 -15.14573 -14.91654 -14.50395 -14.34937 -14.07624 -13.86752
-13.69543 -13.43166 -13.19976 -12.60355 -12.34289 -12.31334 -11.93405 -11.87440
-11.77834 -11.71266 -11.62521 -10.94406 -10.84126 -10.73887 -10.56213 -10.39554
-9.94574 -9.76173 -9.45058 -9.17476 -9.00272 -8.91373 -8.55721 -8.41390
-6.06039 -4.09332 -0.12208 0.39934 1.48839 2.32812 2.41612 3.00347
3.24887 3.28244 3.34943 3.37732 3.66861 4.07672 4.26393 4.31383
4.41253 4.42463 4.64377 4.76537 4.92938 5.02553 5.06074 5.22194
5.29973 5.32974 5.49772 5.57702 5.63761 5.65733 5.67578 5.80629
5.97172 6.03461 6.05777 6.12069 6.26449 6.43785 6.49582 6.69754
6.91026 7.07160 7.43223 7.51245 7.57908 7.69446 7.92087 8.06069
8.33112 8.97211 9.55253 11.05218
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.016789 B = 0.002698 C = 0.002509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1667.401811 B =10373.675133 C =11158.335431
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.112 4.112
3 C 0.351 3.649
4 O -0.477 6.477
5 N -0.487 5.487
6 C 0.144 3.856
7 C -0.092 4.092
8 C -0.098 4.098
9 C -0.109 4.109
10 C -0.091 4.091
11 C -0.080 4.080
12 C -0.054 4.054
13 C 0.561 3.439
14 O -0.524 6.524
15 N -0.713 5.713
16 C 0.114 3.886
17 C -0.121 4.121
18 C 0.025 3.975
19 C -0.523 4.523
20 H 0.055 0.945
21 C 0.057 3.943
22 N -0.894 5.894
23 Si 0.893 3.107
24 H -0.280 1.280
25 H -0.286 1.286
26 H -0.274 1.274
27 H 0.081 0.919
28 H 0.074 0.926
29 H 0.085 0.915
30 H 0.404 0.596
31 H 0.138 0.862
32 H 0.133 0.867
33 H 0.133 0.867
34 H 0.132 0.868
35 H 0.402 0.598
36 H 0.069 0.931
37 H 0.068 0.932
38 H 0.056 0.944
39 H 0.056 0.944
40 H 0.019 0.981
41 H 0.019 0.981
42 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.872 19.969 -8.402 25.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.116 4.116
3 C 0.155 3.845
4 O -0.284 6.284
5 N -0.205 5.205
6 C 0.024 3.976
7 C -0.111 4.111
8 C -0.118 4.118
9 C -0.127 4.127
10 C -0.109 4.109
11 C -0.082 4.082
12 C -0.065 4.065
13 C 0.345 3.655
14 O -0.400 6.400
15 N -0.363 5.363
16 C -0.008 4.008
17 C -0.159 4.159
18 C -0.013 4.013
19 C -0.562 4.562
20 H 0.074 0.926
21 C -0.144 4.144
22 N -0.533 5.533
23 Si 0.721 3.279
24 H -0.206 1.206
25 H -0.212 1.212
26 H -0.199 1.199
27 H 0.100 0.900
28 H 0.093 0.907
29 H 0.104 0.896
30 H 0.262 0.738
31 H 0.156 0.844
32 H 0.151 0.849
33 H 0.151 0.849
34 H 0.150 0.850
35 H 0.236 0.764
36 H 0.087 0.913
37 H 0.087 0.913
38 H 0.074 0.926
39 H 0.074 0.926
40 H 0.038 0.962
41 H 0.038 0.962
42 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 13.057 20.111 -8.595 25.472
hybrid contribution -0.565 -0.817 0.861 1.315
sum 12.492 19.293 -7.734 24.251
Atomic orbital electron populations
1.20807 0.88689 1.04348 1.03558 1.21040 0.98248 0.91325 1.00963
1.18850 0.86242 0.84995 0.94398 1.84738 1.72427 1.37155 1.34119
1.66981 1.06637 1.32680 1.14247 1.18350 0.93735 0.86271 0.99258
1.20800 0.90567 0.99684 1.00028 1.20954 1.00557 0.91929 0.98329
1.21019 0.94570 0.98134 0.99010 1.20944 0.94046 0.97504 0.98440
1.19570 0.91360 0.94889 1.02412 1.21342 0.92420 0.93749 0.98971
1.17904 0.79069 0.83744 0.84796 1.90847 1.53703 1.64300 1.31136
1.46287 1.58855 1.23427 1.07743 1.21780 0.96537 0.82208 1.00225
1.21913 1.01067 1.01001 0.91966 1.19026 0.95313 0.89530 0.97430
1.21192 1.37688 1.05029 0.92267 0.92625 1.25024 0.95636 0.96639
0.97116 1.69959 1.39518 1.13076 1.30699 0.86580 0.78619 0.77789
0.84930 1.20632 1.21182 1.19866 0.90027 0.90667 0.89589 0.73800
0.84374 0.84885 0.84946 0.85045 0.76372 0.91307 0.91336 0.92574
0.92567 0.96232 0.96234 0.92883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.14 9.43 36.01 0.34 -0.80 16
2 C -0.11 -1.28 5.95 -103.78 -0.62 -1.90 16
3 C 0.35 3.96 7.67 -17.15 -0.13 3.83 16
4 O -0.48 -4.20 12.55 -18.46 -0.23 -4.43 16
5 N -0.49 -6.06 10.28 -11.13 -0.11 -6.17 16
6 C 0.14 1.73 6.62 -84.89 -0.56 1.17 16
7 C -0.09 -0.88 9.99 -39.44 -0.39 -1.27 16
8 C -0.10 -0.78 9.94 -39.95 -0.40 -1.17 16
9 C -0.11 -0.97 9.96 -39.87 -0.40 -1.37 16
10 C -0.09 -1.02 9.48 -39.63 -0.38 -1.39 16
11 C -0.08 -1.00 5.90 -104.72 -0.62 -1.61 16
12 C -0.05 -0.70 5.84 -102.50 -0.60 -1.30 16
13 C 0.56 8.25 4.85 -12.29 -0.06 8.19 16
14 O -0.52 -9.53 17.10 5.34 0.09 -9.44 16
15 N -0.71 -9.85 5.55 -61.22 -0.34 -10.19 16
16 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16
17 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16
18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
19 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16
20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16
21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16
22 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16
23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16
24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16
29 H 0.09 0.71 7.51 -51.93 -0.39 0.32 16
30 H 0.40 1.54 9.06 45.56 0.41 1.95 16
31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16
32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16
34 H 0.13 1.52 7.35 -52.49 -0.39 1.14 16
35 H 0.40 4.74 8.46 -40.82 -0.35 4.39 16
36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
LS Contribution 362.50 15.07 5.46 5.46
Total: -1.00 -34.01 362.50 -8.79 -42.80
By element:
Atomic # 1 Polarization: 7.14 SS G_CDS: -4.85 Total: 2.29 kcal
Atomic # 6 Polarization: -6.31 SS G_CDS: -4.52 Total: -10.84 kcal
Atomic # 7 Polarization: -42.32 SS G_CDS: 0.28 Total: -42.04 kcal
Atomic # 8 Polarization: -13.73 SS G_CDS: -0.14 Total: -13.87 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -34.01 -8.79 -42.80 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931969159.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal
(2) G-P(sol) polarization free energy of solvation -34.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds