Wall clock time and date at job start Tue Mar 31 2020 10:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39991 * 120.27999 * 2 1 4 4 O 1.35589 * 118.81182 * 0.02562 * 3 2 1 5 5 N 1.31224 * 122.38393 * 180.02562 * 3 2 1 6 6 C 1.33611 * 122.33312 * 359.97265 * 5 3 2 7 7 C 1.40630 * 121.09296 * 180.02562 * 6 5 3 8 8 C 1.36126 * 119.72454 * 179.97438 * 7 6 5 9 9 C 1.39298 * 121.07878 * 0.02838 * 8 7 6 10 10 C 1.36335 * 120.80444 * 359.95126 * 9 8 7 11 11 C 1.39941 * 119.58379 * 0.02639 * 10 9 8 12 12 C 1.38745 * 120.27003 * 180.02562 * 2 1 3 13 13 C 1.47935 * 121.36030 * 359.96255 * 12 2 1 14 14 O 1.21532 * 119.99927 * 89.99905 * 13 12 2 15 15 N 1.34775 * 119.99466 * 269.99495 * 13 12 2 16 16 C 1.46506 * 119.99245 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46650 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46702 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46753 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00128 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99866 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00013 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47391 * 89.99780 * 23 21 19 25 25 H 1.48503 * 109.47181 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47277 * 329.99992 * 23 21 19 27 27 H 1.08998 * 109.46778 * 89.99664 * 1 2 3 28 28 H 1.08998 * 109.47897 * 210.00423 * 1 2 3 29 29 H 1.09005 * 109.46763 * 330.00436 * 1 2 3 30 30 H 0.96706 * 113.99520 * 270.02727 * 4 3 2 31 31 H 1.07995 * 120.14074 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.45981 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.59570 * 179.97438 * 9 8 7 34 34 H 1.07991 * 120.20849 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00451 * 0.02562 * 15 13 12 36 36 H 1.08997 * 109.47058 * 299.99895 * 16 15 13 37 37 H 1.08994 * 109.47025 * 60.00197 * 16 15 13 38 38 H 1.08997 * 109.47060 * 299.99595 * 17 16 15 39 39 H 1.09001 * 109.47195 * 59.99926 * 17 16 15 40 40 H 1.08997 * 109.47140 * 299.99677 * 18 17 16 41 41 H 1.09001 * 109.47249 * 60.00090 * 18 17 16 42 42 H 0.96996 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2129 1.2089 0.0000 4 8 1.5164 2.3723 0.0005 5 7 3.5243 1.2571 -0.0005 6 6 4.2798 0.1551 -0.0005 7 6 5.6837 0.2372 -0.0005 8 6 6.4265 -0.9036 0.0000 9 6 5.8191 -2.1571 0.0000 10 6 4.4608 -2.2748 0.0004 11 6 3.6675 -1.1220 0.0003 12 6 2.2064 -1.1983 -0.0005 13 6 1.5035 -2.5000 -0.0003 14 8 1.2141 -3.0345 -1.0527 15 7 1.1841 -3.0930 1.1671 16 6 0.4884 -4.3824 1.1673 17 6 0.2464 -4.8310 2.6099 18 6 -0.4807 -6.1772 2.6101 19 6 -0.7185 -6.6193 4.0311 20 1 -0.3849 -6.0017 4.8518 21 6 -1.3621 -7.8124 4.2833 22 7 -1.7687 -8.5642 3.2838 23 14 -1.6575 -8.3601 6.0445 24 1 -2.9681 -7.8405 6.5113 25 1 -1.6626 -9.8437 6.1073 26 1 -0.5770 -7.8314 6.9152 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3635 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.3137 2.7097 -0.8828 31 1 6.1706 1.2012 -0.0009 32 1 7.5043 -0.8356 0.0004 33 1 6.4316 -3.0466 0.0000 34 1 4.0000 -3.2515 0.0008 35 1 1.4148 -2.6662 2.0070 36 1 -0.4675 -4.2795 0.6539 37 1 1.0990 -5.1246 0.6532 38 1 1.2022 -4.9337 3.1236 39 1 -0.3643 -4.0885 3.1237 40 1 -1.4365 -6.0740 2.0965 41 1 0.1297 -6.9198 2.0962 42 1 -2.2218 -9.4033 3.4612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931969159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:21 Heat of formation + Delta-G solvation = -38.561361 kcal Electronic energy + Delta-G solvation = -24922.317217 eV Core-core repulsion = 21252.922397 eV Total energy + Delta-G solvation = -3669.394820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37003 -39.47364 -38.74720 -36.12322 -35.56101 -34.33708 -33.34219 -31.78755 -31.25292 -30.03811 -27.78525 -26.83650 -24.86858 -23.54938 -22.84550 -22.47776 -20.89686 -20.41655 -19.13702 -18.45046 -17.32003 -17.21309 -16.53590 -15.93079 -15.70860 -15.48055 -15.14573 -14.91654 -14.50395 -14.34937 -14.07624 -13.86752 -13.69543 -13.43166 -13.19976 -12.60355 -12.34289 -12.31334 -11.93405 -11.87440 -11.77834 -11.71266 -11.62521 -10.94406 -10.84126 -10.73887 -10.56213 -10.39554 -9.94574 -9.76173 -9.45058 -9.17476 -9.00272 -8.91373 -8.55721 -8.41390 -6.06039 -4.09332 -0.12208 0.39934 1.48839 2.32812 2.41612 3.00347 3.24887 3.28244 3.34943 3.37732 3.66861 4.07672 4.26393 4.31383 4.41253 4.42463 4.64377 4.76537 4.92938 5.02553 5.06074 5.22194 5.29973 5.32974 5.49772 5.57702 5.63761 5.65733 5.67578 5.80629 5.97172 6.03461 6.05777 6.12069 6.26449 6.43785 6.49582 6.69754 6.91026 7.07160 7.43223 7.51245 7.57908 7.69446 7.92087 8.06069 8.33112 8.97211 9.55253 11.05218 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.002698 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.401811 B =10373.675133 C =11158.335431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 C 0.351 3.649 4 O -0.477 6.477 5 N -0.487 5.487 6 C 0.144 3.856 7 C -0.092 4.092 8 C -0.098 4.098 9 C -0.109 4.109 10 C -0.091 4.091 11 C -0.080 4.080 12 C -0.054 4.054 13 C 0.561 3.439 14 O -0.524 6.524 15 N -0.713 5.713 16 C 0.114 3.886 17 C -0.121 4.121 18 C 0.025 3.975 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.404 0.596 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 19.969 -8.402 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.116 4.116 3 C 0.155 3.845 4 O -0.284 6.284 5 N -0.205 5.205 6 C 0.024 3.976 7 C -0.111 4.111 8 C -0.118 4.118 9 C -0.127 4.127 10 C -0.109 4.109 11 C -0.082 4.082 12 C -0.065 4.065 13 C 0.345 3.655 14 O -0.400 6.400 15 N -0.363 5.363 16 C -0.008 4.008 17 C -0.159 4.159 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.262 0.738 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.057 20.111 -8.595 25.472 hybrid contribution -0.565 -0.817 0.861 1.315 sum 12.492 19.293 -7.734 24.251 Atomic orbital electron populations 1.20807 0.88689 1.04348 1.03558 1.21040 0.98248 0.91325 1.00963 1.18850 0.86242 0.84995 0.94398 1.84738 1.72427 1.37155 1.34119 1.66981 1.06637 1.32680 1.14247 1.18350 0.93735 0.86271 0.99258 1.20800 0.90567 0.99684 1.00028 1.20954 1.00557 0.91929 0.98329 1.21019 0.94570 0.98134 0.99010 1.20944 0.94046 0.97504 0.98440 1.19570 0.91360 0.94889 1.02412 1.21342 0.92420 0.93749 0.98971 1.17904 0.79069 0.83744 0.84796 1.90847 1.53703 1.64300 1.31136 1.46287 1.58855 1.23427 1.07743 1.21780 0.96537 0.82208 1.00225 1.21913 1.01067 1.01001 0.91966 1.19026 0.95313 0.89530 0.97430 1.21192 1.37688 1.05029 0.92267 0.92625 1.25024 0.95636 0.96639 0.97116 1.69959 1.39518 1.13076 1.30699 0.86580 0.78619 0.77789 0.84930 1.20632 1.21182 1.19866 0.90027 0.90667 0.89589 0.73800 0.84374 0.84885 0.84946 0.85045 0.76372 0.91307 0.91336 0.92574 0.92567 0.96232 0.96234 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.43 36.01 0.34 -0.80 16 2 C -0.11 -1.28 5.95 -103.78 -0.62 -1.90 16 3 C 0.35 3.96 7.67 -17.15 -0.13 3.83 16 4 O -0.48 -4.20 12.55 -18.46 -0.23 -4.43 16 5 N -0.49 -6.06 10.28 -11.13 -0.11 -6.17 16 6 C 0.14 1.73 6.62 -84.89 -0.56 1.17 16 7 C -0.09 -0.88 9.99 -39.44 -0.39 -1.27 16 8 C -0.10 -0.78 9.94 -39.95 -0.40 -1.17 16 9 C -0.11 -0.97 9.96 -39.87 -0.40 -1.37 16 10 C -0.09 -1.02 9.48 -39.63 -0.38 -1.39 16 11 C -0.08 -1.00 5.90 -104.72 -0.62 -1.61 16 12 C -0.05 -0.70 5.84 -102.50 -0.60 -1.30 16 13 C 0.56 8.25 4.85 -12.29 -0.06 8.19 16 14 O -0.52 -9.53 17.10 5.34 0.09 -9.44 16 15 N -0.71 -9.85 5.55 -61.22 -0.34 -10.19 16 16 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 17 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16 29 H 0.09 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.40 1.54 9.06 45.56 0.41 1.95 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.13 1.52 7.35 -52.49 -0.39 1.14 16 35 H 0.40 4.74 8.46 -40.82 -0.35 4.39 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -34.01 362.50 -8.79 -42.80 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.85 Total: 2.29 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -4.52 Total: -10.84 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.28 Total: -42.04 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.14 Total: -13.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.01 -8.79 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds