Wall clock time and date at job start Tue Mar 31 2020 10:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39991 * 120.27999 * 2 1 4 4 O 1.35589 * 118.81182 * 0.02562 * 3 2 1 5 5 N 1.31224 * 122.38393 * 180.02562 * 3 2 1 6 6 C 1.33611 * 122.33312 * 359.97265 * 5 3 2 7 7 C 1.40630 * 121.09296 * 180.02562 * 6 5 3 8 8 C 1.36126 * 119.72454 * 179.97438 * 7 6 5 9 9 C 1.39298 * 121.07878 * 0.02838 * 8 7 6 10 10 C 1.36335 * 120.80444 * 359.95126 * 9 8 7 11 11 C 1.39941 * 119.58379 * 0.02639 * 10 9 8 12 12 C 1.38745 * 120.27003 * 180.02562 * 2 1 3 13 13 C 1.47935 * 121.36030 * 359.96255 * 12 2 1 14 14 O 1.21532 * 119.99927 * 89.99905 * 13 12 2 15 15 N 1.34775 * 119.99466 * 269.99495 * 13 12 2 16 16 C 1.46506 * 119.99245 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46650 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46702 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46753 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00128 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99866 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00013 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47391 * 89.99780 * 23 21 19 25 25 H 1.48503 * 109.47181 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47277 * 329.99992 * 23 21 19 27 27 H 1.08998 * 109.46778 * 89.99664 * 1 2 3 28 28 H 1.08998 * 109.47897 * 210.00423 * 1 2 3 29 29 H 1.09005 * 109.46763 * 330.00436 * 1 2 3 30 30 H 0.96706 * 113.99520 * 270.02727 * 4 3 2 31 31 H 1.07995 * 120.14074 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.45981 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.59570 * 179.97438 * 9 8 7 34 34 H 1.07991 * 120.20849 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00451 * 0.02562 * 15 13 12 36 36 H 1.08997 * 109.47058 * 299.99895 * 16 15 13 37 37 H 1.08994 * 109.47025 * 60.00197 * 16 15 13 38 38 H 1.08997 * 109.47060 * 299.99595 * 17 16 15 39 39 H 1.09001 * 109.47195 * 59.99926 * 17 16 15 40 40 H 1.08997 * 109.47140 * 299.99677 * 18 17 16 41 41 H 1.09001 * 109.47249 * 60.00090 * 18 17 16 42 42 H 0.96996 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2129 1.2089 0.0000 4 8 1.5164 2.3723 0.0005 5 7 3.5243 1.2571 -0.0005 6 6 4.2798 0.1551 -0.0005 7 6 5.6837 0.2372 -0.0005 8 6 6.4265 -0.9036 0.0000 9 6 5.8191 -2.1571 0.0000 10 6 4.4608 -2.2748 0.0004 11 6 3.6675 -1.1220 0.0003 12 6 2.2064 -1.1983 -0.0005 13 6 1.5035 -2.5000 -0.0003 14 8 1.2141 -3.0345 -1.0527 15 7 1.1841 -3.0930 1.1671 16 6 0.4884 -4.3824 1.1673 17 6 0.2464 -4.8310 2.6099 18 6 -0.4807 -6.1772 2.6101 19 6 -0.7185 -6.6193 4.0311 20 1 -0.3849 -6.0017 4.8518 21 6 -1.3621 -7.8124 4.2833 22 7 -1.7687 -8.5642 3.2838 23 14 -1.6575 -8.3601 6.0445 24 1 -2.9681 -7.8405 6.5113 25 1 -1.6626 -9.8437 6.1073 26 1 -0.5770 -7.8314 6.9152 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3635 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.3137 2.7097 -0.8828 31 1 6.1706 1.2012 -0.0009 32 1 7.5043 -0.8356 0.0004 33 1 6.4316 -3.0466 0.0000 34 1 4.0000 -3.2515 0.0008 35 1 1.4148 -2.6662 2.0070 36 1 -0.4675 -4.2795 0.6539 37 1 1.0990 -5.1246 0.6532 38 1 1.2022 -4.9337 3.1236 39 1 -0.3643 -4.0885 3.1237 40 1 -1.4365 -6.0740 2.0965 41 1 0.1297 -6.9198 2.0962 42 1 -2.2218 -9.4033 3.4612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931969159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:20 Heat of formation + Delta-G solvation = -63.929478 kcal Electronic energy + Delta-G solvation = -24923.417262 eV Core-core repulsion = 21252.922397 eV Total energy + Delta-G solvation = -3670.494864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24349 -40.63779 -39.47686 -37.10450 -36.83260 -35.37794 -35.07333 -33.02939 -32.51826 -30.84647 -29.02211 -28.15616 -26.06662 -24.79307 -23.90903 -23.40659 -22.38573 -21.60447 -20.11267 -19.25309 -18.57783 -18.19176 -18.08135 -17.18396 -16.66941 -16.66384 -16.46047 -16.16322 -15.65772 -15.33167 -15.12999 -14.92718 -14.78135 -14.28008 -14.19848 -14.08538 -13.79376 -13.53305 -13.34463 -13.02101 -12.76788 -12.58727 -12.55629 -12.43573 -12.41737 -12.37552 -11.87057 -11.71054 -11.41083 -11.36579 -11.19548 -10.59463 -10.55744 -10.30314 -9.69113 -9.35721 -8.20202 -6.31345 -0.95965 -0.39410 0.66925 1.18658 1.41718 1.42463 1.53481 1.64165 1.88429 2.41483 2.46551 2.86997 3.13882 3.26138 3.30244 3.44376 3.65134 3.86305 4.03495 4.10358 4.16551 4.22787 4.26714 4.30102 4.44492 4.51303 4.57602 4.78850 4.84809 4.89202 4.90975 4.92697 5.05247 5.14191 5.25123 5.26078 5.30845 5.40043 5.50768 5.69576 5.75449 5.83576 6.20571 6.27534 6.47295 6.72685 6.85955 6.89998 7.38309 8.91792 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.002698 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.401811 B =10373.675133 C =11158.335431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C 0.350 3.650 4 O -0.478 6.478 5 N -0.499 5.499 6 C 0.123 3.877 7 C -0.097 4.097 8 C -0.088 4.088 9 C -0.098 4.098 10 C -0.117 4.117 11 C -0.093 4.093 12 C -0.074 4.074 13 C 0.571 3.429 14 O -0.564 6.564 15 N -0.701 5.701 16 C 0.129 3.871 17 C -0.103 4.103 18 C 0.025 3.975 19 C -0.541 4.541 20 H 0.065 0.935 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.261 1.261 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.425 0.575 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.068 0.932 40 H -0.006 1.006 41 H -0.006 1.006 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.549 21.619 -7.194 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C 0.153 3.847 4 O -0.288 6.288 5 N -0.218 5.218 6 C 0.004 3.996 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.115 4.115 10 C -0.136 4.136 11 C -0.095 4.095 12 C -0.085 4.085 13 C 0.357 3.643 14 O -0.443 6.443 15 N -0.351 5.351 16 C 0.006 3.994 17 C -0.141 4.141 18 C -0.013 4.013 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.185 1.185 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.287 0.713 31 H 0.173 0.827 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.743 21.801 -7.375 27.332 hybrid contribution -1.026 -1.284 0.433 1.700 sum 13.717 20.517 -6.942 25.638 Atomic orbital electron populations 1.20839 0.87643 1.04516 1.04124 1.21215 0.98979 0.91046 0.99973 1.18887 0.86151 0.85504 0.94125 1.84697 1.71983 1.36103 1.36052 1.67042 1.07129 1.32977 1.14612 1.18710 0.94910 0.85932 1.00051 1.21118 0.89597 1.01200 0.99635 1.21364 1.02331 0.90759 0.96221 1.21396 0.93764 0.99762 0.96627 1.20982 0.95284 0.96679 1.00683 1.19697 0.91120 0.95668 1.03057 1.21178 0.93001 0.92956 1.01390 1.18096 0.78134 0.84067 0.84020 1.90818 1.55381 1.65580 1.32497 1.46039 1.58271 1.22402 1.08414 1.21393 0.96232 0.83246 0.98573 1.21615 1.00967 0.98029 0.93467 1.18927 0.94344 0.92098 0.95890 1.21674 1.37354 1.05324 0.93580 0.91688 1.25985 0.95407 0.96862 1.01684 1.70099 1.40522 1.13612 1.33189 0.85449 0.78934 0.77209 0.79469 1.19869 1.21021 1.18516 0.89224 0.91950 0.87838 0.71327 0.82653 0.81115 0.82425 0.86311 0.74908 0.92259 0.92347 0.91420 0.91354 0.98724 0.98733 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.43 71.24 0.67 -1.47 16 2 C -0.11 -2.44 5.95 -19.32 -0.12 -2.55 16 3 C 0.35 7.55 7.67 85.21 0.65 8.20 16 4 O -0.48 -7.62 12.55 -88.98 -1.12 -8.74 16 5 N -0.50 -11.91 10.28 -302.56 -3.11 -15.02 16 6 C 0.12 2.86 6.62 40.30 0.27 3.13 16 7 C -0.10 -1.63 9.99 22.36 0.22 -1.41 16 8 C -0.09 -1.12 9.94 22.03 0.22 -0.90 16 9 C -0.10 -1.52 9.96 22.08 0.22 -1.30 16 10 C -0.12 -2.61 9.48 22.24 0.21 -2.39 16 11 C -0.09 -2.31 5.90 -19.93 -0.12 -2.42 16 12 C -0.07 -1.95 5.84 -18.49 -0.11 -2.06 16 13 C 0.57 17.22 4.85 86.81 0.42 17.64 16 14 O -0.56 -21.31 17.10 -3.82 -0.07 -21.38 16 15 N -0.70 -19.52 5.55 -465.89 -2.59 -22.11 16 16 C 0.13 4.34 5.67 86.38 0.49 4.83 16 17 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 18 C 0.03 1.27 4.97 29.85 0.15 1.42 16 19 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 23 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.33 7.16 -2.39 -0.02 1.32 16 29 H 0.10 1.55 7.51 -2.38 -0.02 1.53 16 30 H 0.42 2.44 9.06 -74.05 -0.67 1.77 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.12 2.85 7.35 -2.92 -0.02 2.83 16 35 H 0.41 9.57 8.46 -92.71 -0.78 8.79 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -74.71 362.50 -0.92 -75.62 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.39 Total: 14.41 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.04 Total: -12.13 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -5.41 Total: -93.20 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.18 Total: -30.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.71 -0.92 -75.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.695 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds