Wall clock time and date at job start Tue Mar 31 2020 10:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36665 * 120.14305 * 2 1 4 4 C 1.38789 * 120.43959 * 179.97438 * 3 2 1 5 5 C 1.37836 * 120.75099 * 0.02562 * 4 3 2 6 6 C 1.38987 * 119.85221 * 0.02562 * 5 4 3 7 7 O 1.34721 * 133.25427 * 180.02562 * 6 5 4 8 8 C 1.34946 * 110.86355 * 179.97438 * 7 6 5 9 9 C 1.46980 * 125.12618 * 179.97438 * 8 7 6 10 10 O 1.21654 * 120.00422 * 187.96432 * 9 8 7 11 11 N 1.34781 * 119.99862 * 7.96709 * 9 8 7 12 12 C 1.46964 * 120.59252 * 186.34162 * 11 9 8 13 13 C 1.53379 * 108.63283 * 235.19994 * 12 11 9 14 14 N 1.46967 * 108.63530 * 310.57603 * 13 12 11 15 15 C 1.36927 * 120.59193 * 235.20368 * 14 13 12 16 16 H 1.07994 * 120.00699 * 32.79945 * 15 14 13 17 17 C 1.38818 * 119.99474 * 213.07538 * 15 14 13 18 18 N 1.31618 * 120.00250 * 21.26282 * 17 15 14 19 19 Si 1.86808 * 119.99662 * 201.26763 * 17 15 14 20 20 H 1.48499 * 109.47033 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47214 * 120.00056 * 19 17 15 22 22 H 1.48500 * 109.46812 * 240.00079 * 19 17 15 23 23 C 1.46967 * 118.80801 * 55.47495 * 14 13 12 24 24 C 1.46965 * 120.59319 * 6.31011 * 11 9 8 25 25 C 1.35806 * 109.74954 * 0.26157 * 8 7 6 26 26 C 1.39665 * 120.14834 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47102 * 89.99752 * 1 2 3 28 28 H 1.09006 * 109.47306 * 210.00073 * 1 2 3 29 29 H 1.08999 * 109.47513 * 329.99617 * 1 2 3 30 30 H 1.07999 * 119.78060 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.62523 * 179.97438 * 4 3 2 32 32 H 1.07991 * 120.07615 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.61452 * 115.45941 * 12 11 9 34 34 H 1.08997 * 109.60962 * 354.94445 * 12 11 9 35 35 H 1.08993 * 109.60944 * 190.83307 * 13 12 11 36 36 H 1.08997 * 109.60706 * 70.32081 * 13 12 11 37 37 H 0.97000 * 119.99683 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.61133 * 64.26870 * 23 14 13 39 39 H 1.09006 * 109.60652 * 184.77675 * 23 14 13 40 40 H 1.08997 * 109.61406 * 244.54217 * 24 11 9 41 41 H 1.09003 * 109.61021 * 5.05952 * 24 11 9 42 42 H 1.07993 * 126.95944 * 179.70448 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1818 0.0000 4 6 3.5811 1.1890 0.0005 5 6 4.2920 0.0081 0.0005 6 6 3.6160 -1.2063 -0.0005 7 8 4.0244 -2.4901 -0.0004 8 6 2.9685 -3.3303 -0.0012 9 6 3.0552 -4.7976 -0.0018 10 8 2.0496 -5.4664 -0.1486 11 7 4.2488 -5.4021 0.1602 12 6 4.3734 -6.8601 0.0239 13 6 5.0037 -7.4201 1.3052 14 7 6.2041 -6.6330 1.6208 15 6 7.4168 -7.2472 1.7854 16 1 7.6554 -8.1329 1.2153 17 6 8.3373 -6.7348 2.6893 18 7 7.9335 -5.9525 3.6677 19 14 10.1492 -7.1554 2.5169 20 1 10.3411 -8.0462 1.3443 21 1 10.9309 -5.9077 2.3245 22 1 10.6157 -7.8474 3.7452 23 6 6.0783 -5.1756 1.7625 24 6 5.4492 -4.6151 0.4757 25 6 1.8135 -2.6159 -0.0078 26 6 2.2084 -1.2077 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6520 2.1164 -0.0004 31 1 4.1101 2.1306 0.0001 32 1 5.3717 0.0264 0.0005 33 1 5.0097 -7.0948 -0.8295 34 1 3.3866 -7.2997 -0.1207 35 1 5.2802 -8.4630 1.1513 36 1 4.2909 -7.3453 2.1264 37 1 8.5768 -5.5941 4.2991 38 1 5.4403 -4.9447 2.6155 39 1 7.0648 -4.7360 1.9108 40 1 6.1620 -4.6898 -0.3454 41 1 5.1727 -3.5720 0.6297 42 1 0.8074 -3.0082 -0.0145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933237423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:00 Heat of formation + Delta-G solvation = 32.690847 kcal Electronic energy + Delta-G solvation = -26010.621881 eV Core-core repulsion = 22344.316788 eV Total energy + Delta-G solvation = -3666.305093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -42.59785 -39.56674 -38.21420 -36.92398 -33.96900 -33.46915 -31.73485 -31.50368 -30.41810 -29.70561 -27.33312 -26.78537 -24.44402 -23.43028 -22.73990 -22.54995 -20.89607 -20.59605 -19.23980 -17.95354 -17.24245 -16.49374 -16.37408 -16.01703 -15.66221 -14.84573 -14.74792 -14.64255 -14.15867 -13.84237 -13.78900 -13.69364 -13.45111 -13.36106 -13.15800 -12.96248 -12.51616 -12.50094 -11.95715 -11.88937 -11.54329 -11.37527 -11.09213 -10.83970 -10.79883 -10.52251 -10.32967 -10.20607 -10.13884 -9.95277 -9.69925 -8.76290 -8.63283 -8.43331 -8.16421 -6.71985 -5.90402 -3.36600 0.51370 1.21039 1.82348 2.44775 3.21476 3.30980 3.35536 3.40532 3.43044 3.51714 4.29569 4.42391 4.43529 4.64605 4.91610 4.94386 5.01814 5.14442 5.23349 5.27269 5.35912 5.38503 5.50422 5.55422 5.74768 5.78808 5.81533 5.87358 5.95626 6.07391 6.12954 6.18323 6.22939 6.32431 6.32833 6.44389 6.47538 6.74365 6.85628 6.98785 7.11126 7.29425 7.67628 7.74739 8.24256 8.34101 9.07008 9.69748 10.30337 11.16861 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.003577 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.002073 B = 7826.471652 C = 9003.119666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.114 4.114 6 C 0.063 3.937 7 O -0.170 6.170 8 C -0.009 4.009 9 C 0.587 3.413 10 O -0.535 6.535 11 N -0.580 5.580 12 C 0.095 3.905 13 C 0.131 3.869 14 N -0.589 5.589 15 C -0.265 4.265 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.164 3.836 24 C 0.067 3.933 25 C -0.123 4.123 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.255 0.745 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 13.886 -8.201 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.163 4.163 4 C -0.102 4.102 5 C -0.133 4.133 6 C 0.015 3.985 7 O -0.072 6.072 8 C -0.059 4.059 9 C 0.374 3.626 10 O -0.415 6.415 11 N -0.310 5.310 12 C -0.029 4.029 13 C 0.004 3.996 14 N -0.312 5.312 15 C -0.394 4.394 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.216 1.216 23 C 0.037 3.963 24 C -0.056 4.056 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.054 13.458 -8.127 19.219 hybrid contribution 1.035 -0.041 0.117 1.043 sum -10.019 13.417 -8.011 18.562 Atomic orbital electron populations 1.20814 0.90710 1.03156 1.02653 1.19141 0.96076 0.90750 0.97059 1.20644 0.94193 0.97362 1.04086 1.20945 0.93994 0.97074 0.98205 1.20017 1.00475 0.87666 1.05102 1.19992 0.92821 0.84759 1.00900 1.84408 1.33245 1.13726 1.75808 1.22154 0.85595 0.90857 1.07247 1.16891 0.84125 0.83313 0.78296 1.90819 1.35095 1.62890 1.52655 1.48016 1.07845 1.08927 1.66233 1.22373 1.01626 0.78278 1.00587 1.21324 0.89752 0.95578 0.92964 1.43998 1.03854 1.01057 1.82276 1.19153 0.90812 1.12019 1.17437 0.91572 1.25167 0.99314 1.00053 0.94426 1.70102 1.33146 1.36501 1.13759 0.86286 0.85351 0.77839 0.77648 1.20044 1.21380 1.21627 1.21148 0.99954 0.84510 0.90689 1.23282 0.85845 0.95159 1.01268 1.22602 0.98920 0.90078 1.02770 1.19749 0.93052 0.93431 1.07899 0.90753 0.91149 0.91168 0.85377 0.84717 0.84693 0.91321 0.89629 0.91165 0.95683 0.93498 0.95562 0.89325 0.91350 0.88641 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.95 36.00 0.36 -0.58 16 2 C -0.03 -0.32 5.88 -104.66 -0.62 -0.94 16 3 C -0.14 -1.33 9.63 -39.95 -0.38 -1.72 16 4 C -0.08 -0.77 10.01 -39.52 -0.40 -1.17 16 5 C -0.11 -1.30 10.07 -39.45 -0.40 -1.70 16 6 C 0.06 0.89 7.41 -38.35 -0.28 0.61 16 7 O -0.17 -2.72 7.06 2.76 0.02 -2.70 16 8 C -0.01 -0.15 6.74 -36.91 -0.25 -0.40 16 9 C 0.59 10.90 7.66 -12.72 -0.10 10.80 16 10 O -0.53 -10.73 16.25 5.23 0.08 -10.65 16 11 N -0.58 -10.98 2.95 -173.64 -0.51 -11.49 16 12 C 0.09 1.74 6.60 -3.59 -0.02 1.72 16 13 C 0.13 2.75 6.67 -3.59 -0.02 2.72 16 14 N -0.59 -14.45 2.93 -171.76 -0.50 -14.95 16 15 C -0.26 -7.05 9.49 -15.06 -0.14 -7.19 16 16 H 0.07 1.73 7.92 -52.49 -0.42 1.32 16 17 C 0.01 0.29 4.76 -17.43 -0.08 0.21 16 18 N -0.89 -25.35 11.82 55.49 0.66 -24.69 16 19 Si 0.90 20.99 29.61 -169.99 -5.03 15.96 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 C 0.16 3.79 5.55 -3.36 -0.02 3.77 16 24 C 0.07 1.29 6.32 -3.37 -0.02 1.27 16 25 C -0.12 -1.78 10.53 -37.23 -0.39 -2.17 16 26 C -0.14 -1.89 6.15 -105.19 -0.65 -2.54 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.49 6.99 -51.93 -0.36 1.13 16 35 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 2.23 6.48 -51.93 -0.34 1.89 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.71 4.08 -54.04 -0.22 1.49 16 42 H 0.17 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -31.09 345.99 -9.01 -40.10 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.52 Total: 0.50 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.42 Total: 2.70 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.36 Total: -51.13 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.10 Total: -13.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.09 -9.01 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933237423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.791 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds