Wall clock time and date at job start Tue Mar 31 2020 10:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33817 * 125.07283 * 2 1 4 4 C 1.34911 * 111.34829 * 179.97438 * 3 2 1 5 5 C 1.38965 * 133.11687 * 179.97438 * 4 3 2 6 6 C 1.37845 * 119.97415 * 180.02562 * 5 4 3 7 7 C 1.38679 * 120.65690 * 0.02562 * 6 5 4 8 8 C 1.37851 * 120.19737 * 0.02562 * 7 6 5 9 9 C 1.39104 * 119.63061 * 359.97317 * 8 7 6 10 10 C 1.36052 * 125.07665 * 179.97438 * 2 1 3 11 11 C 1.47079 * 127.13966 * 359.97438 * 10 2 1 12 12 O 1.21647 * 119.99931 * 270.04335 * 11 10 2 13 13 N 1.34779 * 120.00156 * 90.04465 * 11 10 2 14 14 C 1.46492 * 120.00314 * 180.02562 * 13 11 10 15 15 H 1.09007 * 110.88596 * 328.87496 * 14 13 11 16 16 C 1.55153 * 111.00619 * 204.99919 * 14 13 11 17 17 C 1.54328 * 102.94423 * 277.42548 * 16 14 13 18 18 N 1.47026 * 107.26653 * 337.80548 * 17 16 14 19 19 C 1.36935 * 125.64571 * 178.98480 * 18 17 16 20 20 H 1.07995 * 119.99870 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00131 * 359.97394 * 19 18 17 22 22 N 1.31622 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00132 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46808 * 90.00149 * 23 21 19 25 25 H 1.48494 * 109.47644 * 210.00341 * 23 21 19 26 26 H 1.48503 * 109.47353 * 330.00520 * 23 21 19 27 27 C 1.47419 * 108.70401 * 358.93933 * 18 17 16 28 28 H 1.08996 * 109.46832 * 270.01938 * 1 2 3 29 29 H 1.09002 * 109.47492 * 30.02171 * 1 2 3 30 30 H 1.09003 * 109.46946 * 150.02101 * 1 2 3 31 31 H 1.07996 * 120.01384 * 0.32970 * 5 4 3 32 32 H 1.07997 * 119.66919 * 179.97438 * 6 5 4 33 33 H 1.07992 * 119.90609 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.18453 * 180.02562 * 8 7 6 35 35 H 0.97002 * 119.99602 * 359.97438 * 13 11 10 36 36 H 1.09008 * 110.72069 * 35.78789 * 16 14 13 37 37 H 1.09007 * 110.72350 * 158.88271 * 16 14 13 38 38 H 1.08998 * 109.88065 * 97.21973 * 17 16 14 39 39 H 1.08993 * 109.88134 * 218.39052 * 17 16 14 40 40 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.36792 * 265.28887 * 27 18 17 42 42 H 1.09003 * 110.37016 * 142.96628 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2759 1.0952 0.0000 4 6 3.5865 0.7751 0.0006 5 6 4.7498 1.5352 0.0003 6 6 5.9795 0.9122 0.0006 7 6 6.0711 -0.4715 0.0005 8 6 4.9281 -1.2421 -0.0004 9 6 3.6820 -0.6240 -0.0006 10 6 2.2888 -1.1134 0.0005 11 6 1.8396 -2.5139 0.0016 12 8 1.6534 -3.0921 1.0556 13 7 1.6342 -3.1568 -1.1650 14 6 1.1862 -4.5515 -1.1639 15 1 1.5681 -5.0816 -0.2913 16 6 1.5997 -5.2695 -2.4757 17 6 0.4888 -4.8531 -3.4627 18 7 -0.6811 -4.4614 -2.6630 19 6 -1.8731 -4.0079 -3.1617 20 1 -2.6752 -3.7449 -2.4881 21 6 -2.0503 -3.8862 -4.5331 22 7 -1.0729 -4.2071 -5.3541 23 14 -3.6766 -3.2683 -5.2134 24 1 -3.6307 -1.7892 -5.3386 25 1 -3.9153 -3.8709 -6.5494 26 1 -4.7766 -3.6532 -4.2930 27 6 -0.3588 -4.6387 -1.2355 28 1 -0.3633 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.6906 2.6135 0.0050 32 1 6.8804 1.5077 0.0000 33 1 7.0408 -0.9469 0.0002 34 1 4.9997 -2.3198 0.0000 35 1 1.7823 -2.6956 -2.0054 36 1 2.5724 -4.9165 -2.8185 37 1 1.6105 -6.3506 -2.3368 38 1 0.8254 -4.0093 -4.0651 39 1 0.2323 -5.6932 -4.1080 40 1 -1.1969 -4.1224 -6.3124 41 1 -0.7003 -5.6136 -0.8877 42 1 -0.8113 -3.8437 -0.6427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014555301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:45 Heat of formation + Delta-G solvation = 19.293873 kcal Electronic energy + Delta-G solvation = -26000.513479 eV Core-core repulsion = 22333.627450 eV Total energy + Delta-G solvation = -3666.886029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.65750 -39.39619 -38.05451 -37.19247 -33.77331 -33.35903 -31.71527 -31.36024 -30.53897 -29.21325 -27.68215 -26.94242 -24.60458 -23.38311 -23.07364 -21.71178 -20.28306 -20.06246 -19.69776 -17.99747 -17.07859 -16.85718 -16.56618 -16.00701 -15.70666 -15.38778 -14.67107 -14.49219 -14.17990 -13.91819 -13.78542 -13.73572 -13.22320 -13.18227 -13.00552 -12.51877 -12.37269 -12.33246 -11.95828 -11.84987 -11.82297 -11.11438 -10.99303 -10.92071 -10.75459 -10.46540 -10.17285 -10.12060 -9.97908 -9.73470 -9.70410 -8.78733 -8.77930 -8.55241 -8.22984 -6.85327 -5.74914 -3.07794 0.71887 1.16988 2.00376 2.46403 2.71584 3.37103 3.43114 3.44669 3.47690 3.58641 4.22463 4.47179 4.53592 4.76192 4.91492 5.03989 5.08487 5.12527 5.22283 5.32175 5.40114 5.42262 5.45171 5.51510 5.63232 5.74296 5.79546 5.81907 6.05380 6.09296 6.16791 6.20183 6.26081 6.34667 6.46131 6.47747 6.49293 6.64420 6.99169 6.99934 7.50706 7.53754 7.76569 7.84208 8.21631 8.46636 9.18778 9.78932 10.44713 11.36927 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.003745 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.891918 B = 7474.321399 C = 8038.505547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.093 3.907 3 O -0.185 6.185 4 C 0.049 3.951 5 C -0.103 4.103 6 C -0.099 4.099 7 C -0.131 4.131 8 C -0.071 4.071 9 C -0.094 4.094 10 C -0.226 4.226 11 C 0.592 3.408 12 O -0.540 6.540 13 N -0.692 5.692 14 C 0.126 3.874 15 H 0.091 0.909 16 C -0.153 4.153 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.029 0.971 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 8.986 9.368 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.086 6.086 4 C 0.002 3.998 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.149 4.149 8 C -0.089 4.089 9 C -0.095 4.095 10 C -0.230 4.230 11 C 0.377 3.623 12 O -0.417 6.417 13 N -0.342 5.342 14 C 0.020 3.980 15 H 0.109 0.891 16 C -0.192 4.192 17 C 0.051 3.949 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.531 8.849 9.891 18.253 hybrid contribution -0.742 0.429 -0.920 1.257 sum 11.789 9.278 8.972 17.480 Atomic orbital electron populations 1.20641 0.83548 1.05658 1.04601 1.22651 0.93916 0.82411 0.96728 1.83793 1.15194 1.33816 1.75783 1.19519 0.82986 0.93252 1.04027 1.19929 0.88055 0.99673 1.04522 1.20894 0.96317 0.94756 0.99701 1.21038 0.98222 0.93712 1.01945 1.20536 0.89987 1.00286 0.98109 1.19487 0.92662 0.92666 1.04711 1.20646 0.92112 0.94252 1.16013 1.17064 0.76934 0.84186 0.84118 1.90790 1.52197 1.67412 1.31346 1.45873 1.66472 1.13677 1.08132 1.22208 0.96245 0.80715 0.98790 0.89088 1.23229 1.00310 0.99828 0.95865 1.21172 0.83992 0.99068 0.90669 1.44477 1.12315 1.77161 0.99112 1.19040 0.89644 1.36229 0.90516 0.90532 1.24772 0.97938 1.01774 0.95887 1.69949 1.30928 1.54012 1.02132 0.86142 0.83047 0.78344 0.78370 1.21663 1.21702 1.20727 1.21936 0.91765 0.98398 0.88032 0.88852 0.89367 0.87927 0.84968 0.84717 0.85142 0.85427 0.76007 0.91604 0.90870 0.93590 0.93727 0.93790 0.95344 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.20 36.00 0.37 -0.70 16 2 C 0.09 1.34 7.30 -35.10 -0.26 1.08 16 3 O -0.18 -2.61 10.53 5.30 0.06 -2.56 16 4 C 0.05 0.66 7.39 -38.56 -0.28 0.38 16 5 C -0.10 -1.08 10.06 -39.46 -0.40 -1.48 16 6 C -0.10 -0.88 10.01 -39.56 -0.40 -1.28 16 7 C -0.13 -1.28 10.04 -39.56 -0.40 -1.67 16 8 C -0.07 -0.88 10.09 -39.40 -0.40 -1.28 16 9 C -0.09 -1.36 6.39 -104.98 -0.67 -2.03 16 10 C -0.23 -3.57 6.06 -103.25 -0.63 -4.19 16 11 C 0.59 10.32 7.20 -12.67 -0.09 10.23 16 12 O -0.54 -10.93 16.75 5.24 0.09 -10.85 16 13 N -0.69 -11.74 5.18 -52.91 -0.27 -12.01 16 14 C 0.13 2.23 3.43 -65.79 -0.23 2.01 16 15 H 0.09 1.57 7.54 -51.92 -0.39 1.18 16 16 C -0.15 -2.69 6.55 -24.90 -0.16 -2.85 16 17 C 0.18 4.03 5.36 -3.06 -0.02 4.01 16 18 N -0.60 -14.78 3.39 -170.08 -0.58 -15.35 16 19 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.25 10.31 55.49 0.57 -25.68 16 23 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 C 0.13 2.61 6.93 -2.53 -0.02 2.59 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.40 7.86 -51.93 -0.41 0.99 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.41 6.77 8.65 -40.82 -0.35 6.42 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 39 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -32.11 355.97 -9.32 -41.43 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.70 Total: 4.77 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.82 Total: -1.76 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.28 Total: -53.05 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.14 Total: -13.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.11 -9.32 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014555301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds