Wall clock time and date at job start Tue Mar 31 2020 10:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33817 * 125.07283 * 2 1 4 4 C 1.34911 * 111.34829 * 179.97438 * 3 2 1 5 5 C 1.38965 * 133.11687 * 179.97438 * 4 3 2 6 6 C 1.37845 * 119.97415 * 180.02562 * 5 4 3 7 7 C 1.38679 * 120.65690 * 0.02562 * 6 5 4 8 8 C 1.37851 * 120.19737 * 0.02562 * 7 6 5 9 9 C 1.39104 * 119.63061 * 359.97317 * 8 7 6 10 10 C 1.36052 * 125.07665 * 179.97438 * 2 1 3 11 11 C 1.47079 * 127.13966 * 359.97438 * 10 2 1 12 12 O 1.21647 * 119.99931 * 270.04335 * 11 10 2 13 13 N 1.34779 * 120.00156 * 90.04465 * 11 10 2 14 14 C 1.46492 * 120.00314 * 180.02562 * 13 11 10 15 15 H 1.09007 * 110.88596 * 328.87496 * 14 13 11 16 16 C 1.55153 * 111.00619 * 204.99919 * 14 13 11 17 17 C 1.54328 * 102.94423 * 277.42548 * 16 14 13 18 18 N 1.47026 * 107.26653 * 337.80548 * 17 16 14 19 19 C 1.36935 * 125.64571 * 178.98480 * 18 17 16 20 20 H 1.07995 * 119.99870 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00131 * 359.97394 * 19 18 17 22 22 N 1.31622 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00132 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46808 * 90.00149 * 23 21 19 25 25 H 1.48494 * 109.47644 * 210.00341 * 23 21 19 26 26 H 1.48503 * 109.47353 * 330.00520 * 23 21 19 27 27 C 1.47419 * 108.70401 * 358.93933 * 18 17 16 28 28 H 1.08996 * 109.46832 * 270.01938 * 1 2 3 29 29 H 1.09002 * 109.47492 * 30.02171 * 1 2 3 30 30 H 1.09003 * 109.46946 * 150.02101 * 1 2 3 31 31 H 1.07996 * 120.01384 * 0.32970 * 5 4 3 32 32 H 1.07997 * 119.66919 * 179.97438 * 6 5 4 33 33 H 1.07992 * 119.90609 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.18453 * 180.02562 * 8 7 6 35 35 H 0.97002 * 119.99602 * 359.97438 * 13 11 10 36 36 H 1.09008 * 110.72069 * 35.78789 * 16 14 13 37 37 H 1.09007 * 110.72350 * 158.88271 * 16 14 13 38 38 H 1.08998 * 109.88065 * 97.21973 * 17 16 14 39 39 H 1.08993 * 109.88134 * 218.39052 * 17 16 14 40 40 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.36792 * 265.28887 * 27 18 17 42 42 H 1.09003 * 110.37016 * 142.96628 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2759 1.0952 0.0000 4 6 3.5865 0.7751 0.0006 5 6 4.7498 1.5352 0.0003 6 6 5.9795 0.9122 0.0006 7 6 6.0711 -0.4715 0.0005 8 6 4.9281 -1.2421 -0.0004 9 6 3.6820 -0.6240 -0.0006 10 6 2.2888 -1.1134 0.0005 11 6 1.8396 -2.5139 0.0016 12 8 1.6534 -3.0921 1.0556 13 7 1.6342 -3.1568 -1.1650 14 6 1.1862 -4.5515 -1.1639 15 1 1.5681 -5.0816 -0.2913 16 6 1.5997 -5.2695 -2.4757 17 6 0.4888 -4.8531 -3.4627 18 7 -0.6811 -4.4614 -2.6630 19 6 -1.8731 -4.0079 -3.1617 20 1 -2.6752 -3.7449 -2.4881 21 6 -2.0503 -3.8862 -4.5331 22 7 -1.0729 -4.2071 -5.3541 23 14 -3.6766 -3.2683 -5.2134 24 1 -3.6307 -1.7892 -5.3386 25 1 -3.9153 -3.8709 -6.5494 26 1 -4.7766 -3.6532 -4.2930 27 6 -0.3588 -4.6387 -1.2355 28 1 -0.3633 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.6906 2.6135 0.0050 32 1 6.8804 1.5077 0.0000 33 1 7.0408 -0.9469 0.0002 34 1 4.9997 -2.3198 0.0000 35 1 1.7823 -2.6956 -2.0054 36 1 2.5724 -4.9165 -2.8185 37 1 1.6105 -6.3506 -2.3368 38 1 0.8254 -4.0093 -4.0651 39 1 0.2323 -5.6932 -4.1080 40 1 -1.1969 -4.1224 -6.3124 41 1 -0.7003 -5.6136 -0.8877 42 1 -0.8113 -3.8437 -0.6427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014555301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:44 Heat of formation + Delta-G solvation = -0.131135 kcal Electronic energy + Delta-G solvation = -26001.355811 eV Core-core repulsion = 22333.627450 eV Total energy + Delta-G solvation = -3667.728360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.66150 -40.85650 -38.90299 -38.84667 -35.43573 -34.55109 -33.45985 -32.28374 -31.42511 -30.99061 -29.17708 -28.14322 -26.49361 -24.63492 -24.01515 -22.62120 -22.02698 -21.55603 -21.06934 -19.21537 -18.71253 -18.00984 -17.75219 -17.29311 -16.91918 -16.64238 -16.31522 -15.89368 -15.54348 -15.45050 -15.01359 -14.79319 -14.61819 -14.18929 -14.14420 -13.87432 -13.83924 -13.57183 -13.32522 -13.20791 -12.90813 -12.79399 -12.71529 -12.32715 -12.17378 -12.02737 -11.97410 -11.81773 -11.61484 -11.28123 -11.04282 -10.71632 -10.16646 -9.66630 -9.20282 -8.86312 -7.84128 -5.18427 -0.19951 0.29787 0.96807 1.34986 1.46929 1.47689 1.48084 1.56448 2.19408 2.49922 2.69502 3.25701 3.35297 3.50412 3.65795 3.76053 3.92187 3.95750 4.06198 4.09232 4.20133 4.28388 4.32449 4.38725 4.46518 4.60054 4.65521 4.69961 4.73876 4.86944 4.93397 4.95939 5.01576 5.12797 5.21351 5.34634 5.45671 5.45698 5.49160 5.63143 5.66175 5.76555 6.04733 6.20012 6.43776 7.07096 7.12091 7.77817 8.42121 9.25973 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.003745 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.891918 B = 7474.321399 C = 8038.505547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 O -0.189 6.189 4 C 0.024 3.976 5 C -0.105 4.105 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.095 4.095 9 C -0.119 4.119 10 C -0.255 4.255 11 C 0.601 3.399 12 O -0.572 6.572 13 N -0.688 5.688 14 C 0.137 3.863 15 H 0.105 0.895 16 C -0.134 4.134 17 C 0.185 3.815 18 N -0.620 5.620 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.059 4.059 22 N -0.947 5.947 23 Si 0.973 3.027 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.124 3.876 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.406 0.594 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.018 0.982 39 H 0.010 0.990 40 H 0.246 0.754 41 H 0.035 0.965 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.673 10.316 10.059 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 O -0.090 6.090 4 C -0.022 4.022 5 C -0.123 4.123 6 C -0.105 4.105 7 C -0.138 4.138 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.260 4.260 11 C 0.387 3.613 12 O -0.452 6.452 13 N -0.336 5.336 14 C 0.032 3.968 15 H 0.123 0.877 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.346 5.346 19 C -0.368 4.368 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.596 5.596 23 Si 0.802 3.198 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.198 1.198 27 C -0.003 4.003 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.194 0.806 33 H 0.180 0.820 34 H 0.143 0.857 35 H 0.241 0.759 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.346 10.183 10.602 20.540 hybrid contribution -1.212 0.049 -1.096 1.635 sum 13.133 10.232 9.505 19.171 Atomic orbital electron populations 1.20679 0.82425 1.05594 1.05515 1.22935 0.94668 0.82328 0.95948 1.83771 1.15772 1.33502 1.75915 1.20025 0.83320 0.93456 1.05403 1.20423 0.87435 1.01003 1.03461 1.21436 0.97145 0.94756 0.97164 1.21479 0.98558 0.94224 0.99535 1.20738 0.90302 1.00669 0.99635 1.19692 0.92669 0.93437 1.06242 1.20630 0.93633 0.93484 1.18234 1.17242 0.75838 0.84722 0.83472 1.90757 1.53695 1.68401 1.32322 1.45851 1.66121 1.13452 1.08219 1.22075 0.93991 0.81368 0.99369 0.87708 1.23086 0.99226 1.01067 0.93847 1.20937 0.85125 0.96635 0.91332 1.44698 1.12120 1.76945 1.00872 1.19364 0.90726 1.35837 0.90887 0.90511 1.25523 1.01045 1.02488 0.96200 1.70153 1.32521 1.55107 1.01841 0.85158 0.79637 0.77710 0.77297 1.21223 1.22188 1.19776 1.22052 0.94023 0.98226 0.85964 0.87409 0.87372 0.89909 0.82439 0.80575 0.81994 0.85679 0.75879 0.89196 0.88807 0.96373 0.97141 0.94435 0.94698 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 10.20 71.23 0.73 -1.38 16 2 C 0.09 2.67 7.30 25.18 0.18 2.86 16 3 O -0.19 -5.30 10.53 -3.94 -0.04 -5.34 16 4 C 0.02 0.63 7.39 22.93 0.17 0.80 16 5 C -0.11 -1.92 10.06 22.35 0.22 -1.70 16 6 C -0.09 -1.22 10.01 22.28 0.22 -0.99 16 7 C -0.12 -1.97 10.04 22.28 0.22 -1.75 16 8 C -0.10 -2.27 10.09 22.39 0.23 -2.05 16 9 C -0.12 -3.45 6.39 -20.09 -0.13 -3.58 16 10 C -0.26 -8.25 6.06 -18.98 -0.12 -8.37 16 11 C 0.60 21.33 7.20 86.56 0.62 21.96 16 12 O -0.57 -23.51 16.75 -4.18 -0.07 -23.58 16 13 N -0.69 -23.52 5.18 -439.55 -2.28 -25.80 16 14 C 0.14 4.81 3.43 46.38 0.16 4.97 16 15 H 0.11 3.48 7.54 -2.38 -0.02 3.46 16 16 C -0.13 -4.56 6.55 31.78 0.21 -4.35 16 17 C 0.18 8.64 5.36 86.73 0.47 9.10 16 18 N -0.62 -30.90 3.39 -692.00 -2.35 -33.25 16 19 C -0.24 -13.16 10.28 84.03 0.86 -12.30 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 21 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 22 N -0.95 -55.32 10.31 21.65 0.22 -55.10 16 23 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.12 5.16 6.93 86.86 0.60 5.76 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.41 13.84 8.65 -92.71 -0.80 13.04 16 36 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 39 H 0.01 0.55 7.50 -2.39 -0.02 0.53 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.65 355.97 2.87 -68.78 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.24 Total: 21.01 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.12 Total: 6.16 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.40 Total: -114.15 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.11 Total: -28.92 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.65 2.87 -68.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014555301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.649 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds