Wall clock time and date at job start Tue Mar 31 2020 10:48:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.37832 * 120.07648 * 2 1
4 4 C 1.38794 * 120.74952 * 180.02562 * 3 2 1
5 5 C 1.36659 * 120.43896 * 0.26665 * 4 3 2
6 6 C 1.39657 * 119.71236 * 359.48001 * 5 4 3
7 7 C 1.46256 * 134.19805 * 180.20320 * 6 5 4
8 8 C 1.35800 * 106.08110 * 180.28369 * 7 6 5
9 9 C 1.46983 * 125.12358 * 179.97438 * 8 7 6
10 10 O 1.21651 * 120.00052 * 359.97438 * 9 8 7
11 11 N 1.34775 * 119.99643 * 180.02562 * 9 8 7
12 12 C 1.46506 * 119.99725 * 180.02562 * 11 9 8
13 13 H 1.09002 * 110.88547 * 31.11649 * 12 11 9
14 14 C 1.55159 * 111.00360 * 154.99914 * 12 11 9
15 15 C 1.54323 * 102.94074 * 153.57369 * 14 12 11
16 16 N 1.47019 * 107.27438 * 337.80444 * 15 14 12
17 17 C 1.36938 * 125.65307 * 178.95989 * 16 15 14
18 18 H 1.07991 * 119.99920 * 179.97438 * 17 16 15
19 19 C 1.38812 * 119.99476 * 359.97438 * 17 16 15
20 20 N 1.31623 * 120.00277 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 119.99800 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47211 * 60.00000 * 21 19 17
23 23 H 1.48502 * 109.47462 * 180.02562 * 21 19 17
24 24 H 1.48497 * 109.47295 * 299.99903 * 21 19 17
25 25 C 1.47429 * 108.70018 * 358.94554 * 16 15 14
26 26 O 1.34938 * 109.74842 * 359.97438 * 8 7 6
27 27 C 1.34716 * 110.86735 * 0.02562 * 26 8 7
28 28 H 1.08997 * 109.46834 * 269.97798 * 1 2 3
29 29 H 1.09001 * 109.46665 * 29.97436 * 1 2 3
30 30 H 1.08995 * 109.47372 * 149.98026 * 1 2 3
31 31 H 1.08001 * 119.62709 * 0.02562 * 3 2 1
32 32 H 1.07997 * 119.78439 * 180.02562 * 4 3 2
33 33 H 1.08005 * 120.14341 * 179.69859 * 5 4 3
34 34 H 1.08001 * 126.95459 * 0.30032 * 7 6 5
35 35 H 0.96998 * 120.00625 * 359.97438 * 11 9 8
36 36 H 1.09003 * 110.71650 * 271.93681 * 14 12 11
37 37 H 1.08996 * 110.72109 * 35.03323 * 14 12 11
38 38 H 1.09007 * 109.88282 * 97.22646 * 15 14 12
39 39 H 1.08996 * 109.88162 * 218.38587 * 15 14 12
40 40 H 0.96995 * 119.99876 * 180.02562 * 20 19 17
41 41 H 1.09006 * 110.36274 * 265.28847 * 25 16 15
42 42 H 1.08999 * 110.36709 * 142.96913 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1977 1.1927 0.0000
4 6 3.5856 1.2090 -0.0005
5 6 4.2917 0.0390 -0.0066
6 6 3.6109 -1.1804 -0.0012
7 6 4.0295 -2.5818 -0.0012
8 6 2.8868 -3.3156 -0.0007
9 6 2.8249 -4.7841 -0.0010
10 8 3.8518 -5.4362 -0.0023
11 7 1.6303 -5.4081 -0.0009
12 6 1.5685 -6.8719 -0.0007
13 1 2.4232 -7.2968 0.5257
14 6 0.2335 -7.3721 0.6115
15 6 0.0376 -8.7464 -0.0626
16 7 0.8241 -8.7395 -1.3047
17 6 0.9341 -9.7821 -2.1857
18 1 1.5390 -9.6768 -3.0741
19 6 0.2681 -10.9743 -1.9365
20 7 -0.4687 -11.1027 -0.8534
21 14 0.4175 -12.3963 -3.1385
22 1 1.8423 -12.7988 -3.2546
23 1 -0.3836 -13.5461 -2.6472
24 1 -0.0877 -11.9746 -4.4697
25 6 1.4745 -7.4239 -1.4450
26 8 1.8169 -2.4933 0.0002
27 6 2.2034 -1.2028 -0.0003
28 1 -0.3633 -0.0004 1.0277
29 1 -0.3633 0.8902 -0.5135
30 1 -0.3634 -0.8898 -0.5141
31 1 1.6529 2.1253 0.0004
32 1 4.1110 2.1526 -0.0001
33 1 5.3716 0.0573 -0.0119
34 1 5.0422 -2.9569 -0.0013
35 1 0.8114 -4.8882 -0.0003
36 1 0.3221 -7.4818 1.6924
37 1 -0.5835 -6.6961 0.3596
38 1 0.3941 -9.5373 0.5975
39 1 -1.0168 -8.8997 -0.2923
40 1 -0.9337 -11.9359 -0.6793
41 1 0.8665 -6.7643 -2.0643
42 1 2.4702 -7.5367 -1.8737
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001016343497.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:20
Heat of formation + Delta-G solvation = 19.173685 kcal
Electronic energy + Delta-G solvation = -25015.085538 eV
Core-core repulsion = 21348.194297 eV
Total energy + Delta-G solvation = -3666.891241 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.75113 -39.65236 -38.33130 -37.27626 -34.22597 -33.87391 -31.98117 -31.66978
-30.08662 -29.12499 -27.33559 -27.15475 -24.86250 -23.70959 -22.94855 -21.06848
-20.80006 -20.41604 -19.99891 -18.25522 -17.75521 -16.92313 -16.61805 -16.14433
-15.91783 -15.21939 -14.71547 -14.61797 -14.25203 -14.09676 -14.04658 -13.69674
-13.44961 -13.28116 -12.88532 -12.70087 -12.45225 -12.29504 -12.24254 -11.99881
-11.82835 -11.31024 -11.07525 -10.94079 -10.76351 -10.53388 -10.30730 -10.17016
-10.05360 -9.94031 -9.71625 -8.99745 -8.85553 -8.60450 -8.42221 -6.85487
-5.71861 -3.05699 0.31659 1.01731 1.61747 2.24074 3.09213 3.13999
3.34193 3.42373 3.46245 3.47663 4.19066 4.26233 4.50012 4.51984
4.66330 4.82915 4.90121 5.04012 5.17914 5.22984 5.25555 5.29386
5.41845 5.45002 5.57523 5.67327 5.70117 5.75229 5.86955 6.00586
6.03083 6.09155 6.10856 6.21993 6.28864 6.38922 6.48966 6.63933
6.73358 6.91201 7.49452 7.55393 7.56441 7.80226 8.09081 8.24418
9.21060 9.80747 10.45344 11.40039
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.029441 B = 0.002471 C = 0.002393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.815733 B =11330.951645 C =11698.313011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.074 4.074
3 C -0.091 4.091
4 C -0.135 4.135
5 C -0.067 4.067
6 C -0.138 4.138
7 C -0.120 4.120
8 C -0.016 4.016
9 C 0.595 3.405
10 O -0.513 6.513
11 N -0.700 5.700
12 C 0.124 3.876
13 H 0.101 0.899
14 C -0.149 4.149
15 C 0.179 3.821
16 N -0.603 5.603
17 C -0.228 4.228
18 H 0.078 0.922
19 C -0.008 4.008
20 N -0.924 5.924
21 Si 0.914 3.086
22 H -0.284 1.284
23 H -0.290 1.290
24 H -0.285 1.285
25 C 0.129 3.871
26 O -0.182 6.182
27 C 0.068 3.932
28 H 0.074 0.926
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.135 0.865
32 H 0.131 0.869
33 H 0.130 0.870
34 H 0.171 0.829
35 H 0.404 0.596
36 H 0.067 0.933
37 H 0.062 0.938
38 H 0.051 0.949
39 H 0.047 0.953
40 H 0.253 0.747
41 H 0.021 0.979
42 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.966 26.265 4.562 26.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.075 4.075
3 C -0.109 4.109
4 C -0.153 4.153
5 C -0.085 4.085
6 C -0.139 4.139
7 C -0.141 4.141
8 C -0.066 4.066
9 C 0.379 3.621
10 O -0.390 6.390
11 N -0.349 5.349
12 C 0.019 3.981
13 H 0.119 0.881
14 C -0.188 4.188
15 C 0.054 3.946
16 N -0.330 5.330
17 C -0.356 4.356
18 H 0.096 0.904
19 C -0.204 4.204
20 N -0.571 5.571
21 Si 0.745 3.255
22 H -0.211 1.211
23 H -0.216 1.216
24 H -0.212 1.212
25 C 0.001 3.999
26 O -0.083 6.083
27 C 0.020 3.980
28 H 0.092 0.908
29 H 0.091 0.909
30 H 0.090 0.910
31 H 0.153 0.847
32 H 0.149 0.851
33 H 0.148 0.852
34 H 0.188 0.812
35 H 0.239 0.761
36 H 0.086 0.914
37 H 0.081 0.919
38 H 0.069 0.931
39 H 0.065 0.935
40 H 0.064 0.936
41 H 0.039 0.961
42 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 4.307 25.417 4.545 26.177
hybrid contribution -0.205 -0.449 -0.616 0.790
sum 4.103 24.968 3.928 25.606
Atomic orbital electron populations
1.20770 0.90082 1.03422 1.02874 1.18863 0.96422 0.88277 1.03930
1.20892 0.94228 0.96425 0.99387 1.20769 0.94022 0.98140 1.02361
1.20353 1.00111 0.89989 0.98077 1.19933 0.93038 0.94003 1.06969
1.22737 0.99389 0.89972 1.01966 1.22186 0.85361 0.91109 1.07931
1.16680 0.84815 0.82926 0.77661 1.90906 1.33882 1.63760 1.50455
1.45966 1.07571 1.08541 1.72821 1.22473 0.99896 0.76547 0.99149
0.88056 1.23203 0.95036 1.00513 1.00065 1.21159 0.96461 0.89958
0.86994 1.44380 1.55102 1.09626 1.23912 1.19026 1.25215 0.90416
1.00959 0.90382 1.24808 0.99652 0.97961 0.98008 1.69932 1.35032
1.25878 1.26299 0.86161 0.77503 0.81752 0.80124 1.21089 1.21580
1.21164 1.21826 0.96650 0.88381 0.92995 1.84012 1.33971 1.14264
1.76083 1.19556 0.92805 0.83398 1.02234 0.90771 0.90947 0.91047
0.84669 0.85133 0.85186 0.81177 0.76117 0.91418 0.91894 0.93099
0.93459 0.93645 0.96124 0.93695
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.83 10.02 36.00 0.36 -0.46 16
2 C -0.07 -0.69 5.89 -104.49 -0.62 -1.30 16
3 C -0.09 -0.67 9.66 -39.52 -0.38 -1.05 16
4 C -0.13 -0.97 9.98 -39.95 -0.40 -1.37 16
5 C -0.07 -0.59 10.06 -39.62 -0.40 -0.98 16
6 C -0.14 -1.57 6.38 -105.19 -0.67 -2.24 16
7 C -0.12 -1.48 10.80 -37.24 -0.40 -1.88 16
8 C -0.02 -0.22 7.07 -36.91 -0.26 -0.48 16
9 C 0.59 9.41 7.79 -12.72 -0.10 9.31 16
10 O -0.51 -9.68 16.46 5.23 0.09 -9.59 16
11 N -0.70 -10.56 5.19 -52.94 -0.27 -10.84 16
12 C 0.12 2.25 3.42 -65.78 -0.23 2.03 16
13 H 0.10 2.00 7.54 -51.93 -0.39 1.60 16
14 C -0.15 -2.68 6.60 -24.90 -0.16 -2.84 16
15 C 0.18 4.29 5.37 -3.07 -0.02 4.28 16
16 N -0.60 -15.62 3.39 -170.07 -0.58 -16.20 16
17 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16
18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16
19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16
20 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16
21 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16
22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16
23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
25 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16
26 O -0.18 -2.33 10.28 2.80 0.03 -2.30 16
27 C 0.07 0.80 7.07 -38.35 -0.27 0.53 16
28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16
30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16
31 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16
32 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16
33 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
34 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16
35 H 0.40 5.15 8.28 -40.82 -0.34 4.81 16
36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
37 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16
38 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16
39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16
40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16
LS Contribution 355.15 15.07 5.35 5.35
Total: -1.00 -32.66 355.15 -9.34 -41.99
By element:
Atomic # 1 Polarization: 7.17 SS G_CDS: -5.69 Total: 1.49 kcal
Atomic # 6 Polarization: 3.17 SS G_CDS: -3.81 Total: -0.65 kcal
Atomic # 7 Polarization: -53.31 SS G_CDS: -0.28 Total: -53.59 kcal
Atomic # 8 Polarization: -12.01 SS G_CDS: 0.11 Total: -11.89 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -32.66 -9.34 -41.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016343497.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.166 kcal
(2) G-P(sol) polarization free energy of solvation -32.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds