Wall clock time and date at job start Tue Mar 31 2020 10:48:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.37832 * 120.07648 * 2 1
4 4 C 1.38794 * 120.74952 * 180.02562 * 3 2 1
5 5 C 1.36659 * 120.43896 * 0.26665 * 4 3 2
6 6 C 1.39657 * 119.71236 * 359.48001 * 5 4 3
7 7 C 1.46256 * 134.19805 * 180.20320 * 6 5 4
8 8 C 1.35800 * 106.08110 * 180.28369 * 7 6 5
9 9 C 1.46983 * 125.12358 * 179.97438 * 8 7 6
10 10 O 1.21651 * 120.00052 * 359.97438 * 9 8 7
11 11 N 1.34775 * 119.99643 * 180.02562 * 9 8 7
12 12 C 1.46506 * 119.99725 * 180.02562 * 11 9 8
13 13 H 1.09002 * 110.88547 * 31.11649 * 12 11 9
14 14 C 1.55159 * 111.00360 * 154.99914 * 12 11 9
15 15 C 1.54323 * 102.94074 * 153.57369 * 14 12 11
16 16 N 1.47019 * 107.27438 * 337.80444 * 15 14 12
17 17 C 1.36938 * 125.65307 * 178.95989 * 16 15 14
18 18 H 1.07991 * 119.99920 * 179.97438 * 17 16 15
19 19 C 1.38812 * 119.99476 * 359.97438 * 17 16 15
20 20 N 1.31623 * 120.00277 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 119.99800 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47211 * 60.00000 * 21 19 17
23 23 H 1.48502 * 109.47462 * 180.02562 * 21 19 17
24 24 H 1.48497 * 109.47295 * 299.99903 * 21 19 17
25 25 C 1.47429 * 108.70018 * 358.94554 * 16 15 14
26 26 O 1.34938 * 109.74842 * 359.97438 * 8 7 6
27 27 C 1.34716 * 110.86735 * 0.02562 * 26 8 7
28 28 H 1.08997 * 109.46834 * 269.97798 * 1 2 3
29 29 H 1.09001 * 109.46665 * 29.97436 * 1 2 3
30 30 H 1.08995 * 109.47372 * 149.98026 * 1 2 3
31 31 H 1.08001 * 119.62709 * 0.02562 * 3 2 1
32 32 H 1.07997 * 119.78439 * 180.02562 * 4 3 2
33 33 H 1.08005 * 120.14341 * 179.69859 * 5 4 3
34 34 H 1.08001 * 126.95459 * 0.30032 * 7 6 5
35 35 H 0.96998 * 120.00625 * 359.97438 * 11 9 8
36 36 H 1.09003 * 110.71650 * 271.93681 * 14 12 11
37 37 H 1.08996 * 110.72109 * 35.03323 * 14 12 11
38 38 H 1.09007 * 109.88282 * 97.22646 * 15 14 12
39 39 H 1.08996 * 109.88162 * 218.38587 * 15 14 12
40 40 H 0.96995 * 119.99876 * 180.02562 * 20 19 17
41 41 H 1.09006 * 110.36274 * 265.28847 * 25 16 15
42 42 H 1.08999 * 110.36709 * 142.96913 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1977 1.1927 0.0000
4 6 3.5856 1.2090 -0.0005
5 6 4.2917 0.0390 -0.0066
6 6 3.6109 -1.1804 -0.0012
7 6 4.0295 -2.5818 -0.0012
8 6 2.8868 -3.3156 -0.0007
9 6 2.8249 -4.7841 -0.0010
10 8 3.8518 -5.4362 -0.0023
11 7 1.6303 -5.4081 -0.0009
12 6 1.5685 -6.8719 -0.0007
13 1 2.4232 -7.2968 0.5257
14 6 0.2335 -7.3721 0.6115
15 6 0.0376 -8.7464 -0.0626
16 7 0.8241 -8.7395 -1.3047
17 6 0.9341 -9.7821 -2.1857
18 1 1.5390 -9.6768 -3.0741
19 6 0.2681 -10.9743 -1.9365
20 7 -0.4687 -11.1027 -0.8534
21 14 0.4175 -12.3963 -3.1385
22 1 1.8423 -12.7988 -3.2546
23 1 -0.3836 -13.5461 -2.6472
24 1 -0.0877 -11.9746 -4.4697
25 6 1.4745 -7.4239 -1.4450
26 8 1.8169 -2.4933 0.0002
27 6 2.2034 -1.2028 -0.0003
28 1 -0.3633 -0.0004 1.0277
29 1 -0.3633 0.8902 -0.5135
30 1 -0.3634 -0.8898 -0.5141
31 1 1.6529 2.1253 0.0004
32 1 4.1110 2.1526 -0.0001
33 1 5.3716 0.0573 -0.0119
34 1 5.0422 -2.9569 -0.0013
35 1 0.8114 -4.8882 -0.0003
36 1 0.3221 -7.4818 1.6924
37 1 -0.5835 -6.6961 0.3596
38 1 0.3941 -9.5373 0.5975
39 1 -1.0168 -8.8997 -0.2923
40 1 -0.9337 -11.9359 -0.6793
41 1 0.8665 -6.7643 -2.0643
42 1 2.4702 -7.5367 -1.8737
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001016343497.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:19
Heat of formation + Delta-G solvation = -1.027849 kcal
Electronic energy + Delta-G solvation = -25015.961542 eV
Core-core repulsion = 21348.194297 eV
Total energy + Delta-G solvation = -3667.767245 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.60474 -40.97129 -39.13398 -38.86487 -35.80193 -34.64289 -33.85791 -32.41274
-31.33228 -30.68282 -28.89859 -27.84181 -26.65925 -24.97927 -23.68158 -22.28767
-21.99010 -21.75469 -21.58397 -19.45369 -18.84108 -18.50902 -17.60722 -17.48666
-16.72299 -16.66861 -16.12936 -16.08490 -15.72840 -15.44112 -14.78091 -14.73790
-14.33252 -14.21808 -14.13610 -14.08170 -13.98025 -13.73831 -13.25580 -12.98972
-12.89871 -12.76938 -12.57257 -12.49935 -12.21604 -12.09225 -11.94369 -11.84397
-11.63855 -11.52236 -11.14056 -10.73048 -10.33639 -9.66479 -9.18198 -8.94926
-7.87970 -5.24608 -0.53057 0.32768 0.73919 1.29998 1.45189 1.48808
1.55041 1.92119 1.96180 2.48874 2.67556 3.27154 3.30848 3.52235
3.61260 3.75773 3.87529 3.95976 3.98177 4.02421 4.14843 4.30718
4.39455 4.49767 4.52818 4.57494 4.65210 4.79008 4.82176 4.86084
4.89694 4.97062 4.99474 5.24430 5.30386 5.32344 5.40773 5.41244
5.46636 5.55600 5.60699 5.71282 5.99205 6.16182 6.32594 6.86861
7.07171 7.71868 8.35294 9.22046
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.029441 B = 0.002471 C = 0.002393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.815733 B =11330.951645 C =11698.313011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.091 4.091
3 C -0.079 4.079
4 C -0.129 4.129
5 C -0.074 4.074
6 C -0.162 4.162
7 C -0.110 4.110
8 C -0.042 4.042
9 C 0.600 3.400
10 O -0.550 6.550
11 N -0.689 5.689
12 C 0.143 3.857
13 H 0.087 0.913
14 C -0.129 4.129
15 C 0.185 3.815
16 N -0.625 5.625
17 C -0.249 4.249
18 H 0.078 0.922
19 C -0.062 4.062
20 N -0.949 5.949
21 Si 0.981 3.019
22 H -0.279 1.279
23 H -0.290 1.290
24 H -0.276 1.276
25 C 0.128 3.872
26 O -0.189 6.189
27 C 0.046 3.954
28 H 0.080 0.920
29 H 0.094 0.906
30 H 0.057 0.943
31 H 0.170 0.830
32 H 0.165 0.835
33 H 0.150 0.850
34 H 0.178 0.822
35 H 0.418 0.582
36 H 0.092 0.908
37 H 0.090 0.910
38 H 0.017 0.983
39 H 0.019 0.981
40 H 0.249 0.751
41 H 0.030 0.970
42 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.098 29.698 4.519 30.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.092 4.092
3 C -0.097 4.097
4 C -0.146 4.146
5 C -0.092 4.092
6 C -0.163 4.163
7 C -0.131 4.131
8 C -0.091 4.091
9 C 0.386 3.614
10 O -0.430 6.430
11 N -0.339 5.339
12 C 0.037 3.963
13 H 0.105 0.895
14 C -0.167 4.167
15 C 0.060 3.940
16 N -0.352 5.352
17 C -0.378 4.378
18 H 0.096 0.904
19 C -0.256 4.256
20 N -0.597 5.597
21 Si 0.809 3.191
22 H -0.205 1.205
23 H -0.216 1.216
24 H -0.202 1.202
25 C 0.001 3.999
26 O -0.092 6.092
27 C -0.002 4.002
28 H 0.099 0.901
29 H 0.113 0.887
30 H 0.076 0.924
31 H 0.188 0.812
32 H 0.183 0.817
33 H 0.168 0.832
34 H 0.195 0.805
35 H 0.255 0.745
36 H 0.111 0.889
37 H 0.108 0.892
38 H 0.035 0.965
39 H 0.037 0.963
40 H 0.059 0.941
41 H 0.048 0.952
42 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 4.429 28.905 4.500 29.587
hybrid contribution -0.196 -1.292 -0.620 1.446
sum 4.233 27.613 3.880 28.204
Atomic orbital electron populations
1.20804 0.88900 1.03889 1.03423 1.19279 0.97590 0.87987 1.04334
1.21404 0.94647 0.96948 0.96716 1.21240 0.94191 0.98929 1.00287
1.20721 1.01388 0.89501 0.97550 1.20149 0.93283 0.94258 1.08598
1.23000 0.99362 0.90879 0.99845 1.21658 0.86268 0.90071 1.11141
1.16862 0.84180 0.83863 0.76483 1.90879 1.34986 1.64991 1.52147
1.45705 1.08301 1.07113 1.72739 1.21991 0.99514 0.78261 0.96494
0.89529 1.23021 0.95590 0.97260 1.00849 1.20948 0.94289 0.92583
0.86228 1.44661 1.55805 1.10586 1.24155 1.19389 1.25199 0.91580
1.01603 0.90372 1.25662 0.99594 1.00438 0.99870 1.70145 1.35672
1.26116 1.27781 0.85120 0.77520 0.78319 0.78161 1.20457 1.21632
1.20219 1.21925 0.95554 0.87063 0.95370 1.83950 1.33588 1.14907
1.76720 1.20072 0.93585 0.83429 1.03084 0.90145 0.88700 0.92385
0.81235 0.81699 0.83213 0.80495 0.74470 0.88948 0.89193 0.96459
0.96321 0.94132 0.95178 0.95081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.38 10.02 71.24 0.71 -0.67 16
2 C -0.09 -1.48 5.89 -19.78 -0.12 -1.60 16
3 C -0.08 -0.85 9.66 22.31 0.22 -0.64 16
4 C -0.13 -1.33 9.98 22.03 0.22 -1.11 16
5 C -0.07 -1.09 10.06 22.24 0.22 -0.87 16
6 C -0.16 -3.49 6.38 -20.23 -0.13 -3.62 16
7 C -0.11 -2.71 10.80 23.79 0.26 -2.45 16
8 C -0.04 -1.15 7.07 24.00 0.17 -0.98 16
9 C 0.60 19.24 7.79 86.54 0.67 19.91 16
10 O -0.55 -21.33 16.46 -4.19 -0.07 -21.40 16
11 N -0.69 -20.57 5.19 -439.63 -2.28 -22.86 16
12 C 0.14 5.22 3.42 46.38 0.16 5.38 16
13 H 0.09 3.48 7.54 -2.39 -0.02 3.46 16
14 C -0.13 -4.52 6.60 31.78 0.21 -4.31 16
15 C 0.18 9.10 5.37 86.73 0.47 9.57 16
16 N -0.63 -33.32 3.39 -691.99 -2.35 -35.67 16
17 C -0.25 -14.47 10.28 84.03 0.86 -13.61 16
18 H 0.08 4.40 7.83 -2.92 -0.02 4.37 16
19 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16
20 N -0.95 -57.40 10.31 21.65 0.22 -57.18 16
21 Si 0.98 46.63 29.55 68.60 2.03 48.66 16
22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
25 C 0.13 5.62 6.93 86.85 0.60 6.22 16
26 O -0.19 -4.83 10.28 -12.91 -0.13 -4.97 16
27 C 0.05 1.04 7.07 23.07 0.16 1.20 16
28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16
30 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16
31 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16
32 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16
33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16
34 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16
35 H 0.42 10.24 8.28 -92.71 -0.77 9.47 16
36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16
37 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16
38 H 0.02 0.95 7.38 -2.38 -0.02 0.93 16
39 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16
40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16
41 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16
42 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
Total: -1.00 -73.94 355.15 2.85 -71.10
By element:
Atomic # 1 Polarization: 12.78 SS G_CDS: 0.28 Total: 13.05 kcal
Atomic # 6 Polarization: 4.11 SS G_CDS: 5.16 Total: 9.26 kcal
Atomic # 7 Polarization: -111.29 SS G_CDS: -4.41 Total: -115.70 kcal
Atomic # 8 Polarization: -26.17 SS G_CDS: -0.20 Total: -26.37 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal
Total: -73.94 2.85 -71.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016343497.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.067 kcal
(2) G-P(sol) polarization free energy of solvation -73.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds