Wall clock time and date at job start Tue Mar 31 2020 10:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36665 * 120.14885 * 2 1 4 4 C 1.38795 * 120.44455 * 179.97438 * 3 2 1 5 5 C 1.37835 * 120.74383 * 0.04178 * 4 3 2 6 6 C 1.38985 * 119.85647 * 359.95971 * 5 4 3 7 7 O 1.34714 * 133.24799 * 180.34597 * 6 5 4 8 8 C 1.34944 * 110.86418 * 180.08323 * 7 6 5 9 9 C 1.46982 * 125.12537 * 179.86930 * 8 7 6 10 10 O 1.21653 * 119.99708 * 179.69172 * 9 8 7 11 11 N 1.34776 * 119.99968 * 359.69854 * 9 8 7 12 12 C 1.46501 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.88715 * 31.11705 * 12 11 9 14 14 C 1.55159 * 111.00248 * 155.00033 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.57245 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17 24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 C 1.35802 * 109.74915 * 359.60573 * 8 7 6 27 27 C 1.39666 * 120.14489 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47545 * 270.02671 * 1 2 3 29 29 H 1.09009 * 109.46960 * 30.02625 * 1 2 3 30 30 H 1.08995 * 109.47123 * 150.01710 * 1 2 3 31 31 H 1.07998 * 119.77095 * 359.97124 * 3 2 1 32 32 H 1.08001 * 119.62020 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.06920 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00333 * 359.97438 * 11 9 8 35 35 H 1.08996 * 110.71852 * 324.20747 * 14 12 11 36 36 H 1.08998 * 110.86977 * 201.00616 * 14 12 11 37 37 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 38 38 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 39 39 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 40 40 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 41 41 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 42 42 H 1.07999 * 126.96200 * 180.19361 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1818 0.0000 4 6 3.5813 1.1889 0.0005 5 6 4.2920 0.0080 0.0002 6 6 3.6160 -1.2064 0.0002 7 8 4.0244 -2.4901 0.0058 8 6 2.9685 -3.3304 0.0010 9 6 3.0553 -4.7977 0.0023 10 8 2.0395 -5.4671 0.0032 11 7 4.2603 -5.4014 0.0025 12 6 4.3468 -6.8639 0.0044 13 1 3.4993 -7.3039 -0.5209 14 6 5.6899 -7.3423 -0.6078 15 6 6.6712 -7.2250 0.5775 16 7 5.8717 -7.2561 1.8109 17 6 6.3650 -7.1573 3.0845 18 1 5.6919 -7.1915 3.9284 19 6 7.7301 -7.0132 3.2908 20 7 8.5503 -6.9710 2.2623 21 14 8.4030 -6.8777 5.0281 22 1 7.2826 -6.9516 6.0001 23 1 9.3508 -7.9928 5.2802 24 1 9.1105 -5.5816 5.1853 25 6 4.4515 -7.4176 1.4497 26 6 1.8136 -2.6161 0.0007 27 6 2.2083 -1.2078 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6521 2.1163 -0.0005 32 1 4.1102 2.1306 0.0009 33 1 5.3719 0.0262 0.0002 34 1 5.0703 -4.8677 0.0015 35 1 5.9944 -6.6904 -1.4265 36 1 5.6160 -8.3756 -0.9465 37 1 7.2184 -6.2844 0.5141 38 1 7.3700 -8.0616 0.5674 39 1 9.5042 -6.8699 2.4064 40 1 4.1708 -8.4704 1.4763 41 1 3.8204 -6.8387 2.1239 42 1 0.8073 -3.0084 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016369055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:28 Heat of formation + Delta-G solvation = 18.196198 kcal Electronic energy + Delta-G solvation = -25481.511628 eV Core-core repulsion = 21814.578001 eV Total energy + Delta-G solvation = -3666.933628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59416 -39.56976 -38.29321 -37.26497 -33.87933 -33.51590 -31.93082 -31.70896 -30.01644 -29.15036 -27.47898 -26.94156 -24.72757 -23.80019 -22.83168 -21.11440 -20.63417 -20.11300 -19.90321 -18.33074 -17.30490 -16.87038 -16.44268 -16.15527 -15.94333 -15.04542 -14.67272 -14.54782 -14.17822 -13.93849 -13.85681 -13.75891 -13.49923 -13.25535 -13.06496 -12.55248 -12.49167 -11.97767 -11.93054 -11.88782 -11.84862 -11.17479 -10.98616 -10.92511 -10.78360 -10.48581 -10.25003 -10.12605 -10.02961 -9.98015 -9.70174 -8.91793 -8.77835 -8.58016 -8.26942 -6.84099 -5.73292 -3.06112 0.45127 1.15269 1.76150 2.41648 3.21784 3.32176 3.39251 3.45323 3.45933 3.47400 4.29984 4.45250 4.49342 4.59666 4.88373 4.90736 5.04465 5.10463 5.22766 5.28758 5.35198 5.41468 5.45092 5.46577 5.51870 5.71966 5.75952 5.79624 5.95169 6.06333 6.12798 6.17041 6.27542 6.30424 6.38829 6.42566 6.46361 6.64023 6.85174 6.97584 7.52168 7.53743 7.70160 7.79056 8.22646 8.24021 9.20535 9.80373 10.45486 11.38685 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.003421 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.328791 B = 8182.555039 C = 9197.636661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.082 4.082 5 C -0.115 4.115 6 C 0.074 3.926 7 O -0.180 6.180 8 C -0.013 4.013 9 C 0.596 3.404 10 O -0.525 6.525 11 N -0.686 5.686 12 C 0.125 3.875 13 H 0.095 0.905 14 C -0.153 4.153 15 C 0.174 3.826 16 N -0.604 5.604 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.125 3.875 26 C -0.121 4.121 27 C -0.143 4.143 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.410 0.590 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.251 0.749 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 14.843 -8.541 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.025 3.975 7 O -0.081 6.081 8 C -0.063 4.063 9 C 0.381 3.619 10 O -0.404 6.404 11 N -0.335 5.335 12 C 0.020 3.980 13 H 0.113 0.887 14 C -0.192 4.192 15 C 0.049 3.951 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.002 4.002 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.476 14.249 -8.428 20.729 hybrid contribution 0.893 0.358 1.003 1.390 sum -11.584 14.607 -7.424 20.067 Atomic orbital electron populations 1.20821 0.90625 1.03127 1.02797 1.19147 0.96130 0.90696 0.96915 1.20661 0.94186 0.97412 1.04017 1.20952 0.94000 0.97051 0.98044 1.20016 1.00543 0.87589 1.05181 1.19752 0.92699 0.83938 1.01066 1.84082 1.34125 1.14089 1.75783 1.22149 0.85580 0.90925 1.07662 1.16645 0.84607 0.83085 0.77612 1.90853 1.35135 1.62745 1.51667 1.45797 1.07681 1.08423 1.71553 1.22311 0.98834 0.78284 0.98612 0.88731 1.23231 0.95352 1.00873 0.99753 1.21197 0.90784 1.01301 0.81794 1.44493 0.99895 1.86187 1.02540 1.19105 0.91027 1.42757 0.82448 0.90462 1.24778 0.95917 1.02263 0.97487 1.69956 1.02469 1.56903 1.27733 0.86049 0.78779 0.77257 0.83730 1.20539 1.21758 1.21792 1.21992 0.88245 0.97357 0.92624 1.22631 0.99027 0.90052 1.02459 1.19762 0.93028 0.93512 1.08052 0.90631 0.91142 0.91142 0.85285 0.84618 0.84647 0.75430 0.91481 0.90644 0.93534 0.93589 0.93842 0.95061 0.93865 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.96 36.00 0.36 -0.53 16 2 C -0.03 -0.30 5.88 -104.66 -0.62 -0.91 16 3 C -0.14 -1.28 9.63 -39.94 -0.38 -1.66 16 4 C -0.08 -0.73 10.01 -39.52 -0.40 -1.13 16 5 C -0.11 -1.28 10.07 -39.45 -0.40 -1.67 16 6 C 0.07 1.03 7.41 -38.35 -0.28 0.74 16 7 O -0.18 -2.81 10.28 2.79 0.03 -2.78 16 8 C -0.01 -0.21 7.07 -36.91 -0.26 -0.47 16 9 C 0.60 10.29 7.79 -12.72 -0.10 10.20 16 10 O -0.53 -10.01 16.46 5.23 0.09 -9.92 16 11 N -0.69 -11.90 5.19 -52.82 -0.27 -12.18 16 12 C 0.12 2.23 3.43 -65.66 -0.23 2.00 16 13 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 14 C -0.15 -2.70 6.54 -24.90 -0.16 -2.87 16 15 C 0.17 4.05 5.37 -3.07 -0.02 4.04 16 16 N -0.60 -15.21 3.39 -169.94 -0.58 -15.79 16 17 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.72 10.31 55.49 0.57 -26.15 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.12 2.65 6.95 -2.41 -0.02 2.63 16 26 C -0.12 -1.67 10.52 -37.23 -0.39 -2.06 16 27 C -0.14 -1.86 6.15 -105.19 -0.65 -2.50 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 30 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.41 7.09 8.38 -40.82 -0.34 6.75 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.19 7.38 -51.92 -0.38 0.80 16 38 H 0.05 1.19 7.50 -51.93 -0.39 0.81 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -32.03 354.91 -9.32 -41.34 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.69 Total: 3.88 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.79 Total: -0.96 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.28 Total: -54.11 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.11 Total: -12.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.03 -9.32 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016369055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.537 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds