Wall clock time and date at job start Tue Mar 31 2020 10:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36665 * 120.14885 * 2 1 4 4 C 1.38795 * 120.44455 * 179.97438 * 3 2 1 5 5 C 1.37835 * 120.74383 * 0.04178 * 4 3 2 6 6 C 1.38985 * 119.85647 * 359.95971 * 5 4 3 7 7 O 1.34714 * 133.24799 * 180.34597 * 6 5 4 8 8 C 1.34944 * 110.86418 * 180.08323 * 7 6 5 9 9 C 1.46982 * 125.12537 * 179.86930 * 8 7 6 10 10 O 1.21653 * 119.99708 * 179.69172 * 9 8 7 11 11 N 1.34776 * 119.99968 * 359.69854 * 9 8 7 12 12 C 1.46501 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.88715 * 31.11705 * 12 11 9 14 14 C 1.55159 * 111.00248 * 155.00033 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.57245 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17 24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 C 1.35802 * 109.74915 * 359.60573 * 8 7 6 27 27 C 1.39666 * 120.14489 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47545 * 270.02671 * 1 2 3 29 29 H 1.09009 * 109.46960 * 30.02625 * 1 2 3 30 30 H 1.08995 * 109.47123 * 150.01710 * 1 2 3 31 31 H 1.07998 * 119.77095 * 359.97124 * 3 2 1 32 32 H 1.08001 * 119.62020 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.06920 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00333 * 359.97438 * 11 9 8 35 35 H 1.08996 * 110.71852 * 324.20747 * 14 12 11 36 36 H 1.08998 * 110.86977 * 201.00616 * 14 12 11 37 37 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 38 38 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 39 39 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 40 40 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 41 41 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 42 42 H 1.07999 * 126.96200 * 180.19361 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1818 0.0000 4 6 3.5813 1.1889 0.0005 5 6 4.2920 0.0080 0.0002 6 6 3.6160 -1.2064 0.0002 7 8 4.0244 -2.4901 0.0058 8 6 2.9685 -3.3304 0.0010 9 6 3.0553 -4.7977 0.0023 10 8 2.0395 -5.4671 0.0032 11 7 4.2603 -5.4014 0.0025 12 6 4.3468 -6.8639 0.0044 13 1 3.4993 -7.3039 -0.5209 14 6 5.6899 -7.3423 -0.6078 15 6 6.6712 -7.2250 0.5775 16 7 5.8717 -7.2561 1.8109 17 6 6.3650 -7.1573 3.0845 18 1 5.6919 -7.1915 3.9284 19 6 7.7301 -7.0132 3.2908 20 7 8.5503 -6.9710 2.2623 21 14 8.4030 -6.8777 5.0281 22 1 7.2826 -6.9516 6.0001 23 1 9.3508 -7.9928 5.2802 24 1 9.1105 -5.5816 5.1853 25 6 4.4515 -7.4176 1.4497 26 6 1.8136 -2.6161 0.0007 27 6 2.2083 -1.2078 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6521 2.1163 -0.0005 32 1 4.1102 2.1306 0.0009 33 1 5.3719 0.0262 0.0002 34 1 5.0703 -4.8677 0.0015 35 1 5.9944 -6.6904 -1.4265 36 1 5.6160 -8.3756 -0.9465 37 1 7.2184 -6.2844 0.5141 38 1 7.3700 -8.0616 0.5674 39 1 9.5042 -6.8699 2.4064 40 1 4.1708 -8.4704 1.4763 41 1 3.8204 -6.8387 2.1239 42 1 0.8073 -3.0084 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016369055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:27 Heat of formation + Delta-G solvation = -1.301056 kcal Electronic energy + Delta-G solvation = -25482.357093 eV Core-core repulsion = 21814.578001 eV Total energy + Delta-G solvation = -3667.779092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.60249 -40.95963 -39.18676 -38.86728 -35.55449 -34.37930 -33.74503 -32.62619 -31.31626 -30.69374 -29.04121 -27.79303 -26.56922 -25.05720 -23.73442 -22.29534 -21.91256 -21.65684 -21.39947 -19.57333 -18.81221 -18.22656 -17.57575 -17.45531 -16.97149 -16.68692 -16.10191 -15.96898 -15.59004 -15.45415 -14.99002 -14.72665 -14.48418 -14.24437 -14.09045 -14.06909 -13.87159 -13.61312 -13.22217 -12.92554 -12.85520 -12.67740 -12.56032 -12.36722 -12.18493 -12.01655 -11.95010 -11.85541 -11.64085 -11.47658 -11.23686 -10.75594 -10.28274 -9.67952 -9.18514 -8.88822 -7.87376 -5.21778 -0.52746 0.31103 0.75039 1.36747 1.43927 1.44069 1.54538 1.94936 2.06060 2.47109 2.64869 3.29177 3.32672 3.52949 3.63457 3.74103 3.84273 3.96601 4.01715 4.11725 4.15776 4.27708 4.37305 4.50132 4.62797 4.68461 4.71828 4.74920 4.81664 4.84256 4.91394 4.97539 5.00318 5.23104 5.24169 5.35107 5.38489 5.42241 5.51211 5.59685 5.64751 5.74254 5.99715 6.17797 6.34420 6.86871 7.09410 7.74786 8.38509 9.22761 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.003421 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.328791 B = 8182.555039 C = 9197.636661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.033 4.033 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.137 4.137 6 C 0.047 3.953 7 O -0.200 6.200 8 C -0.049 4.049 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.689 5.689 12 C 0.137 3.863 13 H 0.115 0.885 14 C -0.133 4.133 15 C 0.182 3.818 16 N -0.622 5.622 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.121 3.879 26 C -0.104 4.104 27 C -0.165 4.165 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.409 0.591 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.247 0.753 40 H 0.042 0.958 41 H 0.028 0.972 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 17.218 -8.963 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.159 4.159 4 C -0.083 4.083 5 C -0.155 4.155 6 C -0.001 4.001 7 O -0.102 6.102 8 C -0.098 4.098 9 C 0.386 3.614 10 O -0.428 6.428 11 N -0.337 5.337 12 C 0.032 3.968 13 H 0.133 0.867 14 C -0.172 4.172 15 C 0.057 3.943 16 N -0.349 5.349 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.005 4.005 26 C -0.124 4.124 27 C -0.166 4.166 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.162 0.838 34 H 0.244 0.756 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.028 16.627 -8.860 23.489 hybrid contribution 1.296 -0.200 1.146 1.742 sum -12.732 16.427 -7.714 22.169 Atomic orbital electron populations 1.20901 0.88668 1.04230 1.03563 1.19584 0.97708 0.90166 0.95912 1.21158 0.94366 0.98249 1.02117 1.21471 0.94392 0.97494 0.94949 1.20384 1.01396 0.87463 1.06273 1.20326 0.93812 0.83869 1.02076 1.84014 1.34440 1.15051 1.76705 1.21860 0.86429 0.90312 1.11195 1.16788 0.84069 0.83851 0.76650 1.90819 1.35578 1.63627 1.52812 1.45801 1.07849 1.08196 1.71821 1.22195 0.99604 0.78694 0.96299 0.86679 1.23092 0.93247 1.02971 0.97859 1.20972 0.91482 0.98288 0.83520 1.44727 1.01810 1.86034 1.02338 1.19400 0.91410 1.42462 0.83818 0.90799 1.25554 0.96203 1.02514 1.01125 1.70157 1.02267 1.57683 1.29387 0.85064 0.78050 0.76844 0.79694 1.19558 1.21665 1.21818 1.22137 0.85942 0.97862 0.94540 1.22917 0.98984 0.90711 0.99810 1.19990 0.92989 0.93965 1.09683 0.89894 0.88712 0.91458 0.81656 0.80965 0.83835 0.75594 0.89074 0.88306 0.96566 0.96911 0.94339 0.94029 0.95333 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.96 71.23 0.71 -0.74 16 2 C -0.03 -0.61 5.88 -19.89 -0.12 -0.73 16 3 C -0.14 -1.95 9.63 22.03 0.21 -1.74 16 4 C -0.07 -0.95 10.01 22.31 0.22 -0.72 16 5 C -0.14 -2.90 10.07 22.35 0.23 -2.67 16 6 C 0.05 1.31 7.41 23.07 0.17 1.48 16 7 O -0.20 -6.52 10.28 -12.95 -0.13 -6.65 16 8 C -0.05 -1.57 7.07 24.00 0.17 -1.40 16 9 C 0.60 21.17 7.79 86.53 0.67 21.84 16 10 O -0.55 -21.01 16.46 -4.20 -0.07 -21.08 16 11 N -0.69 -24.29 5.19 -439.28 -2.28 -26.57 16 12 C 0.14 4.84 3.43 46.46 0.16 5.00 16 13 H 0.12 3.68 7.54 -2.39 -0.02 3.66 16 14 C -0.13 -4.58 6.54 31.78 0.21 -4.37 16 15 C 0.18 8.73 5.37 86.73 0.47 9.19 16 16 N -0.62 -32.14 3.39 -691.56 -2.35 -34.49 16 17 C -0.24 -13.85 10.28 84.03 0.86 -12.98 16 18 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 20 N -0.95 -56.48 10.31 21.65 0.22 -56.25 16 21 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 C 0.12 5.21 6.95 86.93 0.60 5.81 16 26 C -0.10 -2.87 10.52 23.79 0.25 -2.62 16 27 C -0.17 -4.20 6.15 -20.23 -0.12 -4.33 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.71 8.08 -2.38 -0.02 0.69 16 30 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16 31 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.41 14.65 8.38 -92.71 -0.78 13.87 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.02 0.86 7.38 -2.38 -0.02 0.84 16 38 H 0.01 0.68 7.50 -2.38 -0.02 0.67 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -72.14 354.91 2.85 -69.29 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.27 Total: 19.22 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.16 Total: 8.00 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.40 Total: -117.32 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.20 Total: -27.73 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.14 2.85 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016369055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds