Wall clock time and date at job start Tue Mar 31 2020 10:40:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.36665 * 120.14885 * 2 1
4 4 C 1.38795 * 120.44455 * 179.97438 * 3 2 1
5 5 C 1.37835 * 120.74383 * 0.04178 * 4 3 2
6 6 C 1.38985 * 119.85647 * 359.95971 * 5 4 3
7 7 O 1.34714 * 133.24799 * 180.34597 * 6 5 4
8 8 C 1.34944 * 110.86418 * 180.08323 * 7 6 5
9 9 C 1.46982 * 125.12537 * 179.86930 * 8 7 6
10 10 O 1.21653 * 119.99708 * 179.69172 * 9 8 7
11 11 N 1.34776 * 119.99968 * 359.69854 * 9 8 7
12 12 C 1.46501 * 119.99796 * 179.97438 * 11 9 8
13 13 H 1.08993 * 110.88715 * 31.11705 * 12 11 9
14 14 C 1.55159 * 111.00248 * 155.00033 * 12 11 9
15 15 C 1.54320 * 102.94349 * 82.57245 * 14 12 11
16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12
17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14
18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15
19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15
20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17
23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17
24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17
25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14
26 26 C 1.35802 * 109.74915 * 359.60573 * 8 7 6
27 27 C 1.39666 * 120.14489 * 179.97438 * 2 1 3
28 28 H 1.08996 * 109.47545 * 270.02671 * 1 2 3
29 29 H 1.09009 * 109.46960 * 30.02625 * 1 2 3
30 30 H 1.08995 * 109.47123 * 150.01710 * 1 2 3
31 31 H 1.07998 * 119.77095 * 359.97124 * 3 2 1
32 32 H 1.08001 * 119.62020 * 180.02562 * 4 3 2
33 33 H 1.08000 * 120.06920 * 179.97438 * 5 4 3
34 34 H 0.97002 * 120.00333 * 359.97438 * 11 9 8
35 35 H 1.08996 * 110.71852 * 324.20747 * 14 12 11
36 36 H 1.08998 * 110.86977 * 201.00616 * 14 12 11
37 37 H 1.09010 * 109.88205 * 262.77471 * 15 14 12
38 38 H 1.09004 * 110.01290 * 141.68524 * 15 14 12
39 39 H 0.96998 * 120.00243 * 179.97438 * 20 19 17
40 40 H 1.08996 * 110.36244 * 94.48455 * 25 16 15
41 41 H 1.08997 * 110.36930 * 216.80538 * 25 16 15
42 42 H 1.07999 * 126.96200 * 180.19361 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1934 1.1818 0.0000
4 6 3.5813 1.1889 0.0005
5 6 4.2920 0.0080 0.0002
6 6 3.6160 -1.2064 0.0002
7 8 4.0244 -2.4901 0.0058
8 6 2.9685 -3.3304 0.0010
9 6 3.0553 -4.7977 0.0023
10 8 2.0395 -5.4671 0.0032
11 7 4.2603 -5.4014 0.0025
12 6 4.3468 -6.8639 0.0044
13 1 3.4993 -7.3039 -0.5209
14 6 5.6899 -7.3423 -0.6078
15 6 6.6712 -7.2250 0.5775
16 7 5.8717 -7.2561 1.8109
17 6 6.3650 -7.1573 3.0845
18 1 5.6919 -7.1915 3.9284
19 6 7.7301 -7.0132 3.2908
20 7 8.5503 -6.9710 2.2623
21 14 8.4030 -6.8777 5.0281
22 1 7.2826 -6.9516 6.0001
23 1 9.3508 -7.9928 5.2802
24 1 9.1105 -5.5816 5.1853
25 6 4.4515 -7.4176 1.4497
26 6 1.8136 -2.6161 0.0007
27 6 2.2083 -1.2078 0.0005
28 1 -0.3634 0.0005 1.0276
29 1 -0.3633 0.8898 -0.5143
30 1 -0.3633 -0.8901 -0.5135
31 1 1.6521 2.1163 -0.0005
32 1 4.1102 2.1306 0.0009
33 1 5.3719 0.0262 0.0002
34 1 5.0703 -4.8677 0.0015
35 1 5.9944 -6.6904 -1.4265
36 1 5.6160 -8.3756 -0.9465
37 1 7.2184 -6.2844 0.5141
38 1 7.3700 -8.0616 0.5674
39 1 9.5042 -6.8699 2.4064
40 1 4.1708 -8.4704 1.4763
41 1 3.8204 -6.8387 2.1239
42 1 0.8073 -3.0084 0.0003
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001016369055.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:27
Heat of formation + Delta-G solvation = -1.301056 kcal
Electronic energy + Delta-G solvation = -25482.357093 eV
Core-core repulsion = 21814.578001 eV
Total energy + Delta-G solvation = -3667.779092 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.60249 -40.95963 -39.18676 -38.86728 -35.55449 -34.37930 -33.74503 -32.62619
-31.31626 -30.69374 -29.04121 -27.79303 -26.56922 -25.05720 -23.73442 -22.29534
-21.91256 -21.65684 -21.39947 -19.57333 -18.81221 -18.22656 -17.57575 -17.45531
-16.97149 -16.68692 -16.10191 -15.96898 -15.59004 -15.45415 -14.99002 -14.72665
-14.48418 -14.24437 -14.09045 -14.06909 -13.87159 -13.61312 -13.22217 -12.92554
-12.85520 -12.67740 -12.56032 -12.36722 -12.18493 -12.01655 -11.95010 -11.85541
-11.64085 -11.47658 -11.23686 -10.75594 -10.28274 -9.67952 -9.18514 -8.88822
-7.87376 -5.21778 -0.52746 0.31103 0.75039 1.36747 1.43927 1.44069
1.54538 1.94936 2.06060 2.47109 2.64869 3.29177 3.32672 3.52949
3.63457 3.74103 3.84273 3.96601 4.01715 4.11725 4.15776 4.27708
4.37305 4.50132 4.62797 4.68461 4.71828 4.74920 4.81664 4.84256
4.91394 4.97539 5.00318 5.23104 5.24169 5.35107 5.38489 5.42241
5.51211 5.59685 5.64751 5.74254 5.99715 6.17797 6.34420 6.86871
7.09410 7.74786 8.38509 9.22761
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.014903 B = 0.003421 C = 0.003044
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1878.328791 B = 8182.555039 C = 9197.636661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.033 4.033
3 C -0.141 4.141
4 C -0.065 4.065
5 C -0.137 4.137
6 C 0.047 3.953
7 O -0.200 6.200
8 C -0.049 4.049
9 C 0.600 3.400
10 O -0.548 6.548
11 N -0.689 5.689
12 C 0.137 3.863
13 H 0.115 0.885
14 C -0.133 4.133
15 C 0.182 3.818
16 N -0.622 5.622
17 C -0.242 4.242
18 H 0.074 0.926
19 C -0.061 4.061
20 N -0.946 5.946
21 Si 0.975 3.025
22 H -0.271 1.271
23 H -0.290 1.290
24 H -0.291 1.291
25 C 0.121 3.879
26 C -0.104 4.104
27 C -0.165 4.165
28 H 0.083 0.917
29 H 0.094 0.906
30 H 0.066 0.934
31 H 0.166 0.834
32 H 0.173 0.827
33 H 0.144 0.856
34 H 0.409 0.591
35 H 0.091 0.909
36 H 0.098 0.902
37 H 0.016 0.984
38 H 0.013 0.987
39 H 0.247 0.753
40 H 0.042 0.958
41 H 0.028 0.972
42 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.797 17.218 -8.963 23.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.034 4.034
3 C -0.159 4.159
4 C -0.083 4.083
5 C -0.155 4.155
6 C -0.001 4.001
7 O -0.102 6.102
8 C -0.098 4.098
9 C 0.386 3.614
10 O -0.428 6.428
11 N -0.337 5.337
12 C 0.032 3.968
13 H 0.133 0.867
14 C -0.172 4.172
15 C 0.057 3.943
16 N -0.349 5.349
17 C -0.371 4.371
18 H 0.092 0.908
19 C -0.254 4.254
20 N -0.595 5.595
21 Si 0.803 3.197
22 H -0.196 1.196
23 H -0.217 1.217
24 H -0.218 1.218
25 C -0.005 4.005
26 C -0.124 4.124
27 C -0.166 4.166
28 H 0.101 0.899
29 H 0.113 0.887
30 H 0.085 0.915
31 H 0.183 0.817
32 H 0.190 0.810
33 H 0.162 0.838
34 H 0.244 0.756
35 H 0.109 0.891
36 H 0.117 0.883
37 H 0.034 0.966
38 H 0.031 0.969
39 H 0.057 0.943
40 H 0.060 0.940
41 H 0.047 0.953
42 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -14.028 16.627 -8.860 23.489
hybrid contribution 1.296 -0.200 1.146 1.742
sum -12.732 16.427 -7.714 22.169
Atomic orbital electron populations
1.20901 0.88668 1.04230 1.03563 1.19584 0.97708 0.90166 0.95912
1.21158 0.94366 0.98249 1.02117 1.21471 0.94392 0.97494 0.94949
1.20384 1.01396 0.87463 1.06273 1.20326 0.93812 0.83869 1.02076
1.84014 1.34440 1.15051 1.76705 1.21860 0.86429 0.90312 1.11195
1.16788 0.84069 0.83851 0.76650 1.90819 1.35578 1.63627 1.52812
1.45801 1.07849 1.08196 1.71821 1.22195 0.99604 0.78694 0.96299
0.86679 1.23092 0.93247 1.02971 0.97859 1.20972 0.91482 0.98288
0.83520 1.44727 1.01810 1.86034 1.02338 1.19400 0.91410 1.42462
0.83818 0.90799 1.25554 0.96203 1.02514 1.01125 1.70157 1.02267
1.57683 1.29387 0.85064 0.78050 0.76844 0.79694 1.19558 1.21665
1.21818 1.22137 0.85942 0.97862 0.94540 1.22917 0.98984 0.90711
0.99810 1.19990 0.92989 0.93965 1.09683 0.89894 0.88712 0.91458
0.81656 0.80965 0.83835 0.75594 0.89074 0.88306 0.96566 0.96911
0.94339 0.94029 0.95333 0.80122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.45 9.96 71.23 0.71 -0.74 16
2 C -0.03 -0.61 5.88 -19.89 -0.12 -0.73 16
3 C -0.14 -1.95 9.63 22.03 0.21 -1.74 16
4 C -0.07 -0.95 10.01 22.31 0.22 -0.72 16
5 C -0.14 -2.90 10.07 22.35 0.23 -2.67 16
6 C 0.05 1.31 7.41 23.07 0.17 1.48 16
7 O -0.20 -6.52 10.28 -12.95 -0.13 -6.65 16
8 C -0.05 -1.57 7.07 24.00 0.17 -1.40 16
9 C 0.60 21.17 7.79 86.53 0.67 21.84 16
10 O -0.55 -21.01 16.46 -4.20 -0.07 -21.08 16
11 N -0.69 -24.29 5.19 -439.28 -2.28 -26.57 16
12 C 0.14 4.84 3.43 46.46 0.16 5.00 16
13 H 0.12 3.68 7.54 -2.39 -0.02 3.66 16
14 C -0.13 -4.58 6.54 31.78 0.21 -4.37 16
15 C 0.18 8.73 5.37 86.73 0.47 9.19 16
16 N -0.62 -32.14 3.39 -691.56 -2.35 -34.49 16
17 C -0.24 -13.85 10.28 84.03 0.86 -12.98 16
18 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16
19 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16
20 N -0.95 -56.48 10.31 21.65 0.22 -56.25 16
21 Si 0.97 46.52 29.55 68.60 2.03 48.55 16
22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
25 C 0.12 5.21 6.95 86.93 0.60 5.81 16
26 C -0.10 -2.87 10.52 23.79 0.25 -2.62 16
27 C -0.17 -4.20 6.15 -20.23 -0.12 -4.33 16
28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.09 0.71 8.08 -2.38 -0.02 0.69 16
30 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16
31 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16
32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16
33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16
34 H 0.41 14.65 8.38 -92.71 -0.78 13.87 16
35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16
36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16
37 H 0.02 0.86 7.38 -2.38 -0.02 0.84 16
38 H 0.01 0.68 7.50 -2.38 -0.02 0.67 16
39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16
40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16
Total: -1.00 -72.14 354.91 2.85 -69.29
By element:
Atomic # 1 Polarization: 18.95 SS G_CDS: 0.27 Total: 19.22 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: 5.16 Total: 8.00 kcal
Atomic # 7 Polarization: -112.91 SS G_CDS: -4.40 Total: -117.32 kcal
Atomic # 8 Polarization: -27.53 SS G_CDS: -0.20 Total: -27.73 kcal
Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal
Total: -72.14 2.85 -69.29 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016369055.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal
(2) G-P(sol) polarization free energy of solvation -72.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.301 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds