Wall clock time and date at job start Tue Mar 31 2020 10:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37883 * 120.01455 * 2 1 4 4 C 1.38640 * 120.65274 * 180.02562 * 3 2 1 5 5 C 1.37878 * 120.20481 * 359.97204 * 4 3 2 6 6 C 1.39071 * 119.62774 * 0.02656 * 5 4 3 7 7 C 1.47655 * 134.26925 * 179.97438 * 6 5 4 8 8 C 1.47077 * 127.14091 * 0.02562 * 7 6 5 9 9 O 1.21652 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00246 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.64937 * 0.02562 * 10 8 7 12 12 C 1.54319 * 107.27132 * 178.89476 * 11 10 8 13 13 C 1.55150 * 102.94588 * 337.80878 * 12 11 10 14 14 H 1.09006 * 111.00300 * 277.39064 * 13 12 11 15 15 N 1.46496 * 111.00982 * 153.57493 * 13 12 11 16 16 C 1.36934 * 120.00548 * 154.99761 * 15 13 12 17 17 H 1.08004 * 119.99288 * 0.02562 * 16 15 13 18 18 C 1.38805 * 120.00389 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00257 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47428 * 125.64709 * 179.97438 * 10 8 7 25 25 C 1.36052 * 105.72174 * 180.25974 * 7 6 5 26 26 O 1.33810 * 109.86017 * 359.60569 * 25 7 6 27 27 C 1.34912 * 111.34922 * 0.41855 * 26 25 7 28 28 H 1.09000 * 109.47405 * 90.00288 * 1 2 3 29 29 H 1.09005 * 109.47182 * 210.00352 * 1 2 3 30 30 H 1.09004 * 109.47227 * 330.00272 * 1 2 3 31 31 H 1.08001 * 119.66952 * 0.03605 * 3 2 1 32 32 H 1.08005 * 119.89293 * 180.02562 * 4 3 2 33 33 H 1.07991 * 120.19056 * 180.02562 * 5 4 3 34 34 H 1.09009 * 109.88120 * 59.47714 * 11 10 8 35 35 H 1.09000 * 109.88178 * 298.31671 * 11 10 8 36 36 H 1.09007 * 110.72211 * 219.44221 * 12 11 10 37 37 H 1.09001 * 110.71870 * 96.17609 * 12 11 10 38 38 H 0.96999 * 119.99694 * 335.00285 * 15 13 12 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08993 * 110.36761 * 85.33643 * 24 10 8 41 41 H 1.08999 * 110.36204 * 323.00792 * 24 10 8 42 42 H 1.08004 * 125.06950 * 179.75593 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1939 0.0000 4 6 3.5831 1.2094 -0.0005 5 6 4.2900 0.0256 -0.0005 6 6 3.6045 -1.1845 -0.0005 7 6 4.0165 -2.6024 -0.0009 8 6 5.3901 -3.1280 -0.0010 9 8 6.3348 -2.3614 -0.0012 10 7 5.6024 -4.4590 -0.0009 11 6 4.5577 -5.4933 -0.0012 12 6 5.2686 -6.8627 -0.0293 13 6 6.6637 -6.5181 -0.6143 14 1 6.6296 -6.4683 -1.7027 15 7 7.6732 -7.4808 -0.1669 16 6 8.7993 -7.6907 -0.9173 17 1 8.9432 -7.1462 -1.8389 18 6 9.7555 -8.6033 -0.4937 19 7 10.8381 -8.8047 -1.2148 20 14 9.5067 -9.5445 1.1006 21 1 10.0992 -8.7777 2.2258 22 1 8.0538 -9.7344 1.3417 23 1 10.1694 -10.8698 1.0015 24 6 6.9209 -5.1187 -0.0015 25 6 2.8618 -3.3218 -0.0065 26 8 1.8104 -2.4940 -0.0009 27 6 2.2018 -1.2030 -0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6516 2.1263 0.0006 32 1 4.1109 2.1517 -0.0001 33 1 5.3698 0.0379 -0.0005 34 1 3.9282 -5.3842 -0.8845 35 1 3.9519 -5.4086 0.9010 36 1 4.7390 -7.5590 -0.6797 37 1 5.3624 -7.2693 0.9776 38 1 7.5440 -7.9696 0.6609 39 1 11.5065 -9.4422 -0.9185 40 1 7.2978 -5.2140 1.0167 41 1 7.6250 -4.5587 -0.6168 42 1 2.8025 -4.4002 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018972800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:33 Heat of formation + Delta-G solvation = 20.942451 kcal Electronic energy + Delta-G solvation = -25258.277252 eV Core-core repulsion = 21591.462711 eV Total energy + Delta-G solvation = -3666.814541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.83762 -39.75978 -38.34787 -37.36209 -34.44354 -33.79973 -32.09074 -31.43546 -30.09264 -29.95457 -27.79538 -27.16152 -24.91398 -23.30161 -22.79307 -22.29962 -21.76874 -20.31672 -19.16973 -18.15636 -17.73784 -16.95967 -16.63793 -16.15515 -15.94279 -15.82588 -15.00807 -14.58666 -14.52378 -14.02457 -13.87649 -13.78135 -13.64238 -13.26590 -13.15715 -12.71610 -12.67619 -12.54239 -12.47749 -12.13861 -11.97075 -11.80726 -11.31703 -11.21074 -10.97364 -10.84990 -10.58888 -10.21618 -10.14020 -9.92068 -9.68220 -9.09953 -8.88721 -8.55454 -8.35036 -7.43845 -5.86445 -3.25354 0.52941 1.06883 1.56762 2.37799 2.99120 3.17743 3.30145 3.33624 3.39817 3.55409 4.13779 4.24831 4.49571 4.49803 4.58398 4.62996 4.76174 4.91543 4.95611 5.01782 5.11678 5.15540 5.20802 5.26376 5.28341 5.45340 5.48496 5.54531 5.63338 5.71781 5.78440 5.94044 6.03518 6.04983 6.13469 6.15662 6.23495 6.34659 6.37596 6.47363 6.67566 6.81653 7.59424 7.87190 8.24551 8.31742 9.07711 9.79409 9.96580 11.31068 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.002666 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.123274 B =10499.591567 C =11071.918602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.098 4.098 4 C -0.130 4.130 5 C -0.065 4.065 6 C -0.088 4.088 7 C -0.218 4.218 8 C 0.596 3.404 9 O -0.535 6.535 10 N -0.610 5.610 11 C 0.090 3.910 12 C -0.144 4.144 13 C 0.177 3.823 14 H 0.078 0.922 15 N -0.734 5.734 16 C -0.255 4.255 17 H 0.093 0.907 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.276 1.276 23 H -0.290 1.290 24 C 0.084 3.916 25 C 0.048 3.952 26 O -0.183 6.183 27 C 0.045 3.955 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.365 0.635 39 H 0.261 0.739 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.682 15.529 3.594 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.148 4.148 5 C -0.083 4.083 6 C -0.089 4.089 7 C -0.222 4.222 8 C 0.386 3.614 9 O -0.413 6.413 10 N -0.344 5.344 11 C -0.033 4.033 12 C -0.183 4.183 13 C 0.065 3.935 14 H 0.096 0.904 15 N -0.375 5.375 16 C -0.385 4.385 17 H 0.111 0.889 18 C -0.187 4.187 19 N -0.574 5.574 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.202 1.202 23 H -0.216 1.216 24 C -0.041 4.041 25 C -0.020 4.020 26 O -0.083 6.083 27 C -0.002 4.002 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -23.241 15.912 3.405 28.371 hybrid contribution 0.181 -0.847 1.184 1.467 sum -23.059 15.066 4.589 27.924 Atomic orbital electron populations 1.20737 0.90296 1.03117 1.02678 1.18771 0.96168 0.88297 1.04241 1.20840 0.94217 0.96348 1.00195 1.21097 0.93912 0.98061 1.01713 1.20737 1.01049 0.89798 0.96681 1.19413 0.92311 0.92729 1.04494 1.21022 0.94023 0.92672 1.14503 1.16716 0.86915 0.80769 0.77024 1.90790 1.43495 1.56228 1.50821 1.48341 1.09515 1.04030 1.72482 1.22341 0.91548 0.88798 1.00659 1.22996 0.97903 0.94627 1.02773 1.21285 0.86974 0.87380 0.97819 0.90402 1.42637 1.21767 1.46541 1.26584 1.19081 0.94811 1.20134 1.04451 0.88928 1.24695 0.96425 0.99298 0.98257 1.69702 1.10276 1.38424 1.39012 0.86559 0.77421 0.79981 0.84575 1.20929 1.20240 1.21582 1.23389 0.83127 0.95538 1.02053 1.25394 0.83550 0.96436 0.96611 1.83855 1.34845 1.14585 1.74997 1.19390 0.92370 0.83473 1.04925 0.90937 0.91355 0.91052 0.84738 0.85025 0.84376 0.91073 0.91315 0.89603 0.90433 0.80202 0.92848 0.91371 0.90284 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.07 -0.72 5.89 -104.50 -0.62 -1.33 16 3 C -0.10 -0.84 9.66 -39.56 -0.38 -1.22 16 4 C -0.13 -1.26 10.04 -39.56 -0.40 -1.65 16 5 C -0.06 -0.82 9.88 -39.40 -0.39 -1.21 16 6 C -0.09 -1.21 6.29 -104.98 -0.66 -1.87 16 7 C -0.22 -3.01 6.28 -103.25 -0.65 -3.65 16 8 C 0.60 9.86 7.83 -12.67 -0.10 9.76 16 9 O -0.54 -10.77 16.54 5.23 0.09 -10.68 16 10 N -0.61 -9.15 3.33 -171.91 -0.57 -9.72 16 11 C 0.09 0.96 5.00 -3.07 -0.02 0.95 16 12 C -0.14 -1.81 6.60 -24.90 -0.16 -1.98 16 13 C 0.18 3.11 3.71 -65.79 -0.24 2.87 16 14 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 15 N -0.73 -16.18 5.05 -51.36 -0.26 -16.44 16 16 C -0.26 -6.90 10.44 -15.06 -0.16 -7.06 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16 20 Si 0.88 21.26 27.74 -169.99 -4.71 16.54 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.11 6.52 56.52 0.37 -5.75 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.08 1.48 6.60 -2.53 -0.02 1.46 16 25 C 0.05 0.50 10.57 29.95 0.32 0.82 16 26 O -0.18 -2.04 10.53 5.31 0.06 -1.99 16 27 C 0.04 0.54 7.05 -38.56 -0.27 0.27 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.87 7.54 -52.49 -0.40 1.48 16 34 H 0.07 0.60 6.86 -51.92 -0.36 0.24 16 35 H 0.07 0.57 7.06 -51.93 -0.37 0.21 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 38 H 0.36 7.81 5.62 -40.82 -0.23 7.58 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 42 H 0.23 1.54 4.35 -52.48 -0.23 1.31 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -34.16 347.89 -8.24 -42.40 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.37 Total: 6.44 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.48 Total: -4.07 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.06 Total: -53.88 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.14 Total: -12.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.16 -8.24 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018972800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.340 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds