Wall clock time and date at job start Tue Mar 31 2020 10:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37883 * 120.01455 * 2 1 4 4 C 1.38640 * 120.65274 * 180.02562 * 3 2 1 5 5 C 1.37878 * 120.20481 * 359.97204 * 4 3 2 6 6 C 1.39071 * 119.62774 * 0.02656 * 5 4 3 7 7 C 1.47655 * 134.26925 * 179.97438 * 6 5 4 8 8 C 1.47077 * 127.14091 * 0.02562 * 7 6 5 9 9 O 1.21652 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00246 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.64937 * 0.02562 * 10 8 7 12 12 C 1.54319 * 107.27132 * 178.89476 * 11 10 8 13 13 C 1.55150 * 102.94588 * 337.80878 * 12 11 10 14 14 H 1.09006 * 111.00300 * 277.39064 * 13 12 11 15 15 N 1.46496 * 111.00982 * 153.57493 * 13 12 11 16 16 C 1.36934 * 120.00548 * 154.99761 * 15 13 12 17 17 H 1.08004 * 119.99288 * 0.02562 * 16 15 13 18 18 C 1.38805 * 120.00389 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00257 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47428 * 125.64709 * 179.97438 * 10 8 7 25 25 C 1.36052 * 105.72174 * 180.25974 * 7 6 5 26 26 O 1.33810 * 109.86017 * 359.60569 * 25 7 6 27 27 C 1.34912 * 111.34922 * 0.41855 * 26 25 7 28 28 H 1.09000 * 109.47405 * 90.00288 * 1 2 3 29 29 H 1.09005 * 109.47182 * 210.00352 * 1 2 3 30 30 H 1.09004 * 109.47227 * 330.00272 * 1 2 3 31 31 H 1.08001 * 119.66952 * 0.03605 * 3 2 1 32 32 H 1.08005 * 119.89293 * 180.02562 * 4 3 2 33 33 H 1.07991 * 120.19056 * 180.02562 * 5 4 3 34 34 H 1.09009 * 109.88120 * 59.47714 * 11 10 8 35 35 H 1.09000 * 109.88178 * 298.31671 * 11 10 8 36 36 H 1.09007 * 110.72211 * 219.44221 * 12 11 10 37 37 H 1.09001 * 110.71870 * 96.17609 * 12 11 10 38 38 H 0.96999 * 119.99694 * 335.00285 * 15 13 12 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08993 * 110.36761 * 85.33643 * 24 10 8 41 41 H 1.08999 * 110.36204 * 323.00792 * 24 10 8 42 42 H 1.08004 * 125.06950 * 179.75593 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1939 0.0000 4 6 3.5831 1.2094 -0.0005 5 6 4.2900 0.0256 -0.0005 6 6 3.6045 -1.1845 -0.0005 7 6 4.0165 -2.6024 -0.0009 8 6 5.3901 -3.1280 -0.0010 9 8 6.3348 -2.3614 -0.0012 10 7 5.6024 -4.4590 -0.0009 11 6 4.5577 -5.4933 -0.0012 12 6 5.2686 -6.8627 -0.0293 13 6 6.6637 -6.5181 -0.6143 14 1 6.6296 -6.4683 -1.7027 15 7 7.6732 -7.4808 -0.1669 16 6 8.7993 -7.6907 -0.9173 17 1 8.9432 -7.1462 -1.8389 18 6 9.7555 -8.6033 -0.4937 19 7 10.8381 -8.8047 -1.2148 20 14 9.5067 -9.5445 1.1006 21 1 10.0992 -8.7777 2.2258 22 1 8.0538 -9.7344 1.3417 23 1 10.1694 -10.8698 1.0015 24 6 6.9209 -5.1187 -0.0015 25 6 2.8618 -3.3218 -0.0065 26 8 1.8104 -2.4940 -0.0009 27 6 2.2018 -1.2030 -0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6516 2.1263 0.0006 32 1 4.1109 2.1517 -0.0001 33 1 5.3698 0.0379 -0.0005 34 1 3.9282 -5.3842 -0.8845 35 1 3.9519 -5.4086 0.9010 36 1 4.7390 -7.5590 -0.6797 37 1 5.3624 -7.2693 0.9776 38 1 7.5440 -7.9696 0.6609 39 1 11.5065 -9.4422 -0.9185 40 1 7.2978 -5.2140 1.0167 41 1 7.6250 -4.5587 -0.6168 42 1 2.8025 -4.4002 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018972800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:32 Heat of formation + Delta-G solvation = -2.144562 kcal Electronic energy + Delta-G solvation = -25259.278380 eV Core-core repulsion = 21591.462711 eV Total energy + Delta-G solvation = -3667.815669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.69954 -41.00167 -39.13568 -38.70532 -36.14093 -34.68898 -33.67241 -32.58048 -31.43800 -30.89275 -29.14076 -27.81004 -26.27883 -24.82314 -23.70943 -23.29405 -22.75202 -21.79403 -20.30256 -19.69168 -19.00552 -17.90116 -17.65578 -17.29971 -17.04361 -16.78379 -16.33576 -16.06846 -15.53653 -15.30982 -15.28765 -14.77185 -14.47492 -14.37447 -14.31089 -14.16449 -13.88745 -13.73195 -13.40382 -13.22962 -12.99530 -12.89276 -12.58344 -12.47949 -12.27928 -12.16751 -12.01041 -11.86936 -11.60679 -11.24317 -11.09112 -11.04573 -9.83060 -9.68996 -9.39932 -9.18998 -8.04921 -5.41794 -0.31022 0.24630 0.63550 1.37866 1.43160 1.49823 1.53023 1.83514 2.09286 2.47377 2.67126 3.21749 3.29419 3.33583 3.47545 3.69023 3.72336 3.81927 3.96681 4.07785 4.14514 4.27258 4.28806 4.29373 4.43119 4.44101 4.55160 4.56751 4.78725 4.79014 4.83159 4.91578 4.95993 5.13602 5.18650 5.25240 5.28155 5.29481 5.39406 5.46151 5.54705 5.73684 6.00516 6.18414 6.41134 7.00235 7.04119 7.76091 7.96546 9.16173 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.002666 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.123274 B =10499.591567 C =11071.918602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.095 4.095 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.260 4.260 8 C 0.592 3.408 9 O -0.591 6.591 10 N -0.608 5.608 11 C 0.083 3.917 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.065 0.935 15 N -0.735 5.735 16 C -0.240 4.240 17 H 0.053 0.947 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.958 3.042 21 H -0.283 1.283 22 H -0.238 1.238 23 H -0.296 1.296 24 C 0.091 3.909 25 C 0.090 3.910 26 O -0.177 6.177 27 C 0.027 3.973 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.174 0.826 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.372 0.628 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.857 15.465 5.196 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.113 4.113 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.264 4.264 8 C 0.383 3.617 9 O -0.473 6.473 10 N -0.341 5.341 11 C -0.038 4.038 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.083 0.917 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.071 0.929 18 C -0.255 4.255 19 N -0.633 5.633 20 Si 0.785 3.215 21 H -0.210 1.210 22 H -0.162 1.162 23 H -0.223 1.223 24 C -0.034 4.034 25 C 0.021 3.979 26 O -0.076 6.076 27 C -0.019 4.019 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.191 0.809 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.206 0.794 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -28.522 15.861 5.015 33.019 hybrid contribution 1.739 -0.665 0.594 1.954 sum -26.783 15.196 5.609 31.300 Atomic orbital electron populations 1.20820 0.87847 1.04278 1.03683 1.19298 0.97958 0.87657 1.02282 1.21301 0.93638 0.97655 0.98703 1.21426 0.94874 0.97790 0.99646 1.20741 1.00160 0.91311 0.99936 1.19711 0.93678 0.92997 1.05433 1.20818 0.93298 0.93598 1.18729 1.17180 0.87729 0.80724 0.76028 1.90750 1.45403 1.57661 1.53502 1.48319 1.09392 1.04451 1.71908 1.22746 0.90764 0.86092 1.04207 1.22943 0.93982 0.96256 1.03457 1.21444 0.89156 0.86191 0.97434 0.91683 1.42536 1.21264 1.47568 1.26391 1.19007 0.96337 1.18495 1.03258 0.92870 1.25593 0.96186 1.01140 1.02559 1.69903 1.11761 1.39931 1.41662 0.85370 0.79395 0.77541 0.79215 1.20994 1.16207 1.22309 1.22999 0.84312 0.95549 1.00589 1.25980 0.82034 0.97501 0.92335 1.83877 1.34696 1.14457 1.74549 1.19674 0.91685 0.84346 1.06186 0.89845 0.91412 0.88749 0.80876 0.82731 0.87068 0.87736 0.87395 0.86911 0.89324 0.79362 0.93248 0.92325 0.94213 0.71873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.07 -1.18 5.89 -19.78 -0.12 -1.30 16 3 C -0.10 -1.36 9.66 22.28 0.22 -1.15 16 4 C -0.12 -2.21 10.04 22.28 0.22 -1.99 16 5 C -0.10 -2.78 9.88 22.38 0.22 -2.56 16 6 C -0.12 -3.25 6.29 -20.09 -0.13 -3.38 16 7 C -0.26 -7.08 6.28 -18.98 -0.12 -7.20 16 8 C 0.59 20.24 7.83 86.56 0.68 20.92 16 9 O -0.59 -25.91 16.54 -4.20 -0.07 -25.98 16 10 N -0.61 -17.96 3.33 -816.04 -2.71 -20.67 16 11 C 0.08 1.44 5.00 86.73 0.43 1.87 16 12 C -0.13 -2.72 6.60 31.78 0.21 -2.51 16 13 C 0.17 5.82 3.71 46.38 0.17 6.00 16 14 H 0.07 2.42 8.09 -2.38 -0.02 2.40 16 15 N -0.74 -32.13 5.05 -316.39 -1.60 -33.73 16 16 C -0.24 -13.41 10.44 84.03 0.88 -12.53 16 17 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 18 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 19 N -0.98 -62.90 13.97 21.65 0.30 -62.60 16 20 Si 0.96 43.96 27.74 68.60 1.90 45.86 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.24 -9.34 6.52 99.48 0.65 -8.69 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 C 0.09 3.35 6.60 86.86 0.57 3.93 16 25 C 0.09 1.58 10.57 67.31 0.71 2.29 16 26 O -0.18 -3.40 10.53 -3.90 -0.04 -3.44 16 27 C 0.03 0.60 7.05 22.93 0.16 0.77 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 30 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 31 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.11 3.46 7.54 -2.92 -0.02 3.44 16 34 H 0.10 1.19 6.86 -2.38 -0.02 1.17 16 35 H 0.11 1.15 7.06 -2.39 -0.02 1.13 16 36 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 38 H 0.37 15.11 5.62 -92.71 -0.52 14.59 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 42 H 0.27 2.10 4.35 -2.91 -0.01 2.09 16 Total: -1.00 -83.14 347.89 3.56 -79.58 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.48 Total: 21.35 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.30 Total: -0.37 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.01 Total: -117.00 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.11 Total: -29.42 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Total: -83.14 3.56 -79.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018972800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.435 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds