Wall clock time and date at job start Tue Mar 31 2020 10:47:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.37883 * 120.01455 * 2 1
4 4 C 1.38640 * 120.65274 * 180.02562 * 3 2 1
5 5 C 1.37878 * 120.20481 * 359.97204 * 4 3 2
6 6 C 1.39071 * 119.62774 * 0.02656 * 5 4 3
7 7 C 1.47655 * 134.26925 * 179.97438 * 6 5 4
8 8 C 1.47077 * 127.14091 * 0.02562 * 7 6 5
9 9 O 1.21652 * 120.00052 * 359.97438 * 8 7 6
10 10 N 1.34780 * 120.00246 * 179.97438 * 8 7 6
11 11 C 1.47018 * 125.64937 * 0.02562 * 10 8 7
12 12 C 1.54319 * 107.27132 * 178.89476 * 11 10 8
13 13 C 1.55150 * 102.94588 * 337.80878 * 12 11 10
14 14 H 1.09006 * 111.00300 * 277.39064 * 13 12 11
15 15 N 1.46496 * 111.00982 * 153.57493 * 13 12 11
16 16 C 1.36934 * 120.00548 * 154.99761 * 15 13 12
17 17 H 1.08004 * 119.99288 * 0.02562 * 16 15 13
18 18 C 1.38805 * 120.00389 * 180.02562 * 16 15 13
19 19 N 1.31624 * 120.00257 * 180.02562 * 18 16 15
20 20 Si 1.86803 * 119.99929 * 359.97438 * 18 16 15
21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16
22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16
23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16
24 24 C 1.47428 * 125.64709 * 179.97438 * 10 8 7
25 25 C 1.36052 * 105.72174 * 180.25974 * 7 6 5
26 26 O 1.33810 * 109.86017 * 359.60569 * 25 7 6
27 27 C 1.34912 * 111.34922 * 0.41855 * 26 25 7
28 28 H 1.09000 * 109.47405 * 90.00288 * 1 2 3
29 29 H 1.09005 * 109.47182 * 210.00352 * 1 2 3
30 30 H 1.09004 * 109.47227 * 330.00272 * 1 2 3
31 31 H 1.08001 * 119.66952 * 0.03605 * 3 2 1
32 32 H 1.08005 * 119.89293 * 180.02562 * 4 3 2
33 33 H 1.07991 * 120.19056 * 180.02562 * 5 4 3
34 34 H 1.09009 * 109.88120 * 59.47714 * 11 10 8
35 35 H 1.09000 * 109.88178 * 298.31671 * 11 10 8
36 36 H 1.09007 * 110.72211 * 219.44221 * 12 11 10
37 37 H 1.09001 * 110.71870 * 96.17609 * 12 11 10
38 38 H 0.96999 * 119.99694 * 335.00285 * 15 13 12
39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16
40 40 H 1.08993 * 110.36761 * 85.33643 * 24 10 8
41 41 H 1.08999 * 110.36204 * 323.00792 * 24 10 8
42 42 H 1.08004 * 125.06950 * 179.75593 * 25 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1968 1.1939 0.0000
4 6 3.5831 1.2094 -0.0005
5 6 4.2900 0.0256 -0.0005
6 6 3.6045 -1.1845 -0.0005
7 6 4.0165 -2.6024 -0.0009
8 6 5.3901 -3.1280 -0.0010
9 8 6.3348 -2.3614 -0.0012
10 7 5.6024 -4.4590 -0.0009
11 6 4.5577 -5.4933 -0.0012
12 6 5.2686 -6.8627 -0.0293
13 6 6.6637 -6.5181 -0.6143
14 1 6.6296 -6.4683 -1.7027
15 7 7.6732 -7.4808 -0.1669
16 6 8.7993 -7.6907 -0.9173
17 1 8.9432 -7.1462 -1.8389
18 6 9.7555 -8.6033 -0.4937
19 7 10.8381 -8.8047 -1.2148
20 14 9.5067 -9.5445 1.1006
21 1 10.0992 -8.7777 2.2258
22 1 8.0538 -9.7344 1.3417
23 1 10.1694 -10.8698 1.0015
24 6 6.9209 -5.1187 -0.0015
25 6 2.8618 -3.3218 -0.0065
26 8 1.8104 -2.4940 -0.0009
27 6 2.2018 -1.2030 -0.0005
28 1 -0.3634 -0.0001 -1.0276
29 1 -0.3634 -0.8900 0.5139
30 1 -0.3634 0.8900 0.5138
31 1 1.6516 2.1263 0.0006
32 1 4.1109 2.1517 -0.0001
33 1 5.3698 0.0379 -0.0005
34 1 3.9282 -5.3842 -0.8845
35 1 3.9519 -5.4086 0.9010
36 1 4.7390 -7.5590 -0.6797
37 1 5.3624 -7.2693 0.9776
38 1 7.5440 -7.9696 0.6609
39 1 11.5065 -9.4422 -0.9185
40 1 7.2978 -5.2140 1.0167
41 1 7.6250 -4.5587 -0.6168
42 1 2.8025 -4.4002 -0.0121
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001018972800.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:32
Heat of formation + Delta-G solvation = -2.144562 kcal
Electronic energy + Delta-G solvation = -25259.278380 eV
Core-core repulsion = 21591.462711 eV
Total energy + Delta-G solvation = -3667.815669 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-43.69954 -41.00167 -39.13568 -38.70532 -36.14093 -34.68898 -33.67241 -32.58048
-31.43800 -30.89275 -29.14076 -27.81004 -26.27883 -24.82314 -23.70943 -23.29405
-22.75202 -21.79403 -20.30256 -19.69168 -19.00552 -17.90116 -17.65578 -17.29971
-17.04361 -16.78379 -16.33576 -16.06846 -15.53653 -15.30982 -15.28765 -14.77185
-14.47492 -14.37447 -14.31089 -14.16449 -13.88745 -13.73195 -13.40382 -13.22962
-12.99530 -12.89276 -12.58344 -12.47949 -12.27928 -12.16751 -12.01041 -11.86936
-11.60679 -11.24317 -11.09112 -11.04573 -9.83060 -9.68996 -9.39932 -9.18998
-8.04921 -5.41794 -0.31022 0.24630 0.63550 1.37866 1.43160 1.49823
1.53023 1.83514 2.09286 2.47377 2.67126 3.21749 3.29419 3.33583
3.47545 3.69023 3.72336 3.81927 3.96681 4.07785 4.14514 4.27258
4.28806 4.29373 4.43119 4.44101 4.55160 4.56751 4.78725 4.79014
4.83159 4.91578 4.95993 5.13602 5.18650 5.25240 5.28155 5.29481
5.39406 5.46151 5.54705 5.73684 6.00516 6.18414 6.41134 7.00235
7.04119 7.76091 7.96546 9.16173
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.032135 B = 0.002666 C = 0.002528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 871.123274 B =10499.591567 C =11071.918602
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.071 4.071
3 C -0.095 4.095
4 C -0.120 4.120
5 C -0.103 4.103
6 C -0.117 4.117
7 C -0.260 4.260
8 C 0.592 3.408
9 O -0.591 6.591
10 N -0.608 5.608
11 C 0.083 3.917
12 C -0.128 4.128
13 C 0.168 3.832
14 H 0.065 0.935
15 N -0.735 5.735
16 C -0.240 4.240
17 H 0.053 0.947
18 C -0.063 4.063
19 N -0.983 5.983
20 Si 0.958 3.042
21 H -0.283 1.283
22 H -0.238 1.238
23 H -0.296 1.296
24 C 0.091 3.909
25 C 0.090 3.910
26 O -0.177 6.177
27 C 0.027 3.973
28 H 0.083 0.917
29 H 0.067 0.933
30 H 0.094 0.906
31 H 0.174 0.826
32 H 0.155 0.845
33 H 0.111 0.889
34 H 0.105 0.895
35 H 0.108 0.892
36 H 0.113 0.887
37 H 0.088 0.912
38 H 0.372 0.628
39 H 0.259 0.741
40 H 0.058 0.942
41 H 0.039 0.961
42 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.857 15.465 5.196 33.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.072 4.072
3 C -0.113 4.113
4 C -0.137 4.137
5 C -0.121 4.121
6 C -0.118 4.118
7 C -0.264 4.264
8 C 0.383 3.617
9 O -0.473 6.473
10 N -0.341 5.341
11 C -0.038 4.038
12 C -0.166 4.166
13 C 0.058 3.942
14 H 0.083 0.917
15 N -0.378 5.378
16 C -0.371 4.371
17 H 0.071 0.929
18 C -0.255 4.255
19 N -0.633 5.633
20 Si 0.785 3.215
21 H -0.210 1.210
22 H -0.162 1.162
23 H -0.223 1.223
24 C -0.034 4.034
25 C 0.021 3.979
26 O -0.076 6.076
27 C -0.019 4.019
28 H 0.102 0.898
29 H 0.086 0.914
30 H 0.113 0.887
31 H 0.191 0.809
32 H 0.173 0.827
33 H 0.129 0.871
34 H 0.123 0.877
35 H 0.126 0.874
36 H 0.131 0.869
37 H 0.107 0.893
38 H 0.206 0.794
39 H 0.068 0.932
40 H 0.077 0.923
41 H 0.058 0.942
42 H 0.281 0.719
Dipole moment (debyes) X Y Z Total
from point charges -28.522 15.861 5.015 33.019
hybrid contribution 1.739 -0.665 0.594 1.954
sum -26.783 15.196 5.609 31.300
Atomic orbital electron populations
1.20820 0.87847 1.04278 1.03683 1.19298 0.97958 0.87657 1.02282
1.21301 0.93638 0.97655 0.98703 1.21426 0.94874 0.97790 0.99646
1.20741 1.00160 0.91311 0.99936 1.19711 0.93678 0.92997 1.05433
1.20818 0.93298 0.93598 1.18729 1.17180 0.87729 0.80724 0.76028
1.90750 1.45403 1.57661 1.53502 1.48319 1.09392 1.04451 1.71908
1.22746 0.90764 0.86092 1.04207 1.22943 0.93982 0.96256 1.03457
1.21444 0.89156 0.86191 0.97434 0.91683 1.42536 1.21264 1.47568
1.26391 1.19007 0.96337 1.18495 1.03258 0.92870 1.25593 0.96186
1.01140 1.02559 1.69903 1.11761 1.39931 1.41662 0.85370 0.79395
0.77541 0.79215 1.20994 1.16207 1.22309 1.22999 0.84312 0.95549
1.00589 1.25980 0.82034 0.97501 0.92335 1.83877 1.34696 1.14457
1.74549 1.19674 0.91685 0.84346 1.06186 0.89845 0.91412 0.88749
0.80876 0.82731 0.87068 0.87736 0.87395 0.86911 0.89324 0.79362
0.93248 0.92325 0.94213 0.71873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16
2 C -0.07 -1.18 5.89 -19.78 -0.12 -1.30 16
3 C -0.10 -1.36 9.66 22.28 0.22 -1.15 16
4 C -0.12 -2.21 10.04 22.28 0.22 -1.99 16
5 C -0.10 -2.78 9.88 22.38 0.22 -2.56 16
6 C -0.12 -3.25 6.29 -20.09 -0.13 -3.38 16
7 C -0.26 -7.08 6.28 -18.98 -0.12 -7.20 16
8 C 0.59 20.24 7.83 86.56 0.68 20.92 16
9 O -0.59 -25.91 16.54 -4.20 -0.07 -25.98 16
10 N -0.61 -17.96 3.33 -816.04 -2.71 -20.67 16
11 C 0.08 1.44 5.00 86.73 0.43 1.87 16
12 C -0.13 -2.72 6.60 31.78 0.21 -2.51 16
13 C 0.17 5.82 3.71 46.38 0.17 6.00 16
14 H 0.07 2.42 8.09 -2.38 -0.02 2.40 16
15 N -0.74 -32.13 5.05 -316.39 -1.60 -33.73 16
16 C -0.24 -13.41 10.44 84.03 0.88 -12.53 16
17 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16
18 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16
19 N -0.98 -62.90 13.97 21.65 0.30 -62.60 16
20 Si 0.96 43.96 27.74 68.60 1.90 45.86 16
21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16
22 H -0.24 -9.34 6.52 99.48 0.65 -8.69 16
23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16
24 C 0.09 3.35 6.60 86.86 0.57 3.93 16
25 C 0.09 1.58 10.57 67.31 0.71 2.29 16
26 O -0.18 -3.40 10.53 -3.90 -0.04 -3.44 16
27 C 0.03 0.60 7.05 22.93 0.16 0.77 16
28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
29 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16
30 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16
31 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16
32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16
33 H 0.11 3.46 7.54 -2.92 -0.02 3.44 16
34 H 0.10 1.19 6.86 -2.38 -0.02 1.17 16
35 H 0.11 1.15 7.06 -2.39 -0.02 1.13 16
36 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16
37 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16
38 H 0.37 15.11 5.62 -92.71 -0.52 14.59 16
39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16
40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
41 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16
42 H 0.27 2.10 4.35 -2.91 -0.01 2.09 16
Total: -1.00 -83.14 347.89 3.56 -79.58
By element:
Atomic # 1 Polarization: 20.87 SS G_CDS: 0.48 Total: 21.35 kcal
Atomic # 6 Polarization: -5.67 SS G_CDS: 5.30 Total: -0.37 kcal
Atomic # 7 Polarization: -112.99 SS G_CDS: -4.01 Total: -117.00 kcal
Atomic # 8 Polarization: -29.31 SS G_CDS: -0.11 Total: -29.42 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal
Total: -83.14 3.56 -79.58 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001018972800.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.435 kcal
(2) G-P(sol) polarization free energy of solvation -83.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds