Wall clock time and date at job start Tue Mar 31 2020 10:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37841 * 120.07215 * 2 1 4 4 C 1.38788 * 120.74466 * 179.97438 * 3 2 1 5 5 C 1.36665 * 120.44319 * 0.02562 * 4 3 2 6 6 C 1.39655 * 119.70852 * 359.97438 * 5 4 3 7 7 C 1.46255 * 134.19431 * 180.02562 * 6 5 4 8 8 C 1.35808 * 106.08133 * 179.28016 * 7 6 5 9 9 C 1.46979 * 125.13122 * 180.02562 * 8 7 6 10 10 O 1.21661 * 119.99512 * 0.62039 * 9 8 7 11 11 N 1.34778 * 120.00402 * 180.61805 * 9 8 7 12 12 C 1.46502 * 119.99893 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.85457 * 25.32755 * 12 11 9 14 14 C 1.53781 * 113.61397 * 156.53077 * 12 11 9 15 15 C 1.53784 * 87.07877 * 139.97591 * 14 12 11 16 16 H 1.08995 * 113.60968 * 220.01385 * 15 14 12 17 17 N 1.46497 * 113.61067 * 89.20344 * 15 14 12 18 18 C 1.36937 * 119.99914 * 154.99762 * 17 15 14 19 19 H 1.07994 * 120.00104 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99771 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00218 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47349 * 89.99962 * 22 20 18 24 24 H 1.48498 * 109.47033 * 210.00223 * 22 20 18 25 25 H 1.48503 * 109.46911 * 330.00026 * 22 20 18 26 26 C 1.53789 * 113.61076 * 254.13565 * 12 11 9 27 27 O 1.34945 * 109.74466 * 0.61823 * 8 7 6 28 28 C 1.34722 * 110.86376 * 359.43857 * 27 8 7 29 29 H 1.09002 * 109.47152 * 89.99900 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00000 * 1 2 3 31 31 H 1.09004 * 109.47113 * 209.99981 * 1 2 3 32 32 H 1.08001 * 119.62646 * 0.02865 * 3 2 1 33 33 H 1.08001 * 119.78122 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.14290 * 180.02562 * 5 4 3 35 35 H 1.08007 * 126.95657 * 359.94804 * 7 6 5 36 36 H 0.96992 * 119.99776 * 0.02562 * 11 9 8 37 37 H 1.08997 * 113.61231 * 254.52416 * 14 12 11 38 38 H 1.09000 * 113.61124 * 25.42977 * 14 12 11 39 39 H 0.96999 * 120.00512 * 334.99042 * 17 15 14 40 40 H 0.97000 * 120.00123 * 180.02562 * 21 20 18 41 41 H 1.08997 * 113.61491 * 334.56682 * 26 12 11 42 42 H 1.08998 * 113.61202 * 105.47025 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2092 0.0005 5 6 4.2918 0.0391 0.0005 6 6 3.6110 -1.1802 0.0006 7 6 4.0295 -2.5816 0.0010 8 6 2.8869 -3.3155 0.0171 9 6 2.8249 -4.7840 0.0240 10 8 3.8520 -5.4361 0.0265 11 7 1.6303 -5.4081 0.0277 12 6 1.5686 -6.8718 0.0351 13 1 2.4580 -7.3308 0.4667 14 6 0.2516 -7.4300 0.5996 15 6 0.3116 -8.4853 -0.5173 16 1 -0.6573 -8.6989 -0.9686 17 7 1.0434 -9.6973 -0.1407 18 6 0.7713 -10.8840 -0.7675 19 1 0.0170 -10.9265 -1.5392 20 6 1.4651 -12.0322 -0.4110 21 7 2.3840 -11.9805 0.5298 22 14 1.0934 -13.6512 -1.2656 23 1 1.9665 -13.7932 -2.4584 24 1 1.3481 -14.7752 -0.3291 25 1 -0.3299 -13.6722 -1.6887 26 6 1.1573 -7.4778 -1.3172 27 8 1.8169 -2.4933 0.0128 28 6 2.2035 -1.2027 0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6528 2.1253 0.0005 33 1 4.1109 2.1528 0.0001 34 1 5.3716 0.0575 0.0014 35 1 5.0423 -2.9568 0.0007 36 1 0.8115 -4.8881 0.0254 37 1 0.3486 -7.8484 1.6014 38 1 -0.5894 -6.7428 0.5063 39 1 1.7207 -9.6592 0.5526 40 1 2.8691 -12.7828 0.7787 41 1 0.5643 -6.8038 -1.9354 42 1 1.9843 -7.9347 -1.8605 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021097857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:57 Heat of formation + Delta-G solvation = 23.741880 kcal Electronic energy + Delta-G solvation = -24625.584031 eV Core-core repulsion = 20958.890882 eV Total energy + Delta-G solvation = -3666.693149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78313 -39.84929 -38.45130 -37.92799 -34.20882 -33.91142 -32.72185 -31.70479 -30.20316 -29.52334 -27.30061 -25.26747 -25.14821 -23.76570 -22.98115 -22.42692 -21.03850 -20.67901 -19.05592 -18.00158 -17.76230 -17.37528 -16.66179 -16.23363 -15.88739 -15.33449 -14.91832 -14.68718 -14.39259 -14.10510 -13.97901 -13.74297 -13.48094 -13.31152 -13.08802 -12.75784 -12.74353 -12.30397 -12.15689 -12.04585 -12.02166 -11.70232 -11.34245 -10.88261 -10.83928 -10.34804 -10.31945 -10.27876 -10.17692 -9.79594 -9.70102 -9.01023 -8.93272 -8.82172 -8.45098 -7.02062 -5.79947 -3.10220 0.28463 0.98433 1.58692 2.20576 3.07170 3.12528 3.31046 3.43083 3.47918 3.49806 4.16307 4.23664 4.46974 4.55523 4.62903 4.79499 4.86729 4.97361 5.06113 5.14272 5.19749 5.21983 5.24564 5.36587 5.41568 5.44998 5.63320 5.82520 5.84982 5.94548 5.97176 6.00100 6.06112 6.06642 6.12236 6.20734 6.31939 6.54309 6.67148 6.71857 6.74595 6.98701 7.49430 7.68857 8.07018 8.38091 9.48964 10.04716 10.38727 11.42157 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.034591 B = 0.002249 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.272855 B =12447.216589 C =13006.887469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.138 4.138 7 C -0.120 4.120 8 C -0.018 4.018 9 C 0.593 3.407 10 O -0.510 6.510 11 N -0.701 5.701 12 C 0.122 3.878 13 H 0.117 0.883 14 C -0.163 4.163 15 C 0.173 3.827 16 H 0.070 0.930 17 N -0.705 5.705 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.184 4.184 27 O -0.183 6.183 28 C 0.068 3.932 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.171 0.829 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 29.428 -0.247 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.153 4.153 5 C -0.085 4.085 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.068 4.068 9 C 0.377 3.623 10 O -0.387 6.387 11 N -0.350 5.350 12 C 0.019 3.981 13 H 0.135 0.865 14 C -0.203 4.203 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.226 4.226 27 O -0.084 6.084 28 C 0.020 3.980 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.188 0.812 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.746 28.618 -0.316 28.673 hybrid contribution -0.020 -0.481 -0.245 0.540 sum -1.766 28.138 -0.561 28.199 Atomic orbital electron populations 1.20766 0.90106 1.03346 1.02872 1.18856 0.96396 0.88277 1.04044 1.20896 0.94235 0.96424 0.99346 1.20775 0.94022 0.98156 1.02327 1.20364 1.00151 0.89985 0.97980 1.19937 0.93052 0.94009 1.06946 1.22762 0.99452 0.89990 1.01819 1.22232 0.85353 0.91178 1.08002 1.16739 0.84988 0.82898 0.77656 1.90929 1.33896 1.63734 1.50164 1.46090 1.07364 1.08688 1.72880 1.22820 0.99879 0.76370 0.99056 0.86526 1.23905 0.95747 0.99353 1.01290 1.20933 0.94792 0.85803 0.92552 0.91193 1.42204 1.44215 1.03239 1.44701 1.19266 1.17114 0.86041 1.15273 0.90894 1.24792 0.98784 0.98137 0.99055 1.69664 1.26964 1.28416 1.32677 0.86157 0.77720 0.83493 0.78588 1.21631 1.21742 1.20683 1.24370 1.02049 0.99846 0.96354 1.84003 1.33988 1.14266 1.76171 1.19550 0.92808 0.83391 1.02275 0.90771 0.90949 0.91129 0.84656 0.85102 0.85154 0.81163 0.76292 0.90609 0.90154 0.77953 0.93345 0.91112 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.02 36.01 0.36 -0.40 16 2 C -0.08 -0.66 5.89 -104.49 -0.62 -1.28 16 3 C -0.09 -0.64 9.67 -39.52 -0.38 -1.02 16 4 C -0.13 -0.94 9.98 -39.95 -0.40 -1.34 16 5 C -0.07 -0.57 10.06 -39.62 -0.40 -0.97 16 6 C -0.14 -1.55 6.38 -105.19 -0.67 -2.22 16 7 C -0.12 -1.47 10.80 -37.23 -0.40 -1.87 16 8 C -0.02 -0.24 7.07 -36.91 -0.26 -0.50 16 9 C 0.59 9.21 7.80 -12.72 -0.10 9.11 16 10 O -0.51 -9.73 16.44 5.22 0.09 -9.65 16 11 N -0.70 -9.82 5.36 -54.22 -0.29 -10.11 16 12 C 0.12 2.02 4.09 -67.11 -0.27 1.74 16 13 H 0.12 2.28 7.50 -51.93 -0.39 1.89 16 14 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 15 C 0.17 3.33 4.56 -67.03 -0.31 3.02 16 16 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 17 N -0.71 -17.52 5.31 -52.55 -0.28 -17.80 16 18 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.18 -3.22 7.69 -25.83 -0.20 -3.42 16 27 O -0.18 -2.25 10.28 2.76 0.03 -2.22 16 28 C 0.07 0.77 7.07 -38.35 -0.27 0.50 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.40 4.55 8.43 -40.82 -0.34 4.21 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.39 10.25 7.90 -40.82 -0.32 9.93 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -32.65 362.60 -9.32 -41.97 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.67 Total: 11.18 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.36 Total: -8.73 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.15 Total: -55.33 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.11 Total: -11.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.65 -9.32 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021097857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.711 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds