Wall clock time and date at job start Tue Mar 31 2020 10:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37841 * 120.07215 * 2 1 4 4 C 1.38788 * 120.74466 * 179.97438 * 3 2 1 5 5 C 1.36665 * 120.44319 * 0.02562 * 4 3 2 6 6 C 1.39655 * 119.70852 * 359.97438 * 5 4 3 7 7 C 1.46255 * 134.19431 * 180.02562 * 6 5 4 8 8 C 1.35808 * 106.08133 * 179.28016 * 7 6 5 9 9 C 1.46979 * 125.13122 * 180.02562 * 8 7 6 10 10 O 1.21661 * 119.99512 * 0.62039 * 9 8 7 11 11 N 1.34778 * 120.00402 * 180.61805 * 9 8 7 12 12 C 1.46502 * 119.99893 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.85457 * 25.32755 * 12 11 9 14 14 C 1.53781 * 113.61397 * 156.53077 * 12 11 9 15 15 C 1.53784 * 87.07877 * 139.97591 * 14 12 11 16 16 H 1.08995 * 113.60968 * 220.01385 * 15 14 12 17 17 N 1.46497 * 113.61067 * 89.20344 * 15 14 12 18 18 C 1.36937 * 119.99914 * 154.99762 * 17 15 14 19 19 H 1.07994 * 120.00104 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99771 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00218 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47349 * 89.99962 * 22 20 18 24 24 H 1.48498 * 109.47033 * 210.00223 * 22 20 18 25 25 H 1.48503 * 109.46911 * 330.00026 * 22 20 18 26 26 C 1.53789 * 113.61076 * 254.13565 * 12 11 9 27 27 O 1.34945 * 109.74466 * 0.61823 * 8 7 6 28 28 C 1.34722 * 110.86376 * 359.43857 * 27 8 7 29 29 H 1.09002 * 109.47152 * 89.99900 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00000 * 1 2 3 31 31 H 1.09004 * 109.47113 * 209.99981 * 1 2 3 32 32 H 1.08001 * 119.62646 * 0.02865 * 3 2 1 33 33 H 1.08001 * 119.78122 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.14290 * 180.02562 * 5 4 3 35 35 H 1.08007 * 126.95657 * 359.94804 * 7 6 5 36 36 H 0.96992 * 119.99776 * 0.02562 * 11 9 8 37 37 H 1.08997 * 113.61231 * 254.52416 * 14 12 11 38 38 H 1.09000 * 113.61124 * 25.42977 * 14 12 11 39 39 H 0.96999 * 120.00512 * 334.99042 * 17 15 14 40 40 H 0.97000 * 120.00123 * 180.02562 * 21 20 18 41 41 H 1.08997 * 113.61491 * 334.56682 * 26 12 11 42 42 H 1.08998 * 113.61202 * 105.47025 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2092 0.0005 5 6 4.2918 0.0391 0.0005 6 6 3.6110 -1.1802 0.0006 7 6 4.0295 -2.5816 0.0010 8 6 2.8869 -3.3155 0.0171 9 6 2.8249 -4.7840 0.0240 10 8 3.8520 -5.4361 0.0265 11 7 1.6303 -5.4081 0.0277 12 6 1.5686 -6.8718 0.0351 13 1 2.4580 -7.3308 0.4667 14 6 0.2516 -7.4300 0.5996 15 6 0.3116 -8.4853 -0.5173 16 1 -0.6573 -8.6989 -0.9686 17 7 1.0434 -9.6973 -0.1407 18 6 0.7713 -10.8840 -0.7675 19 1 0.0170 -10.9265 -1.5392 20 6 1.4651 -12.0322 -0.4110 21 7 2.3840 -11.9805 0.5298 22 14 1.0934 -13.6512 -1.2656 23 1 1.9665 -13.7932 -2.4584 24 1 1.3481 -14.7752 -0.3291 25 1 -0.3299 -13.6722 -1.6887 26 6 1.1573 -7.4778 -1.3172 27 8 1.8169 -2.4933 0.0128 28 6 2.2035 -1.2027 0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6528 2.1253 0.0005 33 1 4.1109 2.1528 0.0001 34 1 5.3716 0.0575 0.0014 35 1 5.0423 -2.9568 0.0007 36 1 0.8115 -4.8881 0.0254 37 1 0.3486 -7.8484 1.6014 38 1 -0.5894 -6.7428 0.5063 39 1 1.7207 -9.6592 0.5526 40 1 2.8691 -12.7828 0.7787 41 1 0.5643 -6.8038 -1.9354 42 1 1.9843 -7.9347 -1.8605 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021097857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:55 Heat of formation + Delta-G solvation = 2.680797 kcal Electronic energy + Delta-G solvation = -24626.497308 eV Core-core repulsion = 20958.890882 eV Total energy + Delta-G solvation = -3667.606426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61927 -41.14856 -39.51968 -38.97716 -35.83893 -34.67289 -34.38756 -32.42631 -31.82177 -30.71045 -27.85885 -26.69043 -26.55010 -25.45483 -23.79476 -23.69523 -21.84049 -21.76351 -20.43056 -19.40866 -19.08343 -18.53659 -17.60558 -17.51399 -16.73051 -16.62057 -16.24937 -16.00928 -15.67896 -15.47057 -15.03731 -14.78912 -14.45113 -14.29875 -14.18533 -14.10526 -13.68910 -13.38710 -13.34329 -13.25796 -12.91103 -12.81259 -12.67307 -12.56836 -12.17548 -11.96019 -11.87598 -11.81720 -11.52709 -11.28575 -11.16002 -10.89352 -10.20583 -9.67540 -9.19626 -9.04337 -7.96072 -5.26050 -0.54777 0.31208 0.72350 1.28698 1.47337 1.49603 1.57888 1.93246 2.01431 2.55065 2.65995 3.30017 3.35442 3.50576 3.58895 3.77372 3.84365 3.85866 3.94040 4.00165 4.25977 4.28990 4.29578 4.38458 4.48670 4.55891 4.71703 4.79246 4.79466 4.85047 4.94932 4.97809 5.08376 5.15655 5.24045 5.24770 5.29103 5.39481 5.44975 5.47016 5.51763 5.61237 5.97931 6.25916 6.34879 6.90636 7.31013 8.06536 8.28026 9.27335 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.034591 B = 0.002249 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.272855 B =12447.216589 C =13006.887469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.080 4.080 4 C -0.128 4.128 5 C -0.075 4.075 6 C -0.163 4.163 7 C -0.115 4.115 8 C -0.041 4.041 9 C 0.594 3.406 10 O -0.557 6.557 11 N -0.686 5.686 12 C 0.127 3.873 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.154 3.846 16 H 0.081 0.919 17 N -0.723 5.723 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.264 1.264 26 C -0.171 4.171 27 O -0.186 6.186 28 C 0.047 3.953 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.419 0.581 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.104 0.896 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 32.973 -0.944 33.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.164 4.164 7 C -0.136 4.136 8 C -0.091 4.091 9 C 0.380 3.620 10 O -0.437 6.437 11 N -0.336 5.336 12 C 0.023 3.977 13 H 0.098 0.902 14 C -0.177 4.177 15 C 0.043 3.957 16 H 0.099 0.901 17 N -0.360 5.360 18 C -0.375 4.375 19 H 0.101 0.899 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.805 3.195 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.189 1.189 26 C -0.213 4.213 27 O -0.089 6.089 28 C -0.001 4.001 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.191 0.809 36 H 0.257 0.743 37 H 0.085 0.915 38 H 0.143 0.857 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.705 32.232 -1.040 32.461 hybrid contribution 0.559 -1.294 -0.056 1.411 sum -3.146 30.937 -1.096 31.116 Atomic orbital electron populations 1.20810 0.88680 1.04011 1.03453 1.19291 0.97701 0.87853 1.04200 1.21417 0.94571 0.97036 0.96698 1.21241 0.94279 0.98849 1.00222 1.20715 1.01341 0.89587 0.97701 1.20143 0.93455 0.94136 1.08617 1.23000 0.99371 0.91095 1.00145 1.21700 0.86248 0.90186 1.10926 1.16960 0.84553 0.83836 0.76627 1.90898 1.35356 1.65116 1.52373 1.45843 1.07856 1.07612 1.72258 1.22444 0.99137 0.77691 0.98443 0.90217 1.23750 0.96411 0.98167 0.99332 1.21243 0.94741 0.84961 0.94775 0.90060 1.42399 1.44659 1.04506 1.44456 1.19713 1.16184 0.87007 1.14579 0.89923 1.25649 0.99349 1.01737 1.00387 1.69835 1.28668 1.28832 1.34826 0.85093 0.78188 0.79095 0.77092 1.21707 1.22342 1.18891 1.24231 1.00853 0.99621 0.96596 1.83940 1.33391 1.14824 1.76722 1.20063 0.93446 0.83477 1.03111 0.90167 0.88643 0.92148 0.81129 0.81723 0.83418 0.80914 0.74323 0.91534 0.85709 0.79593 0.94044 0.87754 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.02 71.24 0.71 -0.49 16 2 C -0.09 -1.37 5.89 -19.78 -0.12 -1.49 16 3 C -0.08 -0.80 9.67 22.31 0.22 -0.59 16 4 C -0.13 -1.30 9.98 22.03 0.22 -1.08 16 5 C -0.08 -1.13 10.06 22.24 0.22 -0.91 16 6 C -0.16 -3.52 6.38 -20.23 -0.13 -3.65 16 7 C -0.12 -2.92 10.80 23.79 0.26 -2.66 16 8 C -0.04 -1.13 7.07 24.00 0.17 -0.96 16 9 C 0.59 19.17 7.80 86.53 0.67 19.85 16 10 O -0.56 -22.63 16.44 -4.23 -0.07 -22.70 16 11 N -0.69 -19.14 5.36 -443.70 -2.38 -21.52 16 12 C 0.13 4.26 4.09 45.52 0.19 4.45 16 13 H 0.08 3.33 7.50 -2.39 -0.02 3.31 16 14 C -0.14 -4.12 7.58 31.12 0.24 -3.88 16 15 C 0.15 5.85 4.56 45.58 0.21 6.06 16 16 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 17 N -0.72 -36.78 5.31 -320.18 -1.70 -38.48 16 18 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 22 Si 0.98 46.68 29.55 68.60 2.03 48.70 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.17 -5.96 7.69 31.18 0.24 -5.72 16 27 O -0.19 -4.57 10.28 -13.05 -0.13 -4.70 16 28 C 0.05 1.02 7.07 23.07 0.16 1.18 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.06 0.76 8.09 -2.38 -0.02 0.74 16 32 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 36 H 0.42 8.88 8.43 -92.71 -0.78 8.09 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 39 H 0.37 20.71 7.90 -92.71 -0.73 19.98 16 40 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.83 362.60 2.14 -72.69 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.45 Total: 33.38 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.57 Total: -6.73 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -3.79 Total: -120.64 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.20 Total: -27.41 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -74.83 2.14 -72.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021097857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.372 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds