Wall clock time and date at job start Tue Mar 31 2020 10:24:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38838 * 119.77873 * 2 1
4 4 C 1.37792 * 120.74858 * 179.97438 * 3 2 1
5 5 C 1.39031 * 119.85503 * 359.97438 * 4 3 2
6 6 O 1.34708 * 133.24830 * 179.97438 * 5 4 3
7 7 C 1.34948 * 110.86488 * 180.02562 * 6 5 4
8 8 C 1.46983 * 125.13032 * 180.02562 * 7 6 5
9 9 O 1.21656 * 119.99561 * 179.97438 * 8 7 6
10 10 N 1.34776 * 120.00081 * 359.97438 * 8 7 6
11 11 C 1.46502 * 119.99743 * 180.02562 * 10 8 7
12 12 H 1.09000 * 112.84874 * 25.32397 * 11 10 8
13 13 C 1.53774 * 113.61175 * 156.52533 * 11 10 8
14 14 C 1.53782 * 87.07926 * 139.97741 * 13 11 10
15 15 H 1.09000 * 113.61362 * 89.20516 * 14 13 11
16 16 N 1.46503 * 113.61346 * 220.01429 * 14 13 11
17 17 C 1.36936 * 120.00326 * 204.99685 * 16 14 13
18 18 H 1.08004 * 119.99467 * 0.02562 * 17 16 14
19 19 C 1.38807 * 120.00626 * 180.02562 * 17 16 14
20 20 N 1.31628 * 119.99483 * 0.02562 * 19 17 16
21 21 Si 1.86791 * 120.00585 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47005 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47752 * 119.99662 * 21 19 17
24 24 H 1.48504 * 109.47057 * 239.99991 * 21 19 17
25 25 C 1.53780 * 113.61168 * 254.13223 * 11 10 8
26 26 C 1.35803 * 109.73808 * 359.97438 * 7 6 5
27 27 C 1.40735 * 119.15523 * 0.02562 * 5 4 3
28 28 C 1.36618 * 119.78006 * 180.19763 * 2 1 3
29 29 H 1.09001 * 109.46531 * 90.00092 * 1 2 3
30 30 H 1.09000 * 109.46897 * 210.00096 * 1 2 3
31 31 H 1.09002 * 109.46851 * 330.00219 * 1 2 3
32 32 H 1.08007 * 119.62458 * 0.02562 * 3 2 1
33 33 H 1.08002 * 120.07922 * 179.97438 * 4 3 2
34 34 H 0.96997 * 119.99928 * 359.97438 * 10 8 7
35 35 H 1.08998 * 113.61398 * 254.52502 * 13 11 10
36 36 H 1.08998 * 113.62015 * 25.34831 * 13 11 10
37 37 H 0.97000 * 119.99737 * 25.00353 * 16 14 13
38 38 H 0.96997 * 119.99741 * 180.02562 * 20 19 17
39 39 H 1.09007 * 113.61119 * 334.56384 * 25 11 10
40 40 H 1.09000 * 113.61855 * 105.46828 * 25 11 10
41 41 H 1.08002 * 126.96222 * 180.02562 * 26 7 6
42 42 H 1.08003 * 120.14437 * 359.82281 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1966 1.2050 0.0000
4 6 3.5743 1.2284 0.0005
5 6 4.2867 0.0345 0.0016
6 8 5.6022 -0.2553 0.0019
7 6 5.8003 -1.5902 0.0025
8 6 7.1136 -2.2504 0.0035
9 8 7.1837 -3.4649 0.0045
10 7 8.2399 -1.5102 0.0033
11 6 9.5488 -2.1683 0.0037
12 1 9.5191 -3.1698 -0.4255
13 6 10.6797 -1.2906 -0.5578
14 6 11.5674 -1.8534 0.5647
15 1 12.0918 -2.7685 0.2893
16 7 12.4489 -0.8537 1.1729
17 6 13.6108 -1.2456 1.7824
18 1 13.8775 -2.2917 1.8144
19 6 14.4458 -0.2985 2.3591
20 7 14.1204 0.9763 2.3204
21 14 16.0311 -0.8330 3.1899
22 1 16.1645 -2.3092 3.0985
23 1 17.1859 -0.1885 2.5144
24 1 16.0030 -0.4265 4.6179
25 6 10.2720 -2.1002 1.3591
26 6 4.6033 -2.2315 0.0033
27 6 3.5826 -1.1841 0.0016
28 6 2.1856 -1.1858 -0.0041
29 1 -0.3632 0.0000 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5138
32 1 1.6468 2.1347 0.0004
33 1 4.0997 2.1720 0.0001
34 1 8.1839 -0.5419 0.0021
35 1 11.0028 -1.5814 -1.5573
36 1 10.4874 -0.2213 -0.4695
37 1 12.2094 0.0858 1.1438
38 1 14.7041 1.6382 2.7231
39 1 9.9687 -1.2526 1.9738
40 1 10.2664 -3.0437 1.9050
41 1 4.4384 -3.2989 0.0043
42 1 1.6443 -2.1204 -0.0044
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001023128365.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:24:54
Heat of formation + Delta-G solvation = 21.325679 kcal
Electronic energy + Delta-G solvation = -24291.287192 eV
Core-core repulsion = 20624.489269 eV
Total energy + Delta-G solvation = -3666.797923 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.76743 -39.88893 -38.60524 -37.94607 -34.23100 -33.14451 -32.87595 -32.44911
-30.19237 -29.67089 -27.32207 -25.24360 -25.16963 -23.97512 -22.42547 -21.97925
-21.54901 -20.61058 -19.51646 -18.17017 -17.76411 -17.13870 -16.63325 -16.32368
-15.67156 -15.40557 -14.83519 -14.64081 -14.52945 -14.41425 -14.08635 -14.01727
-13.52368 -13.33189 -13.06828 -12.91619 -12.60174 -12.24525 -12.19507 -12.02464
-11.95377 -11.32559 -11.29220 -10.97651 -10.79547 -10.54997 -10.51981 -10.41422
-10.18451 -9.99510 -9.65856 -9.00522 -8.90724 -8.79217 -8.54580 -7.00925
-5.82062 -3.11157 0.27972 0.95583 1.58016 2.20898 3.01469 3.07612
3.28929 3.41229 3.47402 3.49374 4.12059 4.28900 4.41224 4.56819
4.65553 4.74269 4.85458 4.94269 5.02279 5.07523 5.17217 5.19244
5.27025 5.31958 5.44254 5.49300 5.53347 5.75604 5.82031 5.82468
5.87249 5.99791 6.05749 6.13431 6.19854 6.22080 6.27057 6.38872
6.57227 6.65713 6.71686 7.01969 7.45041 7.67723 7.99027 8.36272
9.47773 10.03988 10.38474 11.40313
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.027934 B = 0.002135 C = 0.002035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1002.117529 B =13111.102065 C =13756.936446
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.107 4.107
3 C -0.085 4.085
4 C -0.105 4.105
5 C 0.065 3.935
6 O -0.183 6.183
7 C -0.018 4.018
8 C 0.596 3.404
9 O -0.519 6.519
10 N -0.697 5.697
11 C 0.115 3.885
12 H 0.113 0.887
13 C -0.158 4.158
14 C 0.170 3.830
15 H 0.082 0.918
16 N -0.710 5.710
17 C -0.244 4.244
18 H 0.073 0.927
19 C -0.013 4.013
20 N -0.932 5.932
21 Si 0.908 3.092
22 H -0.279 1.279
23 H -0.291 1.291
24 H -0.291 1.291
25 C -0.176 4.176
26 C -0.119 4.119
27 C -0.139 4.139
28 C -0.063 4.063
29 H 0.071 0.929
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.137 0.863
33 H 0.137 0.863
34 H 0.406 0.594
35 H 0.069 0.931
36 H 0.083 0.917
37 H 0.385 0.615
38 H 0.255 0.745
39 H 0.081 0.919
40 H 0.062 0.938
41 H 0.170 0.830
42 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.678 -0.910 -7.139 28.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.107 4.107
3 C -0.103 4.103
4 C -0.123 4.123
5 C 0.016 3.984
6 O -0.085 6.085
7 C -0.068 4.068
8 C 0.381 3.619
9 O -0.397 6.397
10 N -0.346 5.346
11 C 0.011 3.989
12 H 0.131 0.869
13 C -0.198 4.198
14 C 0.057 3.943
15 H 0.100 0.900
16 N -0.347 5.347
17 C -0.376 4.376
18 H 0.091 0.909
19 C -0.209 4.209
20 N -0.580 5.580
21 Si 0.739 3.261
22 H -0.205 1.205
23 H -0.218 1.218
24 H -0.218 1.218
25 C -0.219 4.219
26 C -0.140 4.140
27 C -0.140 4.140
28 C -0.081 4.081
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.154 0.846
33 H 0.155 0.845
34 H 0.242 0.758
35 H 0.088 0.912
36 H 0.102 0.898
37 H 0.219 0.781
38 H 0.065 0.935
39 H 0.099 0.901
40 H 0.080 0.920
41 H 0.188 0.812
42 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -27.166 -1.652 -7.058 28.117
hybrid contribution 0.660 0.566 0.549 1.028
sum -26.506 -1.086 -6.510 27.316
Atomic orbital electron populations
1.20763 0.90470 1.03021 1.02498 1.19543 0.96554 0.92636 1.01988
1.20894 0.92434 0.98144 0.98792 1.20007 0.93107 0.94866 1.04358
1.19752 0.80929 0.95736 1.01938 1.84032 1.24610 1.23694 1.76115
1.22160 0.96148 0.80411 1.08107 1.16707 0.81483 0.86332 0.77421
1.90877 1.85758 1.12121 1.50958 1.46030 1.05659 1.10480 1.72430
1.22659 0.78875 0.97733 0.99670 0.86924 1.23872 0.95709 0.99919
1.00270 1.21373 0.88470 0.93642 0.90836 0.90046 1.42364 1.22032
1.04992 1.65354 1.19366 0.96966 0.92972 1.28246 0.90870 1.24781
0.99260 0.95321 1.01573 1.69673 1.38533 0.99731 1.50084 0.86095
0.83343 0.77670 0.78947 1.20458 1.21825 1.21850 1.24393 0.99377
1.01990 0.96109 1.22719 0.89203 1.00125 1.01950 1.19912 0.94577
0.92467 1.07033 1.20211 0.91018 0.98386 0.98472 0.91070 0.91402
0.91326 0.84558 0.84546 0.75838 0.91225 0.89808 0.78062 0.93485
0.90065 0.91956 0.81239 0.85211
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.51 9.99 36.01 0.36 -0.15 16
2 C -0.11 -0.78 5.85 -104.98 -0.61 -1.40 16
3 C -0.08 -0.61 9.66 -39.52 -0.38 -0.99 16
4 C -0.10 -0.93 10.07 -39.45 -0.40 -1.33 16
5 C 0.06 0.74 7.41 -38.34 -0.28 0.46 16
6 O -0.18 -2.32 10.28 2.79 0.03 -2.29 16
7 C -0.02 -0.24 7.07 -36.91 -0.26 -0.50 16
8 C 0.60 8.72 7.80 -12.72 -0.10 8.62 16
9 O -0.52 -8.90 16.44 5.23 0.09 -8.81 16
10 N -0.70 -9.57 5.36 -54.23 -0.29 -9.86 16
11 C 0.11 1.71 4.21 -67.12 -0.28 1.43 16
12 H 0.11 1.70 7.50 -51.93 -0.39 1.31 16
13 C -0.16 -2.45 7.58 -25.92 -0.20 -2.65 16
14 C 0.17 3.26 4.48 -67.03 -0.30 2.96 16
15 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16
16 N -0.71 -17.40 5.40 -52.55 -0.28 -17.68 16
17 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16
18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16
19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16
20 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16
21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16
22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16
25 C -0.18 -3.07 7.69 -25.83 -0.20 -3.27 16
26 C -0.12 -1.40 10.80 -37.24 -0.40 -1.81 16
27 C -0.14 -1.53 6.38 -105.19 -0.67 -2.20 16
28 C -0.06 -0.54 9.68 -39.62 -0.38 -0.92 16
29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16
31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16
32 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16
33 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16
34 H 0.41 4.96 8.43 -40.82 -0.34 4.62 16
35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16
37 H 0.39 9.98 7.92 -40.82 -0.32 9.65 16
38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
41 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16
42 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
LS Contribution 362.70 15.07 5.47 5.47
Total: -1.00 -32.16 362.70 -9.32 -41.48
By element:
Atomic # 1 Polarization: 16.35 SS G_CDS: -5.67 Total: 10.68 kcal
Atomic # 6 Polarization: -4.72 SS G_CDS: -4.36 Total: -9.08 kcal
Atomic # 7 Polarization: -54.82 SS G_CDS: 0.15 Total: -54.67 kcal
Atomic # 8 Polarization: -11.21 SS G_CDS: 0.11 Total: -11.10 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -32.16 -9.32 -41.48 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001023128365.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.805 kcal
(2) G-P(sol) polarization free energy of solvation -32.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.642 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds