Wall clock time and date at job start Tue Mar 31 2020 10:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36666 * 120.14339 * 2 1 4 4 C 1.38793 * 120.44238 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.74291 * 359.95243 * 4 3 2 6 6 C 1.38985 * 119.85672 * 0.04746 * 5 4 3 7 7 O 1.34714 * 133.24823 * 180.02562 * 6 5 4 8 8 C 1.34944 * 110.86365 * 179.97438 * 7 6 5 9 9 C 1.46983 * 125.12593 * 180.02562 * 8 7 6 10 10 O 1.21653 * 119.99691 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00038 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99865 * 180.02562 * 11 9 8 13 13 H 1.09006 * 112.90948 * 313.71007 * 12 11 9 14 14 C 1.53782 * 113.61669 * 84.95978 * 12 11 9 15 15 C 1.53778 * 87.08098 * 89.11516 * 14 12 11 16 16 H 1.08998 * 113.61694 * 139.97926 * 15 14 12 17 17 N 1.46506 * 113.61801 * 270.88743 * 15 14 12 18 18 C 1.36929 * 120.00227 * 202.40864 * 17 15 14 19 19 H 1.08004 * 119.99983 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00295 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00123 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99474 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47175 * 90.00345 * 22 20 18 24 24 H 1.48501 * 109.46774 * 210.00280 * 22 20 18 25 25 H 1.48502 * 109.47523 * 329.99970 * 22 20 18 26 26 C 1.53779 * 87.08309 * 25.43284 * 15 14 12 27 27 C 1.35795 * 109.74620 * 0.25855 * 8 7 6 28 28 C 1.39660 * 120.14851 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46857 * 269.97835 * 1 2 3 30 30 H 1.09000 * 109.47254 * 29.97709 * 1 2 3 31 31 H 1.08997 * 109.46614 * 149.98233 * 1 2 3 32 32 H 1.07998 * 119.77741 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.62403 * 180.02562 * 4 3 2 34 34 H 1.08005 * 120.06723 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00166 * 0.02562 * 11 9 8 36 36 H 1.08996 * 113.61299 * 334.57164 * 14 12 11 37 37 H 1.08998 * 113.61743 * 203.66169 * 14 12 11 38 38 H 0.96998 * 119.99280 * 22.40439 * 17 15 14 39 39 H 0.97001 * 120.00058 * 179.97438 * 21 20 18 40 40 H 1.09003 * 113.61592 * 89.11360 * 26 15 14 41 41 H 1.08996 * 113.61804 * 219.93541 * 26 15 14 42 42 H 1.08001 * 126.96213 * 179.69954 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1891 -0.0005 5 6 4.2920 0.0081 -0.0001 6 6 3.6160 -1.2063 -0.0001 7 8 4.0245 -2.4900 0.0007 8 6 2.9686 -3.3303 0.0008 9 6 3.0555 -4.7976 0.0022 10 8 2.0397 -5.4670 0.0017 11 7 4.2605 -5.4013 0.0039 12 6 4.3470 -6.8637 0.0047 13 1 3.6786 -7.3279 0.7299 14 6 4.2616 -7.4866 -1.3987 15 6 5.7910 -7.3430 -1.4698 16 1 6.2883 -8.1941 -1.9349 17 7 6.2351 -6.0566 -2.0124 18 6 7.4843 -5.9393 -2.5606 19 1 8.1425 -6.7951 -2.5927 20 6 7.9049 -4.7206 -3.0752 21 7 9.1059 -4.6078 -3.6016 22 14 6.7663 -3.2408 -3.0203 23 1 6.9810 -2.4977 -1.7526 24 1 7.0572 -2.3495 -4.1719 25 1 5.3555 -3.6986 -3.0928 26 6 5.7886 -7.3954 0.0671 27 6 1.8138 -2.6159 -0.0056 28 6 2.2085 -1.2077 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6520 2.1164 0.0004 33 1 4.1102 2.1307 -0.0001 34 1 5.3719 0.0265 -0.0001 35 1 5.0704 -4.8675 0.0047 36 1 3.7308 -6.8658 -2.1204 37 1 3.9199 -8.5217 -1.3969 38 1 5.6440 -5.2880 -1.9832 39 1 9.3997 -3.7563 -3.9615 40 1 5.8644 -8.4056 0.4697 41 1 6.4916 -6.7020 0.5287 42 1 0.8075 -3.0082 -0.0117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023142363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:45 Heat of formation + Delta-G solvation = 31.763816 kcal Electronic energy + Delta-G solvation = -25987.368700 eV Core-core repulsion = 22321.023408 eV Total energy + Delta-G solvation = -3666.345292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.62459 -40.04401 -38.41428 -37.95277 -33.89535 -33.52915 -32.81074 -31.74570 -30.59478 -29.85579 -27.14033 -25.40355 -25.07616 -23.85289 -22.84911 -22.15836 -20.87215 -20.50428 -19.23903 -18.23841 -17.62496 -17.29610 -16.49943 -16.18628 -15.92214 -15.13692 -15.10311 -14.71125 -14.35252 -14.05062 -13.95756 -13.78327 -13.74877 -13.28122 -13.20669 -12.75691 -12.56886 -12.19275 -12.11190 -11.94400 -11.88803 -11.83492 -11.17499 -11.04911 -10.96645 -10.53895 -10.33222 -10.27681 -10.23521 -9.78129 -9.62739 -9.07464 -8.88906 -8.76663 -8.29300 -7.38162 -5.85751 -3.22462 0.42046 1.15353 1.71665 2.38069 3.09372 3.16500 3.31108 3.35406 3.39994 3.45790 4.25910 4.40335 4.50617 4.59701 4.83110 4.88643 4.91122 4.99719 5.03533 5.09595 5.20842 5.26407 5.33893 5.34346 5.43734 5.50495 5.62018 5.70919 5.75014 5.93914 5.99790 6.03858 6.06693 6.16692 6.24103 6.26963 6.35175 6.44088 6.50899 6.59948 6.79119 6.92187 7.52023 7.91861 8.07685 8.34103 9.11080 9.83546 10.02356 11.32086 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.004959 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.372401 B = 5645.112421 C = 7403.587325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.028 4.028 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.116 4.116 6 C 0.075 3.925 7 O -0.180 6.180 8 C -0.022 4.022 9 C 0.599 3.401 10 O -0.519 6.519 11 N -0.691 5.691 12 C 0.122 3.878 13 H 0.089 0.911 14 C -0.168 4.168 15 C 0.169 3.831 16 H 0.074 0.926 17 N -0.731 5.731 18 C -0.249 4.249 19 H 0.094 0.906 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.871 3.129 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C -0.176 4.176 27 C -0.115 4.115 28 C -0.144 4.144 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.361 0.639 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 8.183 10.298 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.162 4.162 4 C -0.098 4.098 5 C -0.134 4.134 6 C 0.027 3.973 7 O -0.082 6.082 8 C -0.072 4.072 9 C 0.384 3.616 10 O -0.397 6.397 11 N -0.342 5.342 12 C 0.017 3.983 13 H 0.107 0.893 14 C -0.208 4.208 15 C 0.058 3.942 16 H 0.092 0.908 17 N -0.372 5.372 18 C -0.379 4.379 19 H 0.112 0.888 20 C -0.185 4.185 21 N -0.576 5.576 22 Si 0.701 3.299 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 C -0.217 4.217 27 C -0.136 4.136 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.195 0.805 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.558 7.561 10.174 20.069 hybrid contribution -0.324 1.504 -0.083 1.540 sum -15.882 9.065 10.091 20.887 Atomic orbital electron populations 1.20818 0.90554 1.03222 1.02707 1.19142 0.96141 0.90640 0.96939 1.20671 0.94148 0.97439 1.03909 1.20970 0.94010 0.97037 0.97773 1.20080 1.00734 0.87658 1.04970 1.19767 0.92742 0.83866 1.00941 1.84098 1.34034 1.14239 1.75788 1.22092 0.85786 0.90899 1.08427 1.16654 0.84466 0.83183 0.77333 1.90852 1.35018 1.62816 1.50978 1.45817 1.07984 1.08000 1.72431 1.21915 0.99269 0.78573 0.98534 0.89342 1.23877 0.99389 1.01032 0.96475 1.21139 0.91913 0.89988 0.91180 0.90759 1.42638 1.16267 1.06874 1.71432 1.19114 0.89834 0.97508 1.31448 0.88776 1.24637 0.96281 0.97239 1.00373 1.69683 1.17789 1.25109 1.44970 0.86751 0.80811 0.84355 0.77980 1.20416 1.21430 1.20484 1.24129 0.94049 1.01116 1.02451 1.22630 0.98921 0.90103 1.01947 1.19743 0.92917 0.93515 1.08269 0.90666 0.91069 0.91144 0.85163 0.84477 0.84588 0.75137 0.91315 0.88955 0.80492 0.92921 0.89112 0.90518 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.96 36.01 0.36 -0.58 16 2 C -0.03 -0.32 5.88 -104.66 -0.62 -0.93 16 3 C -0.14 -1.39 9.63 -39.94 -0.38 -1.78 16 4 C -0.08 -0.81 10.01 -39.52 -0.40 -1.21 16 5 C -0.12 -1.51 10.07 -39.45 -0.40 -1.91 16 6 C 0.08 1.17 7.41 -38.35 -0.28 0.89 16 7 O -0.18 -3.14 10.28 2.79 0.03 -3.11 16 8 C -0.02 -0.36 7.07 -36.92 -0.26 -0.63 16 9 C 0.60 10.36 7.80 -12.72 -0.10 10.26 16 10 O -0.52 -9.62 16.77 5.23 0.09 -9.54 16 11 N -0.69 -11.69 4.32 -54.23 -0.23 -11.93 16 12 C 0.12 1.89 4.00 -67.12 -0.27 1.62 16 13 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 14 C -0.17 -2.72 7.62 -25.92 -0.20 -2.92 16 15 C 0.17 3.15 4.55 -67.12 -0.31 2.85 16 16 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 17 N -0.73 -16.96 4.82 -52.64 -0.25 -17.22 16 18 C -0.25 -6.89 10.46 -15.06 -0.16 -7.05 16 19 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -28.78 13.97 55.49 0.78 -28.00 16 22 Si 0.87 22.19 27.73 -169.99 -4.71 17.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.96 6.52 56.52 0.37 -6.59 16 26 C -0.18 -2.72 7.57 -25.92 -0.20 -2.91 16 27 C -0.12 -1.66 10.51 -37.24 -0.39 -2.05 16 28 C -0.14 -2.01 6.15 -105.19 -0.65 -2.65 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.41 7.25 7.54 -40.82 -0.31 6.94 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.36 8.42 4.23 -40.82 -0.17 8.25 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 42 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -32.91 356.02 -8.83 -41.73 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.55 Total: 14.00 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.34 Total: -8.78 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.29 Total: -57.15 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.12 Total: -12.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.91 -8.83 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023142363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.498 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds