Wall clock time and date at job start Tue Mar 31 2020 10:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36666 * 120.14339 * 2 1 4 4 C 1.38793 * 120.44238 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.74291 * 359.95243 * 4 3 2 6 6 C 1.38985 * 119.85672 * 0.04746 * 5 4 3 7 7 O 1.34714 * 133.24823 * 180.02562 * 6 5 4 8 8 C 1.34944 * 110.86365 * 179.97438 * 7 6 5 9 9 C 1.46983 * 125.12593 * 180.02562 * 8 7 6 10 10 O 1.21653 * 119.99691 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00038 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99865 * 180.02562 * 11 9 8 13 13 H 1.09006 * 112.90948 * 313.71007 * 12 11 9 14 14 C 1.53782 * 113.61669 * 84.95978 * 12 11 9 15 15 C 1.53778 * 87.08098 * 89.11516 * 14 12 11 16 16 H 1.08998 * 113.61694 * 139.97926 * 15 14 12 17 17 N 1.46506 * 113.61801 * 270.88743 * 15 14 12 18 18 C 1.36929 * 120.00227 * 202.40864 * 17 15 14 19 19 H 1.08004 * 119.99983 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00295 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00123 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99474 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47175 * 90.00345 * 22 20 18 24 24 H 1.48501 * 109.46774 * 210.00280 * 22 20 18 25 25 H 1.48502 * 109.47523 * 329.99970 * 22 20 18 26 26 C 1.53779 * 87.08309 * 25.43284 * 15 14 12 27 27 C 1.35795 * 109.74620 * 0.25855 * 8 7 6 28 28 C 1.39660 * 120.14851 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46857 * 269.97835 * 1 2 3 30 30 H 1.09000 * 109.47254 * 29.97709 * 1 2 3 31 31 H 1.08997 * 109.46614 * 149.98233 * 1 2 3 32 32 H 1.07998 * 119.77741 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.62403 * 180.02562 * 4 3 2 34 34 H 1.08005 * 120.06723 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00166 * 0.02562 * 11 9 8 36 36 H 1.08996 * 113.61299 * 334.57164 * 14 12 11 37 37 H 1.08998 * 113.61743 * 203.66169 * 14 12 11 38 38 H 0.96998 * 119.99280 * 22.40439 * 17 15 14 39 39 H 0.97001 * 120.00058 * 179.97438 * 21 20 18 40 40 H 1.09003 * 113.61592 * 89.11360 * 26 15 14 41 41 H 1.08996 * 113.61804 * 219.93541 * 26 15 14 42 42 H 1.08001 * 126.96213 * 179.69954 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1891 -0.0005 5 6 4.2920 0.0081 -0.0001 6 6 3.6160 -1.2063 -0.0001 7 8 4.0245 -2.4900 0.0007 8 6 2.9686 -3.3303 0.0008 9 6 3.0555 -4.7976 0.0022 10 8 2.0397 -5.4670 0.0017 11 7 4.2605 -5.4013 0.0039 12 6 4.3470 -6.8637 0.0047 13 1 3.6786 -7.3279 0.7299 14 6 4.2616 -7.4866 -1.3987 15 6 5.7910 -7.3430 -1.4698 16 1 6.2883 -8.1941 -1.9349 17 7 6.2351 -6.0566 -2.0124 18 6 7.4843 -5.9393 -2.5606 19 1 8.1425 -6.7951 -2.5927 20 6 7.9049 -4.7206 -3.0752 21 7 9.1059 -4.6078 -3.6016 22 14 6.7663 -3.2408 -3.0203 23 1 6.9810 -2.4977 -1.7526 24 1 7.0572 -2.3495 -4.1719 25 1 5.3555 -3.6986 -3.0928 26 6 5.7886 -7.3954 0.0671 27 6 1.8138 -2.6159 -0.0056 28 6 2.2085 -1.2077 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6520 2.1164 0.0004 33 1 4.1102 2.1307 -0.0001 34 1 5.3719 0.0265 -0.0001 35 1 5.0704 -4.8675 0.0047 36 1 3.7308 -6.8658 -2.1204 37 1 3.9199 -8.5217 -1.3969 38 1 5.6440 -5.2880 -1.9832 39 1 9.3997 -3.7563 -3.9615 40 1 5.8644 -8.4056 0.4697 41 1 6.4916 -6.7020 0.5287 42 1 0.8075 -3.0082 -0.0117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023142363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:44 Heat of formation + Delta-G solvation = 11.007795 kcal Electronic energy + Delta-G solvation = -25988.268749 eV Core-core repulsion = 22321.023408 eV Total energy + Delta-G solvation = -3667.245340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.69369 -41.36652 -39.54004 -39.11956 -35.69269 -34.45684 -34.37629 -32.70115 -32.56589 -30.89952 -27.94214 -26.77991 -26.45363 -25.41869 -23.82511 -23.62789 -21.91046 -21.69886 -20.78605 -19.57589 -19.41462 -18.28799 -17.67764 -17.29947 -17.08211 -16.70064 -16.39759 -16.16773 -15.80439 -15.43153 -15.17436 -14.79891 -14.78262 -14.50959 -14.33454 -14.17661 -13.92321 -13.57466 -13.28189 -13.23416 -12.96599 -12.73999 -12.71096 -12.60581 -12.24263 -12.03261 -12.02301 -11.88578 -11.58677 -11.31482 -11.14859 -11.02876 -10.23359 -9.75515 -9.37759 -9.25675 -8.10446 -5.42530 -0.61051 0.23147 0.66865 1.25721 1.27449 1.29636 1.32490 1.86132 1.95368 2.36183 2.57429 3.18982 3.20210 3.44065 3.48795 3.60367 3.74392 3.78197 3.89348 4.04314 4.08486 4.16333 4.27549 4.30261 4.43068 4.65716 4.67894 4.69610 4.79269 4.86309 4.90731 4.93424 4.97673 5.16074 5.18028 5.19410 5.20575 5.29250 5.38788 5.45546 5.56463 5.75405 5.92073 6.15817 6.21553 6.76761 6.99915 7.77458 7.94131 9.11003 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.004959 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.372401 B = 5645.112421 C = 7403.587325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.030 4.030 3 C -0.139 4.139 4 C -0.062 4.062 5 C -0.146 4.146 6 C 0.043 3.957 7 O -0.206 6.206 8 C -0.060 4.060 9 C 0.600 3.400 10 O -0.538 6.538 11 N -0.696 5.696 12 C 0.121 3.879 13 H 0.109 0.891 14 C -0.155 4.155 15 C 0.144 3.856 16 H 0.073 0.927 17 N -0.738 5.738 18 C -0.228 4.228 19 H 0.070 0.930 20 C -0.050 4.050 21 N -0.975 5.975 22 Si 0.932 3.068 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.275 1.275 26 C -0.156 4.156 27 C -0.097 4.097 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.406 0.594 36 H 0.045 0.955 37 H 0.128 0.872 38 H 0.361 0.639 39 H 0.258 0.742 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 9.714 11.509 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.080 4.080 5 C -0.164 4.164 6 C -0.005 4.005 7 O -0.109 6.109 8 C -0.109 4.109 9 C 0.386 3.614 10 O -0.418 6.418 11 N -0.346 5.346 12 C 0.017 3.983 13 H 0.127 0.873 14 C -0.194 4.194 15 C 0.035 3.965 16 H 0.091 0.909 17 N -0.380 5.380 18 C -0.359 4.359 19 H 0.088 0.912 20 C -0.242 4.242 21 N -0.626 5.626 22 Si 0.761 3.239 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.202 1.202 26 C -0.196 4.196 27 C -0.118 4.118 28 C -0.164 4.164 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.153 0.847 35 H 0.242 0.758 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.195 0.805 39 H 0.068 0.932 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.302 9.052 11.423 23.396 hybrid contribution 0.470 1.056 -0.430 1.233 sum -17.832 10.107 10.993 23.259 Atomic orbital electron populations 1.20912 0.88243 1.04248 1.03849 1.19624 0.97911 0.89973 0.95494 1.21183 0.94083 0.98472 1.01965 1.21476 0.94609 0.97236 0.94681 1.20396 1.01179 0.87973 1.06901 1.20344 0.94147 0.83767 1.02230 1.84024 1.34775 1.15253 1.76841 1.22042 0.86508 0.90698 1.11672 1.16755 0.84227 0.83645 0.76755 1.90816 1.35335 1.63437 1.52168 1.45915 1.07712 1.08593 1.72370 1.22052 0.99637 0.78027 0.98563 0.87303 1.23857 0.96630 1.02770 0.96191 1.21518 0.93896 0.87786 0.93333 0.90930 1.42653 1.14754 1.08797 1.71793 1.19129 0.90916 0.96342 1.29470 0.91213 1.25247 0.97644 0.99927 1.01399 1.69824 1.19760 1.25667 1.47312 0.85765 0.79027 0.81243 0.77867 1.19559 1.21980 1.20155 1.23992 0.93590 1.02945 0.99072 1.22949 0.99031 0.90509 0.99298 1.19993 0.92564 0.94215 1.09656 0.89310 0.88740 0.91491 0.81253 0.80945 0.84709 0.75804 0.93586 0.85419 0.80548 0.93236 0.85301 0.91905 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.96 71.24 0.71 -0.76 16 2 C -0.03 -0.58 5.88 -19.89 -0.12 -0.70 16 3 C -0.14 -2.16 9.63 22.03 0.21 -1.94 16 4 C -0.06 -1.08 10.01 22.31 0.22 -0.86 16 5 C -0.15 -3.71 10.07 22.35 0.23 -3.48 16 6 C 0.04 1.34 7.41 23.07 0.17 1.51 16 7 O -0.21 -7.42 10.28 -12.95 -0.13 -7.55 16 8 C -0.06 -2.03 7.07 24.00 0.17 -1.86 16 9 C 0.60 20.91 7.80 86.53 0.67 21.59 16 10 O -0.54 -19.78 16.77 -4.20 -0.07 -19.85 16 11 N -0.70 -23.53 4.32 -443.71 -1.92 -25.45 16 12 C 0.12 3.57 4.00 45.52 0.18 3.75 16 13 H 0.11 2.83 8.05 -2.38 -0.02 2.81 16 14 C -0.15 -4.77 7.62 31.12 0.24 -4.53 16 15 C 0.14 5.24 4.55 45.51 0.21 5.45 16 16 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 17 N -0.74 -34.56 4.82 -320.44 -1.55 -36.10 16 18 C -0.23 -12.88 10.46 84.04 0.88 -12.00 16 19 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 20 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 21 N -0.98 -62.36 13.97 21.65 0.30 -62.06 16 22 Si 0.93 47.46 27.73 68.60 1.90 49.36 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 25 H -0.28 -13.68 6.52 99.48 0.65 -13.03 16 26 C -0.16 -4.51 7.57 31.12 0.24 -4.28 16 27 C -0.10 -2.78 10.51 23.79 0.25 -2.53 16 28 C -0.16 -4.42 6.15 -20.24 -0.12 -4.55 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.07 0.91 7.91 -2.39 -0.02 0.89 16 32 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.41 14.59 7.54 -92.71 -0.70 13.89 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.36 16.98 4.23 -92.71 -0.39 16.58 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 42 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -74.56 356.02 3.05 -71.51 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.09 Total: 37.82 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.60 Total: -7.68 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -3.16 Total: -123.61 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.20 Total: -27.41 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.36 kcal Total: -74.56 3.05 -71.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023142363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.516 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds