Wall clock time and date at job start Tue Mar 31 2020 10:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46245 * 126.96407 * 2 1 4 4 C 1.39709 * 134.18820 * 0.02562 * 3 2 1 5 5 C 1.36613 * 119.71079 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44675 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5 9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7 11 11 C 1.46970 * 125.13537 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00258 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00021 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.53949 * 113.74025 * 273.73986 * 15 14 13 17 17 N 1.47815 * 86.03924 * 222.08228 * 16 15 14 18 18 C 1.36928 * 134.46009 * 204.64248 * 17 16 15 19 19 H 1.08004 * 120.00084 * 179.86890 * 18 17 16 20 20 C 1.38811 * 120.00047 * 359.86680 * 18 17 16 21 21 N 1.31611 * 120.00233 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46878 * 60.00437 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47616 * 300.00246 * 22 20 18 26 26 C 1.47589 * 91.04696 * 24.54710 * 17 16 15 27 27 H 1.09003 * 109.47075 * 89.99495 * 1 2 3 28 28 H 1.08995 * 109.47686 * 210.00377 * 1 2 3 29 29 H 1.09002 * 109.46679 * 330.00134 * 1 2 3 30 30 H 1.07996 * 120.13949 * 359.95436 * 4 3 2 31 31 H 1.08002 * 119.77753 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.63173 * 179.72184 * 6 5 4 33 33 H 1.08006 * 120.07020 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99826 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47118 * 300.00022 * 14 13 11 36 36 H 1.09003 * 109.47393 * 59.99339 * 14 13 11 37 37 H 1.09003 * 112.94651 * 45.32905 * 15 14 13 38 38 H 1.09003 * 113.77019 * 336.34573 * 16 15 14 39 39 H 1.09001 * 113.77132 * 107.74721 * 16 15 14 40 40 H 0.96994 * 120.00549 * 179.97438 * 21 20 18 41 41 H 1.08998 * 113.76852 * 221.14632 * 26 17 16 42 42 H 1.09003 * 113.76845 * 89.75490 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5490 0.0004 5 6 3.2398 3.4005 0.0008 6 6 4.5360 2.9031 0.0013 7 6 4.7692 1.5450 0.0009 8 6 3.6981 0.6588 0.0005 9 8 3.6125 -0.6857 0.0005 10 6 2.3235 -1.0853 0.0006 11 6 1.8715 -2.4837 0.0011 12 8 0.6820 -2.7386 0.0016 13 7 2.7749 -3.4840 0.0011 14 6 2.3244 -4.8780 0.0011 15 6 3.5401 -5.8068 0.0003 16 6 4.0877 -6.1098 -1.4062 17 7 4.2314 -7.5045 -0.9380 18 6 5.0250 -8.5604 -1.2990 19 1 4.9349 -9.5048 -0.7829 20 6 5.9452 -8.4170 -2.3283 21 7 6.0554 -7.2659 -2.9569 22 14 7.0283 -9.8572 -2.8203 23 1 6.1751 -10.9915 -3.2573 24 1 7.9179 -9.4488 -3.9370 25 1 7.8523 -10.2767 -1.6583 26 6 3.1784 -7.3012 0.0759 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.1652 2.9411 0.0002 31 1 3.0749 4.4679 0.0016 32 1 5.3709 3.5881 -0.0030 33 1 5.7820 1.1698 0.0008 34 1 3.7234 -3.2808 0.0003 35 1 1.7238 -5.0657 0.8910 36 1 1.7236 -5.0657 -0.8889 37 1 4.3065 -5.5042 0.7139 38 1 3.3513 -5.9867 -2.2003 39 1 5.0360 -5.6184 -1.6238 40 1 6.6986 -7.1656 -3.6759 41 1 3.4019 -7.7593 1.0394 42 1 2.1742 -7.5288 -0.2819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032172419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:13 Heat of formation + Delta-G solvation = 45.585505 kcal Electronic energy + Delta-G solvation = -24827.676485 eV Core-core repulsion = 21161.930547 eV Total energy + Delta-G solvation = -3665.745938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72032 -39.60078 -38.15080 -37.92507 -34.77392 -33.91185 -32.20699 -30.85366 -30.32804 -29.03491 -27.67016 -25.95634 -24.81226 -23.98534 -22.95557 -21.97684 -20.91405 -20.30068 -19.26074 -18.07675 -17.28160 -16.77958 -16.62703 -16.46570 -15.81666 -15.24228 -15.09569 -14.70886 -14.41549 -14.14382 -13.90685 -13.64463 -13.39041 -13.22458 -12.96943 -12.92234 -12.54346 -12.50786 -12.34502 -12.05024 -11.43097 -11.34243 -11.23290 -11.00284 -10.74411 -10.61663 -10.23861 -10.13422 -9.84408 -9.79818 -9.45376 -9.03093 -8.90813 -8.80264 -8.37708 -6.88973 -5.77134 -3.09578 0.34758 1.05147 1.62800 2.30681 3.08495 3.16158 3.39366 3.39528 3.43482 3.44831 4.21325 4.29461 4.44813 4.56885 4.68960 4.81545 4.94855 5.07704 5.13127 5.19279 5.27109 5.33840 5.37988 5.54152 5.61836 5.71028 5.75519 5.79908 5.88681 5.96504 6.02187 6.10971 6.16810 6.20727 6.27150 6.31837 6.47819 6.60198 6.70055 6.80747 7.20737 7.33620 7.49935 7.54500 7.97403 8.06844 9.04030 9.70385 10.59091 11.39957 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002595 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.514725 B =10786.813841 C =11909.944379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.110 4.110 8 C 0.072 3.928 9 O -0.181 6.181 10 C -0.029 4.029 11 C 0.596 3.404 12 O -0.519 6.519 13 N -0.706 5.706 14 C 0.129 3.871 15 C -0.155 4.155 16 C 0.168 3.832 17 N -0.613 5.613 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.130 3.870 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 22.355 7.741 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.159 4.159 6 C -0.104 4.104 7 C -0.128 4.128 8 C 0.024 3.976 9 O -0.082 6.082 10 C -0.078 4.078 11 C 0.381 3.619 12 O -0.398 6.398 13 N -0.355 5.355 14 C 0.005 3.995 15 C -0.174 4.174 16 C 0.043 3.957 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.003 3.997 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.381 21.749 7.541 24.173 hybrid contribution 1.087 -0.616 -0.488 1.341 sum -6.294 21.133 7.054 23.151 Atomic orbital electron populations 1.20434 0.87454 1.03799 1.03154 1.21382 0.97022 0.89463 1.01004 1.19828 0.92405 0.94339 1.07651 1.20340 0.99769 0.90247 0.97449 1.20788 0.92260 1.00024 1.02867 1.21007 0.97523 0.93742 0.98096 1.20045 0.96968 0.91175 1.04631 1.19739 0.95531 0.81158 1.01181 1.84047 1.27079 1.20858 1.76252 1.21876 0.81028 0.94973 1.09957 1.16635 0.85965 0.81661 0.77676 1.90834 1.15315 1.82433 1.51192 1.46013 1.10150 1.06606 1.72767 1.21582 0.97611 0.78089 1.02198 1.23833 0.96268 0.94946 1.02402 1.22366 0.98481 0.85062 0.89806 1.45968 1.38924 1.10264 1.38744 1.18979 1.11674 0.90468 1.14027 0.90282 1.24787 0.99905 0.97395 0.98405 1.69794 1.38269 1.23133 1.25697 0.86194 0.80157 0.81490 0.77879 1.21184 1.21556 1.21075 1.22481 0.92757 0.90867 0.93605 0.90471 0.88916 0.91462 0.85327 0.85183 0.84577 0.84572 0.75627 0.91401 0.90872 0.89083 0.95428 0.90924 0.93591 0.93587 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.81 36.00 0.35 -0.62 16 2 C -0.09 -1.08 6.39 -102.28 -0.65 -1.74 16 3 C -0.14 -1.65 6.37 -105.19 -0.67 -2.32 16 4 C -0.06 -0.53 10.06 -39.62 -0.40 -0.93 16 5 C -0.14 -1.04 9.98 -39.94 -0.40 -1.43 16 6 C -0.09 -0.64 10.01 -39.52 -0.40 -1.03 16 7 C -0.11 -1.04 10.07 -39.45 -0.40 -1.44 16 8 C 0.07 0.89 7.41 -38.35 -0.28 0.60 16 9 O -0.18 -2.47 10.28 2.77 0.03 -2.44 16 10 C -0.03 -0.40 7.07 -36.91 -0.26 -0.66 16 11 C 0.60 9.00 7.79 -12.72 -0.10 8.90 16 12 O -0.52 -8.75 14.62 5.23 0.08 -8.67 16 13 N -0.71 -10.22 5.55 -61.53 -0.34 -10.56 16 14 C 0.13 1.97 5.51 -4.05 -0.02 1.95 16 15 C -0.15 -2.75 3.93 -89.70 -0.35 -3.10 16 16 C 0.17 3.88 7.08 -2.84 -0.02 3.86 16 17 N -0.61 -15.71 3.70 -177.66 -0.66 -16.37 16 18 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.40 11.39 55.49 0.63 -26.76 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.13 2.59 8.51 -2.96 -0.03 2.56 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.10 6.37 -51.93 -0.33 0.77 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.41 5.50 8.19 -40.82 -0.33 5.17 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.07 1.85 7.16 -51.93 -0.37 1.47 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -33.05 357.29 -9.41 -42.46 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.63 Total: 1.99 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.88 Total: -2.23 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.37 Total: -53.69 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.10 Total: -11.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.05 -9.41 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032172419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.044 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds