Wall clock time and date at job start Tue Mar 31 2020 10:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46245 * 126.96407 * 2 1 4 4 C 1.39709 * 134.18820 * 0.02562 * 3 2 1 5 5 C 1.36613 * 119.71079 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44675 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5 9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7 11 11 C 1.46970 * 125.13537 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00258 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00021 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.53949 * 113.74025 * 273.73986 * 15 14 13 17 17 N 1.47815 * 86.03924 * 222.08228 * 16 15 14 18 18 C 1.36928 * 134.46009 * 204.64248 * 17 16 15 19 19 H 1.08004 * 120.00084 * 179.86890 * 18 17 16 20 20 C 1.38811 * 120.00047 * 359.86680 * 18 17 16 21 21 N 1.31611 * 120.00233 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46878 * 60.00437 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47616 * 300.00246 * 22 20 18 26 26 C 1.47589 * 91.04696 * 24.54710 * 17 16 15 27 27 H 1.09003 * 109.47075 * 89.99495 * 1 2 3 28 28 H 1.08995 * 109.47686 * 210.00377 * 1 2 3 29 29 H 1.09002 * 109.46679 * 330.00134 * 1 2 3 30 30 H 1.07996 * 120.13949 * 359.95436 * 4 3 2 31 31 H 1.08002 * 119.77753 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.63173 * 179.72184 * 6 5 4 33 33 H 1.08006 * 120.07020 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99826 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47118 * 300.00022 * 14 13 11 36 36 H 1.09003 * 109.47393 * 59.99339 * 14 13 11 37 37 H 1.09003 * 112.94651 * 45.32905 * 15 14 13 38 38 H 1.09003 * 113.77019 * 336.34573 * 16 15 14 39 39 H 1.09001 * 113.77132 * 107.74721 * 16 15 14 40 40 H 0.96994 * 120.00549 * 179.97438 * 21 20 18 41 41 H 1.08998 * 113.76852 * 221.14632 * 26 17 16 42 42 H 1.09003 * 113.76845 * 89.75490 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5490 0.0004 5 6 3.2398 3.4005 0.0008 6 6 4.5360 2.9031 0.0013 7 6 4.7692 1.5450 0.0009 8 6 3.6981 0.6588 0.0005 9 8 3.6125 -0.6857 0.0005 10 6 2.3235 -1.0853 0.0006 11 6 1.8715 -2.4837 0.0011 12 8 0.6820 -2.7386 0.0016 13 7 2.7749 -3.4840 0.0011 14 6 2.3244 -4.8780 0.0011 15 6 3.5401 -5.8068 0.0003 16 6 4.0877 -6.1098 -1.4062 17 7 4.2314 -7.5045 -0.9380 18 6 5.0250 -8.5604 -1.2990 19 1 4.9349 -9.5048 -0.7829 20 6 5.9452 -8.4170 -2.3283 21 7 6.0554 -7.2659 -2.9569 22 14 7.0283 -9.8572 -2.8203 23 1 6.1751 -10.9915 -3.2573 24 1 7.9179 -9.4488 -3.9370 25 1 7.8523 -10.2767 -1.6583 26 6 3.1784 -7.3012 0.0759 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.1652 2.9411 0.0002 31 1 3.0749 4.4679 0.0016 32 1 5.3709 3.5881 -0.0030 33 1 5.7820 1.1698 0.0008 34 1 3.7234 -3.2808 0.0003 35 1 1.7238 -5.0657 0.8910 36 1 1.7236 -5.0657 -0.8889 37 1 4.3065 -5.5042 0.7139 38 1 3.3513 -5.9867 -2.2003 39 1 5.0360 -5.6184 -1.6238 40 1 6.6986 -7.1656 -3.6759 41 1 3.4019 -7.7593 1.0394 42 1 2.1742 -7.5288 -0.2819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032172419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:12 Heat of formation + Delta-G solvation = 25.038675 kcal Electronic energy + Delta-G solvation = -24828.567462 eV Core-core repulsion = 21161.930547 eV Total energy + Delta-G solvation = -3666.636916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.58860 -40.82765 -39.64685 -38.79265 -36.03613 -34.87819 -34.19978 -31.57998 -31.28934 -30.45760 -28.81865 -27.48258 -26.56208 -25.05601 -23.78387 -23.54600 -21.94785 -21.27939 -20.72143 -19.22146 -18.73389 -18.08663 -17.60042 -17.46332 -16.97668 -16.85822 -16.30266 -16.01695 -15.70734 -15.34048 -14.98453 -14.81415 -14.60055 -14.36990 -14.19021 -13.98852 -13.76905 -13.32097 -13.25631 -13.21605 -13.11356 -12.85775 -12.75532 -12.58012 -12.27595 -11.93381 -11.85951 -11.63793 -11.36651 -11.17033 -10.95726 -10.86899 -10.23860 -9.67839 -9.21263 -8.93584 -7.91526 -5.25185 -0.50064 0.33849 0.76571 1.39976 1.44364 1.48039 1.54105 1.97831 2.05982 2.46712 2.70990 3.27434 3.31475 3.38900 3.52846 3.70041 3.77126 3.92295 4.03064 4.12384 4.29887 4.32265 4.41435 4.50424 4.56330 4.64479 4.72869 4.75343 4.81595 4.84389 4.93252 5.00246 5.06363 5.16306 5.22031 5.25473 5.35694 5.40830 5.47700 5.51923 5.57819 5.62118 5.92467 6.00426 6.35636 6.90369 6.90617 7.59749 8.55215 9.25196 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002595 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.514725 B =10786.813841 C =11909.944379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.079 4.079 3 C -0.164 4.164 4 C -0.064 4.064 5 C -0.135 4.135 6 C -0.072 4.072 7 C -0.129 4.129 8 C 0.045 3.955 9 O -0.197 6.197 10 C -0.063 4.063 11 C 0.598 3.402 12 O -0.542 6.542 13 N -0.705 5.705 14 C 0.141 3.859 15 C -0.118 4.118 16 C 0.164 3.836 17 N -0.646 5.646 18 C -0.236 4.236 19 H 0.085 0.915 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.980 3.020 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.129 3.871 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.412 0.588 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.013 0.987 39 H 0.041 0.959 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 24.446 8.852 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.165 4.165 4 C -0.082 4.082 5 C -0.153 4.153 6 C -0.089 4.089 7 C -0.147 4.147 8 C -0.003 4.003 9 O -0.100 6.100 10 C -0.113 4.113 11 C 0.384 3.616 12 O -0.423 6.423 13 N -0.355 5.355 14 C 0.017 3.983 15 C -0.137 4.137 16 C 0.039 3.961 17 N -0.373 5.373 18 C -0.365 4.365 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.004 3.996 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.170 0.830 31 H 0.184 0.816 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.248 0.752 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.657 23.841 8.687 26.504 hybrid contribution 1.157 -1.082 -0.808 1.778 sum -6.500 22.758 7.879 24.945 Atomic orbital electron populations 1.20479 0.86233 1.04338 1.03591 1.21782 0.97946 0.89689 0.98817 1.20060 0.91806 0.95392 1.09210 1.20728 1.01684 0.89065 0.96690 1.21274 0.91603 1.01655 1.00774 1.21518 0.98986 0.93168 0.95267 1.20415 0.96940 0.91923 1.05427 1.20305 0.96973 0.80778 1.02238 1.83981 1.26907 1.22035 1.77087 1.21666 0.81764 0.94650 1.13173 1.16744 0.85627 0.82218 0.76983 1.90806 1.16041 1.83025 1.52385 1.45934 1.10408 1.06236 1.72875 1.21362 0.96176 0.78095 1.02641 1.23424 0.96968 0.94675 0.98675 1.22273 0.96915 0.84458 0.92445 1.46399 1.40273 1.10473 1.40139 1.19413 1.11857 0.91425 1.13775 0.89738 1.25665 1.01712 1.00029 0.98886 1.69997 1.39062 1.25081 1.26203 0.85128 0.78264 0.78399 0.77396 1.20424 1.22084 1.19988 1.22688 0.91970 0.91957 0.92973 0.89931 0.90456 0.88762 0.83008 0.81617 0.81123 0.83603 0.75174 0.89464 0.91887 0.88057 0.96872 0.94055 0.94313 0.91779 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.81 71.23 0.70 -1.15 16 2 C -0.08 -2.01 6.39 -18.35 -0.12 -2.13 16 3 C -0.16 -3.70 6.37 -20.23 -0.13 -3.82 16 4 C -0.06 -0.96 10.06 22.25 0.22 -0.74 16 5 C -0.14 -1.46 9.98 22.03 0.22 -1.24 16 6 C -0.07 -0.83 10.01 22.31 0.22 -0.61 16 7 C -0.13 -2.30 10.07 22.35 0.23 -2.07 16 8 C 0.04 1.10 7.41 23.07 0.17 1.27 16 9 O -0.20 -5.65 10.28 -13.00 -0.13 -5.79 16 10 C -0.06 -1.84 7.07 24.00 0.17 -1.67 16 11 C 0.60 18.60 7.79 86.53 0.67 19.27 16 12 O -0.54 -18.64 14.62 -4.20 -0.06 -18.70 16 13 N -0.71 -20.82 5.55 -466.82 -2.59 -23.42 16 14 C 0.14 4.28 5.51 86.38 0.48 4.75 16 15 C -0.12 -4.16 3.93 -10.14 -0.04 -4.20 16 16 C 0.16 7.84 7.08 86.44 0.61 8.45 16 17 N -0.65 -33.51 3.70 -715.98 -2.65 -36.16 16 18 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 19 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 21 N -0.95 -58.55 11.39 21.65 0.25 -58.31 16 22 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.13 5.04 8.51 86.48 0.74 5.77 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.85 6.37 -2.39 -0.02 1.83 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 32 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.41 11.53 8.19 -92.71 -0.76 10.77 16 35 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.40 16 38 H 0.01 0.67 7.92 -2.39 -0.02 0.65 16 39 H 0.04 2.21 7.16 -2.39 -0.02 2.19 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -74.04 357.29 2.63 -71.41 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.29 Total: 16.92 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.51 Total: 5.72 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.00 Total: -117.88 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.20 Total: -24.49 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.04 2.63 -71.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032172419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.446 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds