Wall clock time and date at job start Tue Mar 31 2020 10:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38838 * 119.77891 * 2 1 4 4 C 1.37794 * 120.74304 * 179.97438 * 3 2 1 5 5 C 1.39022 * 119.85846 * 0.11320 * 4 3 2 6 6 O 1.34713 * 133.24743 * 180.23000 * 5 4 3 7 7 C 1.34943 * 110.86446 * 180.11362 * 6 5 4 8 8 C 1.46983 * 125.12927 * 179.82597 * 7 6 5 9 9 O 1.21662 * 119.99950 * 179.72499 * 8 7 6 10 10 N 1.34776 * 120.00059 * 359.72095 * 8 7 6 11 11 C 1.46502 * 119.99721 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46668 * 180.02562 * 11 10 8 13 13 C 1.53943 * 113.73918 * 273.73930 * 12 11 10 14 14 N 1.47819 * 86.03875 * 222.08780 * 13 12 11 15 15 C 1.36933 * 134.45689 * 204.65041 * 14 13 12 16 16 H 1.08006 * 119.99663 * 179.86814 * 15 14 13 17 17 C 1.38807 * 120.00291 * 359.85950 * 15 14 13 18 18 N 1.31616 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00115 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 90.00453 * 19 17 15 21 21 H 1.48506 * 109.47218 * 210.00577 * 19 17 15 22 22 H 1.48500 * 109.47233 * 330.00019 * 19 17 15 23 23 C 1.47580 * 91.04748 * 24.54963 * 14 13 12 24 24 C 1.35803 * 109.73880 * 359.58679 * 7 6 5 25 25 C 1.40735 * 119.15745 * 359.91015 * 5 4 3 26 26 C 1.36624 * 119.77805 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47194 * 269.97860 * 1 2 3 28 28 H 1.09006 * 109.46905 * 29.97595 * 1 2 3 29 29 H 1.09003 * 109.47026 * 149.97201 * 1 2 3 30 30 H 1.07997 * 119.62741 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06839 * 180.02562 * 4 3 2 32 32 H 0.96997 * 119.99956 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47261 * 299.99887 * 11 10 8 34 34 H 1.09002 * 109.46923 * 60.00702 * 11 10 8 35 35 H 1.08993 * 112.94736 * 45.33749 * 12 11 10 36 36 H 1.08999 * 113.77439 * 336.34874 * 13 12 11 37 37 H 1.08998 * 113.76719 * 107.75287 * 13 12 11 38 38 H 0.97001 * 119.99683 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.77409 * 221.14829 * 23 14 13 40 40 H 1.09005 * 113.76545 * 89.75428 * 23 14 13 41 41 H 1.08002 * 126.96245 * 180.26681 * 24 7 6 42 42 H 1.08003 * 120.14132 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2050 0.0000 4 6 3.5743 1.2282 0.0005 5 6 4.2866 0.0344 -0.0013 6 8 5.6022 -0.2555 0.0026 7 6 5.8003 -1.5903 -0.0042 8 6 7.1135 -2.2505 -0.0061 9 8 7.1837 -3.4650 -0.0074 10 7 8.2398 -1.5103 -0.0065 11 6 9.5487 -2.1684 -0.0078 12 6 10.6523 -1.1086 -0.0074 13 6 11.0349 -0.6117 -1.4133 14 7 12.4353 -0.6832 -0.9456 15 6 13.5999 -0.0595 -1.3061 16 1 14.5197 -0.2935 -0.7906 17 6 13.5982 0.8733 -2.3340 18 7 12.4773 1.1586 -2.9619 19 14 15.1870 1.7236 -2.8262 20 1 15.8667 0.9302 -3.8815 21 1 14.8816 3.0806 -3.3464 22 1 16.0757 1.8361 -1.6418 23 6 12.0740 -1.6943 0.0669 24 6 4.6032 -2.2316 -0.0038 25 6 3.5825 -1.1842 -0.0018 26 6 2.1855 -1.1858 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6469 2.1347 0.0004 31 1 4.0996 2.1719 0.0009 32 1 8.1838 -0.5419 -0.0052 33 1 9.6432 -2.7911 0.8817 34 1 9.6419 -2.7901 -0.8983 35 1 10.4705 -0.3061 0.7074 36 1 10.8006 -1.3195 -2.2084 37 1 10.6939 0.4008 -1.6292 38 1 12.4761 1.8107 -3.6800 39 1 12.5611 -1.5448 1.0304 40 1 12.1456 -2.7209 -0.2925 41 1 4.4383 -3.2990 -0.0043 42 1 1.6442 -2.1204 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032207417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:05 Heat of formation + Delta-G solvation = 44.159421 kcal Electronic energy + Delta-G solvation = -24431.987793 eV Core-core repulsion = 20766.180015 eV Total energy + Delta-G solvation = -3665.807778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70699 -39.62869 -38.50522 -37.96295 -34.61268 -33.06288 -32.54686 -32.17672 -30.14194 -28.85277 -27.26174 -26.05323 -24.82084 -23.99496 -22.21691 -21.94026 -21.60306 -20.65549 -19.29488 -18.02810 -17.69527 -16.74535 -16.58537 -16.11597 -15.55139 -15.35201 -15.18718 -14.73027 -14.41807 -14.32003 -14.00131 -13.83173 -13.48377 -13.33433 -13.23315 -12.94765 -12.56016 -12.40151 -12.14989 -11.98051 -11.44771 -11.35316 -11.26000 -11.02097 -10.74922 -10.65305 -10.46841 -10.36527 -9.86883 -9.80263 -9.46335 -9.03198 -8.81026 -8.74617 -8.49480 -6.89363 -5.77848 -3.10185 0.33691 1.01127 1.63718 2.27166 3.07298 3.13008 3.34386 3.38695 3.43378 3.45408 4.17703 4.34650 4.44255 4.46223 4.70992 4.80620 4.90622 5.03402 5.11402 5.15058 5.23072 5.26248 5.31903 5.33802 5.54735 5.57209 5.61459 5.78847 5.81874 5.87727 5.96356 6.05401 6.17887 6.18529 6.25216 6.30588 6.45736 6.59394 6.69093 6.78570 7.20357 7.33087 7.46939 7.54099 7.96906 8.03303 9.03584 9.69851 10.58454 11.39372 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002354 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.586210 B =11891.749688 C =12951.299072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.104 4.104 5 C 0.065 3.935 6 O -0.181 6.181 7 C -0.016 4.016 8 C 0.594 3.406 9 O -0.521 6.521 10 N -0.705 5.705 11 C 0.128 3.872 12 C -0.155 4.155 13 C 0.168 3.832 14 N -0.613 5.613 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.129 3.871 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.170 0.830 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.371 -2.099 7.794 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.103 4.103 4 C -0.123 4.123 5 C 0.017 3.983 6 O -0.083 6.083 7 C -0.066 4.066 8 C 0.379 3.621 9 O -0.399 6.399 10 N -0.354 5.354 11 C 0.004 3.996 12 C -0.174 4.174 13 C 0.043 3.957 14 N -0.339 5.339 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.003 3.997 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.081 4.081 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.244 0.756 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.187 0.813 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.826 -2.532 7.605 25.139 hybrid contribution 0.843 0.806 -0.481 1.262 sum -22.983 -1.726 7.124 24.124 Atomic orbital electron populations 1.20760 0.90514 1.02992 1.02460 1.19537 0.96518 0.92652 1.02062 1.20887 0.92438 0.98121 0.98866 1.20015 0.93103 0.94926 1.04242 1.19749 0.80944 0.95720 1.01876 1.84047 1.24578 1.23659 1.76010 1.22123 0.96081 0.80439 1.07978 1.16681 0.81465 0.86251 0.77734 1.90880 1.85834 1.12122 1.51081 1.46019 1.05844 1.10978 1.72566 1.21604 0.79896 0.95804 1.02262 1.23837 0.93461 0.97733 1.02419 1.22368 0.83787 0.99786 0.89806 1.45975 1.05395 1.43667 1.38853 1.19029 0.85906 1.16051 1.14053 0.90219 1.24792 0.97370 0.99961 0.98442 1.69812 1.24790 1.36536 1.25780 0.86112 0.82428 0.78799 0.78379 1.21614 1.21625 1.20603 1.22483 0.90490 0.93117 0.93630 1.22704 0.89190 1.00091 1.02129 1.19907 0.94564 0.92474 1.07040 1.20201 0.91023 0.98349 0.98556 0.91104 0.91349 0.91428 0.84589 0.84508 0.75553 0.91353 0.90814 0.89052 0.95410 0.90906 0.93638 0.93567 0.94561 0.81263 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.00 36.01 0.36 -0.18 16 2 C -0.11 -0.83 5.85 -104.98 -0.61 -1.45 16 3 C -0.09 -0.65 9.66 -39.52 -0.38 -1.03 16 4 C -0.10 -0.99 10.07 -39.45 -0.40 -1.39 16 5 C 0.07 0.79 7.41 -38.35 -0.28 0.50 16 6 O -0.18 -2.41 10.28 2.79 0.03 -2.39 16 7 C -0.02 -0.22 7.07 -36.91 -0.26 -0.48 16 8 C 0.59 8.94 7.80 -12.72 -0.10 8.84 16 9 O -0.52 -9.08 16.83 5.22 0.09 -8.99 16 10 N -0.70 -10.11 5.55 -61.52 -0.34 -10.46 16 11 C 0.13 1.96 5.51 -4.04 -0.02 1.94 16 12 C -0.15 -2.74 3.93 -89.69 -0.35 -3.09 16 13 C 0.17 3.86 7.08 -2.84 -0.02 3.84 16 14 N -0.61 -15.67 3.70 -177.67 -0.66 -16.33 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -27.41 11.39 55.49 0.63 -26.77 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.13 2.58 8.51 -2.97 -0.03 2.55 16 24 C -0.12 -1.46 10.80 -37.24 -0.40 -1.86 16 25 C -0.14 -1.59 6.38 -105.19 -0.67 -2.26 16 26 C -0.06 -0.57 9.68 -39.62 -0.38 -0.95 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.41 5.41 8.19 -40.82 -0.33 5.08 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.21 7.88 -51.93 -0.41 0.80 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.07 1.84 7.16 -51.93 -0.37 1.47 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.70 8.10 -51.93 -0.42 0.27 16 41 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -33.27 360.91 -9.36 -42.63 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.71 Total: 1.49 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.81 Total: -1.83 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.37 Total: -53.56 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.12 Total: -11.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.27 -9.36 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.794 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds