Wall clock time and date at job start Tue Mar 31 2020 10:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38838 * 119.77891 * 2 1 4 4 C 1.37794 * 120.74304 * 179.97438 * 3 2 1 5 5 C 1.39022 * 119.85846 * 0.11320 * 4 3 2 6 6 O 1.34713 * 133.24743 * 180.23000 * 5 4 3 7 7 C 1.34943 * 110.86446 * 180.11362 * 6 5 4 8 8 C 1.46983 * 125.12927 * 179.82597 * 7 6 5 9 9 O 1.21662 * 119.99950 * 179.72499 * 8 7 6 10 10 N 1.34776 * 120.00059 * 359.72095 * 8 7 6 11 11 C 1.46502 * 119.99721 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46668 * 180.02562 * 11 10 8 13 13 C 1.53943 * 113.73918 * 273.73930 * 12 11 10 14 14 N 1.47819 * 86.03875 * 222.08780 * 13 12 11 15 15 C 1.36933 * 134.45689 * 204.65041 * 14 13 12 16 16 H 1.08006 * 119.99663 * 179.86814 * 15 14 13 17 17 C 1.38807 * 120.00291 * 359.85950 * 15 14 13 18 18 N 1.31616 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00115 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 90.00453 * 19 17 15 21 21 H 1.48506 * 109.47218 * 210.00577 * 19 17 15 22 22 H 1.48500 * 109.47233 * 330.00019 * 19 17 15 23 23 C 1.47580 * 91.04748 * 24.54963 * 14 13 12 24 24 C 1.35803 * 109.73880 * 359.58679 * 7 6 5 25 25 C 1.40735 * 119.15745 * 359.91015 * 5 4 3 26 26 C 1.36624 * 119.77805 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47194 * 269.97860 * 1 2 3 28 28 H 1.09006 * 109.46905 * 29.97595 * 1 2 3 29 29 H 1.09003 * 109.47026 * 149.97201 * 1 2 3 30 30 H 1.07997 * 119.62741 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06839 * 180.02562 * 4 3 2 32 32 H 0.96997 * 119.99956 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47261 * 299.99887 * 11 10 8 34 34 H 1.09002 * 109.46923 * 60.00702 * 11 10 8 35 35 H 1.08993 * 112.94736 * 45.33749 * 12 11 10 36 36 H 1.08999 * 113.77439 * 336.34874 * 13 12 11 37 37 H 1.08998 * 113.76719 * 107.75287 * 13 12 11 38 38 H 0.97001 * 119.99683 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.77409 * 221.14829 * 23 14 13 40 40 H 1.09005 * 113.76545 * 89.75428 * 23 14 13 41 41 H 1.08002 * 126.96245 * 180.26681 * 24 7 6 42 42 H 1.08003 * 120.14132 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2050 0.0000 4 6 3.5743 1.2282 0.0005 5 6 4.2866 0.0344 -0.0013 6 8 5.6022 -0.2555 0.0026 7 6 5.8003 -1.5903 -0.0042 8 6 7.1135 -2.2505 -0.0061 9 8 7.1837 -3.4650 -0.0074 10 7 8.2398 -1.5103 -0.0065 11 6 9.5487 -2.1684 -0.0078 12 6 10.6523 -1.1086 -0.0074 13 6 11.0349 -0.6117 -1.4133 14 7 12.4353 -0.6832 -0.9456 15 6 13.5999 -0.0595 -1.3061 16 1 14.5197 -0.2935 -0.7906 17 6 13.5982 0.8733 -2.3340 18 7 12.4773 1.1586 -2.9619 19 14 15.1870 1.7236 -2.8262 20 1 15.8667 0.9302 -3.8815 21 1 14.8816 3.0806 -3.3464 22 1 16.0757 1.8361 -1.6418 23 6 12.0740 -1.6943 0.0669 24 6 4.6032 -2.2316 -0.0038 25 6 3.5825 -1.1842 -0.0018 26 6 2.1855 -1.1858 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6469 2.1347 0.0004 31 1 4.0996 2.1719 0.0009 32 1 8.1838 -0.5419 -0.0052 33 1 9.6432 -2.7911 0.8817 34 1 9.6419 -2.7901 -0.8983 35 1 10.4705 -0.3061 0.7074 36 1 10.8006 -1.3195 -2.2084 37 1 10.6939 0.4008 -1.6292 38 1 12.4761 1.8107 -3.6800 39 1 12.5611 -1.5448 1.0304 40 1 12.1456 -2.7209 -0.2925 41 1 4.4383 -3.2990 -0.0043 42 1 1.6442 -2.1204 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032207417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:04 Heat of formation + Delta-G solvation = 23.535751 kcal Electronic energy + Delta-G solvation = -24432.882103 eV Core-core repulsion = 20766.180015 eV Total energy + Delta-G solvation = -3666.702087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.57951 -40.85735 -39.66269 -39.17226 -35.95817 -34.22270 -33.91528 -33.14331 -31.21930 -30.30119 -28.17204 -27.42003 -26.56179 -25.12236 -23.62745 -22.83972 -22.52923 -21.74921 -20.79760 -19.20657 -18.72280 -18.48920 -17.56101 -17.34052 -16.97686 -16.46399 -16.23491 -16.07325 -15.73365 -15.42725 -15.07205 -14.87740 -14.54197 -14.44442 -14.20368 -14.12001 -14.04301 -13.32390 -13.12043 -12.98605 -12.89916 -12.71848 -12.60070 -12.54809 -12.28263 -11.92066 -11.90791 -11.67670 -11.49068 -11.31998 -11.23638 -10.87881 -10.27052 -9.49137 -9.30161 -8.93375 -7.91865 -5.25266 -0.52154 0.28716 0.75947 1.35122 1.44534 1.46701 1.55295 1.96955 2.02970 2.46517 2.63768 3.26054 3.30459 3.38846 3.57446 3.71690 3.85947 3.91503 4.00954 4.05030 4.25300 4.32212 4.39237 4.45776 4.55903 4.74178 4.75334 4.81090 4.83294 4.84942 4.92258 5.05962 5.08637 5.13178 5.20428 5.24878 5.25957 5.29109 5.52295 5.56975 5.58829 5.62465 5.92668 5.98005 6.32664 6.86620 6.90799 7.59705 8.55129 9.25173 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002354 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.586210 B =11891.749688 C =12951.299072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.074 4.074 4 C -0.119 4.119 5 C 0.040 3.960 6 O -0.195 6.195 7 C -0.044 4.044 8 C 0.598 3.402 9 O -0.550 6.550 10 N -0.702 5.702 11 C 0.139 3.861 12 C -0.117 4.117 13 C 0.164 3.836 14 N -0.646 5.646 15 C -0.234 4.234 16 H 0.085 0.915 17 C -0.071 4.071 18 N -0.955 5.955 19 Si 0.980 3.020 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.129 3.871 24 C -0.110 4.110 25 C -0.159 4.159 26 C -0.070 4.070 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.014 0.986 37 H 0.042 0.958 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.181 0.819 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.176 -1.848 8.937 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.092 4.092 4 C -0.138 4.138 5 C -0.008 4.008 6 O -0.098 6.098 7 C -0.094 4.094 8 C 0.385 3.615 9 O -0.430 6.430 10 N -0.351 5.351 11 C 0.016 3.984 12 C -0.137 4.137 13 C 0.038 3.962 14 N -0.373 5.373 15 C -0.362 4.362 16 H 0.103 0.897 17 C -0.264 4.264 18 N -0.604 5.604 19 Si 0.808 3.192 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.191 1.191 23 C 0.004 3.996 24 C -0.130 4.130 25 C -0.160 4.160 26 C -0.088 4.088 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.187 0.813 31 H 0.167 0.833 32 H 0.250 0.750 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.199 0.801 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.637 -2.294 8.783 27.197 hybrid contribution 1.231 0.742 -0.811 1.651 sum -24.406 -1.552 7.971 25.722 Atomic orbital electron populations 1.20834 0.88106 1.04151 1.03492 1.19973 0.98235 0.92132 1.00246 1.21358 0.91784 0.99621 0.96441 1.20370 0.94008 0.94692 1.04699 1.20261 0.80548 0.97056 1.02930 1.83988 1.25649 1.23386 1.76728 1.21828 0.95681 0.80992 1.10873 1.16775 0.81954 0.85916 0.76899 1.90850 1.86404 1.13182 1.52574 1.45933 1.05496 1.11238 1.72478 1.21393 0.79522 0.94811 1.02721 1.23427 0.93522 0.98047 0.98708 1.22282 0.83463 0.97961 0.92451 1.46404 1.05438 1.45169 1.40242 1.19453 0.87161 1.15885 1.13747 0.89715 1.25663 1.00566 1.01205 0.98953 1.70008 1.26783 1.37309 1.26329 0.85055 0.78792 0.77161 0.78192 1.21515 1.22026 1.19075 1.22694 0.91305 0.92631 0.93008 1.22982 0.89121 1.00862 1.00051 1.20116 0.95611 0.91892 1.08366 1.20537 0.90089 0.99989 0.98135 0.89986 0.89924 0.90652 0.81347 0.83276 0.74956 0.89407 0.91827 0.87925 0.96858 0.93981 0.94310 0.91747 0.93108 0.80121 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.00 71.24 0.71 0.03 16 2 C -0.11 -1.35 5.85 -20.10 -0.12 -1.46 16 3 C -0.07 -0.94 9.66 22.31 0.22 -0.73 16 4 C -0.12 -2.13 10.07 22.35 0.23 -1.90 16 5 C 0.04 0.96 7.41 23.07 0.17 1.13 16 6 O -0.20 -5.36 10.28 -12.93 -0.13 -5.49 16 7 C -0.04 -1.23 7.07 24.00 0.17 -1.06 16 8 C 0.60 18.30 7.80 86.53 0.67 18.97 16 9 O -0.55 -19.32 16.83 -4.23 -0.07 -19.39 16 10 N -0.70 -20.25 5.55 -466.78 -2.59 -22.84 16 11 C 0.14 4.17 5.51 86.38 0.48 4.65 16 12 C -0.12 -4.10 3.93 -10.13 -0.04 -4.14 16 13 C 0.16 7.74 7.08 86.44 0.61 8.35 16 14 N -0.65 -33.27 3.70 -716.03 -2.65 -35.92 16 15 C -0.23 -13.27 10.70 84.03 0.90 -12.38 16 16 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 17 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 18 N -0.96 -58.47 11.39 21.65 0.25 -58.23 16 19 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.13 4.98 8.51 86.49 0.74 5.71 16 24 C -0.11 -2.67 10.80 23.79 0.26 -2.42 16 25 C -0.16 -3.56 6.38 -20.23 -0.13 -3.69 16 26 C -0.07 -1.13 9.68 22.25 0.22 -0.91 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.32 8.08 -2.38 -0.02 0.30 16 29 H 0.07 0.39 8.08 -2.39 -0.02 0.37 16 30 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.41 11.14 8.19 -92.71 -0.76 10.38 16 33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.08 7.88 -2.39 -0.02 2.06 16 35 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.01 0.67 7.92 -2.39 -0.02 0.65 16 37 H 0.04 2.23 7.16 -2.39 -0.02 2.21 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 41 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -73.55 360.91 2.65 -70.89 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.28 Total: 16.20 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.54 Total: 6.52 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -5.00 Total: -116.99 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.20 Total: -24.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -73.55 2.65 -70.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.431 kcal (2) G-P(sol) polarization free energy of solvation -73.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds