Wall clock time and date at job start Tue Mar 31 2020 10:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37878 * 120.01728 * 2 1 4 4 C 1.38640 * 120.65813 * 179.97438 * 3 2 1 5 5 C 1.37891 * 120.19966 * 359.97438 * 4 3 2 6 6 C 1.39060 * 119.62720 * 0.02562 * 5 4 3 7 7 C 1.47664 * 134.26621 * 180.02562 * 6 5 4 8 8 C 1.47075 * 127.14078 * 359.94165 * 7 6 5 9 9 O 1.21655 * 119.99908 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00142 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47404 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77601 * 303.72538 * 12 11 10 14 14 C 1.53495 * 113.47041 * 172.93944 * 12 11 10 15 15 C 1.53497 * 83.34454 * 219.15595 * 14 12 11 16 16 N 1.47066 * 113.46479 * 74.50242 * 12 11 10 17 17 C 1.36937 * 136.06113 * 321.64192 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47363 * 60.00463 * 21 19 17 23 23 H 1.48506 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47174 * 300.00290 * 21 19 17 25 25 C 1.36051 * 105.72081 * 180.20261 * 7 6 5 26 26 O 1.33807 * 109.86103 * 359.62478 * 25 7 6 27 27 C 1.34914 * 111.34764 * 0.40149 * 26 25 7 28 28 H 1.09001 * 109.46283 * 270.02559 * 1 2 3 29 29 H 1.08995 * 109.46778 * 30.02021 * 1 2 3 30 30 H 1.08995 * 109.46929 * 150.02606 * 1 2 3 31 31 H 1.08006 * 119.67456 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.90314 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.18517 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00230 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47316 * 59.99433 * 11 10 8 36 36 H 1.09006 * 109.47204 * 299.99927 * 11 10 8 37 37 H 1.09006 * 114.20556 * 332.74032 * 14 12 11 38 38 H 1.08994 * 114.20812 * 105.36675 * 14 12 11 39 39 H 1.09007 * 113.46266 * 271.28548 * 15 14 12 40 40 H 1.08993 * 113.46849 * 140.85107 * 15 14 12 41 41 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 42 42 H 1.07999 * 125.07352 * 179.73261 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1939 0.0000 4 6 3.5831 1.2094 0.0005 5 6 4.2900 0.0254 0.0016 6 6 3.6046 -1.1845 0.0016 7 6 4.0166 -2.6025 0.0030 8 6 5.3902 -3.1281 0.0038 9 8 6.3348 -2.3615 0.0028 10 7 5.6025 -4.4590 0.0046 11 6 6.9707 -4.9826 0.0047 12 6 6.9316 -6.5121 0.0063 13 1 6.3632 -6.9188 0.8427 14 6 8.3128 -7.1591 -0.1664 15 6 7.5393 -8.1541 -1.0427 16 7 6.5560 -7.0896 -1.2930 17 6 5.6743 -6.7771 -2.2931 18 1 5.0462 -5.9029 -2.2056 19 6 5.5884 -7.5834 -3.4198 20 7 6.3542 -8.6486 -3.5266 21 14 4.3862 -7.1567 -4.7843 22 1 4.7110 -5.8137 -5.3282 23 1 4.4875 -8.1677 -5.8673 24 1 3.0038 -7.1499 -4.2418 25 6 2.8618 -3.3219 -0.0025 26 8 1.8105 -2.4941 0.0012 27 6 2.2020 -1.2030 0.0005 28 1 -0.3632 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6517 2.1263 -0.0004 32 1 4.1110 2.1516 0.0009 33 1 5.3699 0.0378 0.0024 34 1 4.8493 -5.0703 0.0050 35 1 7.4938 -4.6319 0.8944 36 1 7.4936 -4.6330 -0.8856 37 1 9.0288 -6.5451 -0.7128 38 1 8.7227 -7.5884 0.7477 39 1 7.1329 -8.9983 -0.4856 40 1 8.0840 -8.4607 -1.9356 41 1 6.2940 -9.2122 -4.3138 42 1 2.8025 -4.4002 -0.0072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038340468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:03 Heat of formation + Delta-G solvation = 47.330679 kcal Electronic energy + Delta-G solvation = -25459.638912 eV Core-core repulsion = 21793.968651 eV Total energy + Delta-G solvation = -3665.670262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67399 -39.26793 -38.21984 -38.03149 -34.11659 -33.68991 -32.27804 -31.62096 -29.83815 -28.08747 -27.52622 -27.04407 -23.82565 -23.51223 -22.52237 -22.46074 -21.42599 -19.84414 -19.15412 -17.93650 -17.25536 -16.70046 -16.41564 -15.91864 -15.67256 -15.34936 -15.26777 -14.48364 -14.43488 -14.09548 -13.78798 -13.67067 -13.49994 -13.22226 -12.94027 -12.79999 -12.51858 -12.06114 -11.93166 -11.83233 -11.56685 -11.15610 -11.09235 -11.02086 -10.80234 -10.62354 -10.07043 -10.05275 -9.88737 -9.76844 -9.27302 -8.85518 -8.75923 -8.65484 -8.21471 -6.94983 -5.81643 -3.14607 0.67170 1.19103 1.72091 2.53724 3.33913 3.34643 3.39945 3.40942 3.44342 3.72050 4.30681 4.38525 4.48278 4.64540 4.70162 5.05871 5.11577 5.21582 5.24472 5.29755 5.32426 5.36563 5.37584 5.53071 5.59512 5.68866 5.77036 5.87433 6.06679 6.08271 6.16706 6.24712 6.29761 6.35731 6.37039 6.47964 6.56262 6.67257 6.82753 6.94593 7.17867 7.35115 7.53266 7.83050 7.92677 8.49503 8.97605 9.65331 10.58036 11.35372 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003658 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.529858 B = 7651.921673 C = 8824.644477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.100 4.100 4 C -0.131 4.131 5 C -0.065 4.065 6 C -0.086 4.086 7 C -0.223 4.223 8 C 0.583 3.417 9 O -0.544 6.544 10 N -0.708 5.708 11 C 0.123 3.877 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.161 4.161 15 C 0.152 3.848 16 N -0.601 5.601 17 C -0.217 4.217 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.067 3.933 26 O -0.182 6.182 27 C 0.044 3.956 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.400 0.600 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 14.268 10.045 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.074 4.074 3 C -0.118 4.118 4 C -0.149 4.149 5 C -0.083 4.083 6 C -0.088 4.088 7 C -0.227 4.227 8 C 0.370 3.630 9 O -0.424 6.424 10 N -0.358 5.358 11 C -0.001 4.001 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.200 4.200 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.344 4.344 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.737 3.263 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.002 4.002 26 O -0.081 6.081 27 C -0.002 4.002 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.850 14.672 9.692 19.257 hybrid contribution -0.930 -0.387 -0.829 1.305 sum -8.780 14.285 8.863 18.966 Atomic orbital electron populations 1.20736 0.90351 1.03166 1.02589 1.18763 0.96138 0.88302 1.04195 1.20811 0.94212 0.96285 1.00480 1.21077 0.93903 0.97997 1.01950 1.20714 1.00962 0.89792 0.96816 1.19423 0.92271 0.92828 1.04235 1.21103 0.94283 0.92647 1.14705 1.17061 0.86703 0.82470 0.76722 1.90746 1.43336 1.57345 1.50930 1.45806 1.10298 1.05738 1.73969 1.21845 0.81854 0.94884 1.01526 1.22430 0.94449 0.90503 0.90746 0.93421 1.23655 0.95794 1.00561 0.99951 1.22028 0.88606 0.90504 0.96270 1.45679 1.45592 1.26893 1.14564 1.18774 1.13699 1.07431 0.94543 0.90339 1.24764 0.99859 0.97273 0.98273 1.69813 1.41152 1.16226 1.29167 0.86286 0.80611 0.77513 0.81884 1.21074 1.21468 1.21176 1.24584 0.83433 0.96117 0.96046 1.83836 1.34727 1.14586 1.74984 1.19390 0.92449 0.83438 1.04942 0.91006 0.91085 0.91295 0.84828 0.85137 0.84438 0.76575 0.92070 0.90887 0.90179 0.92296 0.95733 0.90952 0.93572 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.02 36.01 0.36 -0.57 16 2 C -0.07 -0.82 5.89 -104.49 -0.62 -1.44 16 3 C -0.10 -0.98 9.66 -39.56 -0.38 -1.37 16 4 C -0.13 -1.42 10.04 -39.56 -0.40 -1.81 16 5 C -0.06 -0.90 9.88 -39.40 -0.39 -1.29 16 6 C -0.09 -1.32 6.29 -104.98 -0.66 -1.98 16 7 C -0.22 -3.48 6.31 -103.25 -0.65 -4.13 16 8 C 0.58 10.38 7.80 -12.68 -0.10 10.28 16 9 O -0.54 -11.23 16.29 5.23 0.09 -11.14 16 10 N -0.71 -11.92 5.33 -61.49 -0.33 -12.25 16 11 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 12 C 0.13 2.36 4.10 -72.40 -0.30 2.06 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.16 -2.85 8.03 -26.22 -0.21 -3.07 16 15 C 0.15 3.39 7.40 -8.51 -0.06 3.33 16 16 N -0.60 -14.28 3.65 -177.00 -0.65 -14.92 16 17 C -0.22 -5.69 10.55 -15.06 -0.16 -5.85 16 18 H 0.08 1.95 7.50 -52.49 -0.39 1.56 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -26.55 11.51 55.49 0.64 -25.91 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.07 0.85 11.52 29.95 0.34 1.20 16 26 O -0.18 -2.43 10.53 5.32 0.06 -2.37 16 27 C 0.04 0.61 7.05 -38.56 -0.27 0.34 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.99 7.54 -52.49 -0.40 1.60 16 34 H 0.40 6.13 7.28 -40.82 -0.30 5.83 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.22 2.04 7.41 -52.49 -0.39 1.65 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -33.03 358.15 -9.05 -42.09 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.62 Total: 4.74 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.61 Total: -2.34 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.34 Total: -53.08 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.14 Total: -13.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.03 -9.05 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038340468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.418 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds