Wall clock time and date at job start Tue Mar 31 2020 10:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37878 * 120.01728 * 2 1 4 4 C 1.38640 * 120.65813 * 179.97438 * 3 2 1 5 5 C 1.37891 * 120.19966 * 359.97438 * 4 3 2 6 6 C 1.39060 * 119.62720 * 0.02562 * 5 4 3 7 7 C 1.47664 * 134.26621 * 180.02562 * 6 5 4 8 8 C 1.47075 * 127.14078 * 359.94165 * 7 6 5 9 9 O 1.21655 * 119.99908 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00142 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47404 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77601 * 303.72538 * 12 11 10 14 14 C 1.53495 * 113.47041 * 172.93944 * 12 11 10 15 15 C 1.53497 * 83.34454 * 219.15595 * 14 12 11 16 16 N 1.47066 * 113.46479 * 74.50242 * 12 11 10 17 17 C 1.36937 * 136.06113 * 321.64192 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47363 * 60.00463 * 21 19 17 23 23 H 1.48506 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47174 * 300.00290 * 21 19 17 25 25 C 1.36051 * 105.72081 * 180.20261 * 7 6 5 26 26 O 1.33807 * 109.86103 * 359.62478 * 25 7 6 27 27 C 1.34914 * 111.34764 * 0.40149 * 26 25 7 28 28 H 1.09001 * 109.46283 * 270.02559 * 1 2 3 29 29 H 1.08995 * 109.46778 * 30.02021 * 1 2 3 30 30 H 1.08995 * 109.46929 * 150.02606 * 1 2 3 31 31 H 1.08006 * 119.67456 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.90314 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.18517 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00230 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47316 * 59.99433 * 11 10 8 36 36 H 1.09006 * 109.47204 * 299.99927 * 11 10 8 37 37 H 1.09006 * 114.20556 * 332.74032 * 14 12 11 38 38 H 1.08994 * 114.20812 * 105.36675 * 14 12 11 39 39 H 1.09007 * 113.46266 * 271.28548 * 15 14 12 40 40 H 1.08993 * 113.46849 * 140.85107 * 15 14 12 41 41 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 42 42 H 1.07999 * 125.07352 * 179.73261 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1939 0.0000 4 6 3.5831 1.2094 0.0005 5 6 4.2900 0.0254 0.0016 6 6 3.6046 -1.1845 0.0016 7 6 4.0166 -2.6025 0.0030 8 6 5.3902 -3.1281 0.0038 9 8 6.3348 -2.3615 0.0028 10 7 5.6025 -4.4590 0.0046 11 6 6.9707 -4.9826 0.0047 12 6 6.9316 -6.5121 0.0063 13 1 6.3632 -6.9188 0.8427 14 6 8.3128 -7.1591 -0.1664 15 6 7.5393 -8.1541 -1.0427 16 7 6.5560 -7.0896 -1.2930 17 6 5.6743 -6.7771 -2.2931 18 1 5.0462 -5.9029 -2.2056 19 6 5.5884 -7.5834 -3.4198 20 7 6.3542 -8.6486 -3.5266 21 14 4.3862 -7.1567 -4.7843 22 1 4.7110 -5.8137 -5.3282 23 1 4.4875 -8.1677 -5.8673 24 1 3.0038 -7.1499 -4.2418 25 6 2.8618 -3.3219 -0.0025 26 8 1.8105 -2.4941 0.0012 27 6 2.2020 -1.2030 0.0005 28 1 -0.3632 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6517 2.1263 -0.0004 32 1 4.1110 2.1516 0.0009 33 1 5.3699 0.0378 0.0024 34 1 4.8493 -5.0703 0.0050 35 1 7.4938 -4.6319 0.8944 36 1 7.4936 -4.6330 -0.8856 37 1 9.0288 -6.5451 -0.7128 38 1 8.7227 -7.5884 0.7477 39 1 7.1329 -8.9983 -0.4856 40 1 8.0840 -8.4607 -1.9356 41 1 6.2940 -9.2122 -4.3138 42 1 2.8025 -4.4002 -0.0072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038340468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:02 Heat of formation + Delta-G solvation = 26.526724 kcal Electronic energy + Delta-G solvation = -25460.541039 eV Core-core repulsion = 21793.968651 eV Total energy + Delta-G solvation = -3666.572389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.67755 -40.72695 -39.63810 -39.10262 -35.58840 -34.64658 -34.23500 -32.59389 -30.86155 -29.94260 -28.99079 -27.81895 -25.39004 -25.05084 -23.71904 -23.39872 -22.73493 -21.28391 -20.68749 -19.12526 -18.41370 -18.20729 -17.46039 -17.09996 -17.06196 -16.92802 -16.39990 -16.10166 -15.69679 -15.36059 -15.30980 -14.83786 -14.61819 -14.35307 -14.28280 -13.79610 -13.63529 -13.34533 -13.24157 -12.94778 -12.89179 -12.71067 -12.60970 -12.59212 -12.35056 -12.00586 -11.86260 -11.64560 -11.34493 -11.09144 -10.92313 -10.81516 -10.09245 -9.69102 -9.18214 -8.88855 -7.87349 -5.18798 -0.30426 0.25558 0.65471 1.43159 1.46165 1.50995 1.57322 2.07889 2.19718 2.46788 2.68778 3.34271 3.36003 3.39602 3.50127 3.69292 3.91599 3.95416 4.07343 4.21593 4.29606 4.30845 4.34772 4.43160 4.55675 4.63621 4.69806 4.78551 4.81037 4.88885 4.96797 5.06729 5.09695 5.25972 5.27113 5.33080 5.37789 5.39815 5.46415 5.55697 5.59519 5.74969 5.97617 6.00534 6.49625 6.93802 7.14310 7.64651 8.64334 9.30165 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003658 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.529858 B = 7651.921673 C = 8824.644477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.262 4.262 8 C 0.584 3.416 9 O -0.582 6.582 10 N -0.704 5.704 11 C 0.132 3.868 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.136 4.136 15 C 0.143 3.857 16 N -0.629 5.629 17 C -0.208 4.208 18 H 0.088 0.912 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.964 3.036 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.270 1.270 25 C 0.093 3.907 26 O -0.181 6.181 27 C 0.022 3.978 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.245 0.755 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 16.097 11.460 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.112 4.112 4 C -0.136 4.136 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.267 4.267 8 C 0.373 3.627 9 O -0.465 6.465 10 N -0.353 5.353 11 C 0.007 3.993 12 C 0.028 3.972 13 H 0.091 0.909 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.355 5.355 17 C -0.336 4.336 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.196 1.196 25 C 0.024 3.976 26 O -0.080 6.080 27 C -0.024 4.024 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.192 0.808 32 H 0.177 0.823 33 H 0.136 0.864 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.047 16.515 11.147 22.314 hybrid contribution -0.265 -0.856 -1.192 1.491 sum -10.312 15.659 9.955 21.228 Atomic orbital electron populations 1.20811 0.88092 1.04071 1.03670 1.19302 0.97873 0.87704 1.02580 1.21305 0.93827 0.97431 0.98643 1.21456 0.94714 0.97909 0.99571 1.20765 1.00371 0.90961 0.99609 1.19708 0.93448 0.93061 1.05355 1.21020 0.93815 0.93700 1.18155 1.17363 0.87344 0.82295 0.75720 1.90713 1.44727 1.58188 1.52831 1.45726 1.10183 1.05713 1.73727 1.21652 0.82398 0.94270 1.00975 1.22575 0.94867 0.90707 0.89017 0.90873 1.23485 0.95162 0.98356 1.00413 1.22042 0.89074 0.91373 0.95773 1.45989 1.45333 1.27949 1.16225 1.19159 1.12794 1.06792 0.94884 0.89461 1.25487 1.02027 0.97875 1.00687 1.69996 1.43249 1.17564 1.29427 0.85370 0.79566 0.76466 0.79300 1.21472 1.22423 1.19594 1.25112 0.82466 0.97135 0.92900 1.83842 1.34655 1.14758 1.74737 1.19768 0.92116 0.84143 1.06359 0.89709 0.88631 0.91976 0.80761 0.82310 0.86426 0.75620 0.90115 0.93986 0.90437 0.88116 0.95757 0.94681 0.94584 0.73340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.02 71.24 0.71 -0.75 16 2 C -0.07 -1.48 5.89 -19.78 -0.12 -1.59 16 3 C -0.09 -1.55 9.66 22.28 0.22 -1.34 16 4 C -0.12 -2.35 10.04 22.28 0.22 -2.13 16 5 C -0.10 -2.80 9.88 22.38 0.22 -2.58 16 6 C -0.11 -3.53 6.29 -20.10 -0.13 -3.66 16 7 C -0.26 -8.24 6.31 -18.98 -0.12 -8.36 16 8 C 0.58 21.07 7.80 86.56 0.68 21.75 16 9 O -0.58 -24.92 16.29 -4.21 -0.07 -24.99 16 10 N -0.70 -23.23 5.33 -466.69 -2.49 -25.71 16 11 C 0.13 4.58 5.52 86.38 0.48 5.05 16 12 C 0.13 4.78 4.10 41.79 0.17 4.95 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.14 -4.56 8.03 30.93 0.25 -4.31 16 15 C 0.14 6.41 7.40 83.18 0.62 7.03 16 16 N -0.63 -29.66 3.65 -713.89 -2.61 -32.27 16 17 C -0.21 -10.89 10.55 84.03 0.89 -10.00 16 18 H 0.09 4.29 7.50 -2.91 -0.02 4.27 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 20 N -0.95 -56.77 11.51 21.65 0.25 -56.52 16 21 Si 0.96 45.25 29.55 68.60 2.03 47.28 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.09 2.26 11.52 67.31 0.78 3.04 16 26 O -0.18 -4.59 10.53 -3.89 -0.04 -4.63 16 27 C 0.02 0.59 7.05 22.93 0.16 0.75 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.12 3.67 7.54 -2.91 -0.02 3.65 16 34 H 0.41 11.92 7.28 -92.71 -0.68 11.25 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.08 2.67 8.12 -2.38 -0.02 2.65 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 42 H 0.25 4.09 7.41 -2.91 -0.02 4.07 16 Total: -1.00 -75.14 358.15 2.94 -72.21 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.37 Total: 20.09 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.49 Total: 4.54 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.84 Total: -114.50 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.11 Total: -29.62 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -75.14 2.94 -72.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038340468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.735 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds