Wall clock time and date at job start Tue Mar 31 2020 10:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36657 * 120.14332 * 2 1 4 4 C 1.38793 * 120.44119 * 180.02562 * 3 2 1 5 5 C 1.37837 * 120.74417 * 0.02562 * 4 3 2 6 6 C 1.38987 * 119.85780 * 359.97438 * 5 4 3 7 7 O 1.34712 * 133.25405 * 180.02562 * 6 5 4 8 8 C 1.34951 * 110.86464 * 179.97438 * 7 6 5 9 9 C 1.46977 * 125.12712 * 179.97438 * 8 7 6 10 10 O 1.21655 * 120.00281 * 179.75282 * 9 8 7 11 11 N 1.34784 * 120.00037 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72755 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.73537 * 303.75202 * 13 12 11 15 15 C 1.53497 * 113.46535 * 172.93886 * 13 12 11 16 16 C 1.53489 * 83.34435 * 219.14787 * 15 13 12 17 17 N 1.47064 * 113.47190 * 74.50127 * 13 12 11 18 18 C 1.36932 * 136.05740 * 321.86413 * 17 13 12 19 19 H 1.08001 * 120.00350 * 0.02562 * 18 17 13 20 20 C 1.38818 * 119.99907 * 179.97438 * 18 17 13 21 21 N 1.31616 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46969 * 90.00613 * 22 20 18 24 24 H 1.48501 * 109.47290 * 210.00578 * 22 20 18 25 25 H 1.48500 * 109.47255 * 330.00676 * 22 20 18 26 26 C 1.35797 * 109.74428 * 0.24742 * 8 7 6 27 27 C 1.39663 * 120.14479 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47555 * 90.00206 * 1 2 3 29 29 H 1.08999 * 109.47502 * 210.00149 * 1 2 3 30 30 H 1.09006 * 109.47170 * 329.99964 * 1 2 3 31 31 H 1.07994 * 119.77966 * 0.04265 * 3 2 1 32 32 H 1.08002 * 119.62821 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.07157 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99846 * 359.72544 * 11 9 8 35 35 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 36 36 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 37 37 H 1.09003 * 114.20815 * 332.73781 * 15 13 12 38 38 H 1.09005 * 114.20781 * 105.56354 * 15 13 12 39 39 H 1.09003 * 113.46911 * 271.28952 * 16 15 13 40 40 H 1.08997 * 113.47149 * 140.84621 * 16 15 13 41 41 H 0.96996 * 119.99746 * 179.97438 * 21 20 18 42 42 H 1.08002 * 126.96084 * 179.73908 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1818 0.0000 4 6 3.5811 1.1890 -0.0005 5 6 4.2919 0.0080 -0.0016 6 6 3.6160 -1.2064 -0.0016 7 8 4.0243 -2.4901 -0.0021 8 6 2.9683 -3.3304 -0.0013 9 6 3.0551 -4.7976 -0.0020 10 8 2.0393 -5.4671 0.0033 11 7 4.2601 -5.4015 -0.0031 12 6 4.3465 -6.8639 0.0022 13 6 5.8166 -7.2879 0.0004 14 1 6.3742 -6.8710 -0.8384 15 6 6.0172 -8.7992 0.1787 16 6 7.2003 -8.3585 1.0516 17 7 6.4823 -7.0989 1.2981 18 6 6.4489 -6.1621 2.2962 19 1 5.8017 -5.3020 2.2081 20 6 7.2463 -6.3183 3.4217 21 7 8.0347 -7.3667 3.5293 22 14 7.2002 -5.0407 4.7837 23 1 6.1588 -5.4115 5.7752 24 1 8.5240 -4.9837 5.4540 25 1 6.8810 -3.7110 4.2045 26 6 1.8135 -2.6159 -0.0058 27 6 2.2083 -1.2077 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6520 2.1163 0.0007 32 1 4.1102 2.1306 -0.0009 33 1 5.3717 0.0263 -0.0016 34 1 5.0700 -4.8677 -0.0074 35 1 3.8575 -7.2536 0.8951 36 1 3.8525 -7.2603 -0.8848 37 1 5.2165 -9.2946 0.7280 38 1 6.3050 -9.3225 -0.7331 39 1 8.1270 -8.2277 0.4927 40 1 7.3296 -8.9668 1.9468 41 1 8.5921 -7.4757 4.3156 42 1 0.8072 -3.0082 -0.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039062828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:21 Heat of formation + Delta-G solvation = 48.287329 kcal Electronic energy + Delta-G solvation = -25389.022466 eV Core-core repulsion = 21723.393688 eV Total energy + Delta-G solvation = -3665.628778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57510 -39.45300 -38.32942 -38.02402 -34.28251 -33.50361 -32.24328 -31.70923 -30.16302 -28.16149 -27.78874 -26.91826 -23.95312 -23.49381 -22.81529 -21.85452 -20.84293 -20.47234 -19.33932 -18.24487 -17.29220 -16.66640 -16.44039 -16.22328 -15.62751 -15.28018 -15.07135 -14.51141 -14.25114 -13.97197 -13.83226 -13.77813 -13.36447 -13.22511 -13.17594 -12.95449 -12.54239 -12.01050 -11.90596 -11.86457 -11.56601 -11.16399 -11.14603 -11.01974 -10.80020 -10.60836 -10.26945 -10.23183 -9.89763 -9.85967 -9.30973 -8.85455 -8.83583 -8.70678 -8.24861 -6.92859 -5.79207 -3.12033 0.46980 1.16788 1.78238 2.43808 3.24934 3.35403 3.38241 3.43382 3.44028 3.47448 4.31289 4.40929 4.48146 4.61093 4.89865 4.92235 5.06079 5.11762 5.16880 5.28163 5.35752 5.36495 5.46346 5.51821 5.53773 5.66141 5.77318 5.87048 5.96390 6.02477 6.07862 6.18599 6.25992 6.29167 6.35628 6.40382 6.55362 6.61933 6.74030 6.94002 7.20079 7.35800 7.55620 7.70525 7.95212 8.25310 9.00761 9.67965 10.59674 11.37861 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.003745 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.637230 B = 7474.150519 C = 8743.761132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.115 4.115 6 C 0.074 3.926 7 O -0.180 6.180 8 C -0.013 4.013 9 C 0.592 3.408 10 O -0.526 6.526 11 N -0.696 5.696 12 C 0.119 3.881 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.907 3.093 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C -0.122 4.122 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 13.438 -10.107 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.101 4.101 5 C -0.133 4.133 6 C 0.025 3.975 7 O -0.081 6.081 8 C -0.063 4.063 9 C 0.377 3.623 10 O -0.405 6.405 11 N -0.344 5.344 12 C -0.005 4.005 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.199 4.199 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.737 3.263 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.143 4.143 27 C -0.143 4.143 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.032 12.979 -9.760 19.632 hybrid contribution 0.551 1.074 0.817 1.457 sum -10.481 14.052 -8.942 19.680 Atomic orbital electron populations 1.20820 0.90626 1.03214 1.02696 1.19142 0.96129 0.90693 0.96947 1.20655 0.94180 0.97405 1.04027 1.20948 0.94002 0.97034 0.98090 1.20017 1.00538 0.87598 1.05165 1.19756 0.92715 0.83949 1.01075 1.84084 1.34134 1.14090 1.75773 1.22179 0.85576 0.90986 1.07553 1.16684 0.84671 0.83078 0.77889 1.90851 1.35192 1.62793 1.51691 1.45948 1.07653 1.09158 1.71663 1.21971 0.98960 0.77780 1.01811 1.22440 0.90511 0.94287 0.90951 0.93305 1.23663 1.01488 0.94737 0.99992 1.22032 0.91596 0.87447 0.96352 1.45694 1.47084 1.25270 1.14664 1.18851 1.20216 1.00702 0.94545 0.90244 1.24756 0.98878 0.98211 0.98329 1.69823 1.28857 1.28628 1.29117 0.86198 0.77005 0.80815 0.82254 1.21497 1.21572 1.20673 1.22627 0.99028 0.90053 1.02560 1.19759 0.93018 0.93514 1.08016 0.90695 0.91111 0.91126 0.85286 0.84625 0.84664 0.75414 0.90529 0.91673 0.90109 0.92236 0.95697 0.90912 0.93655 0.81418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.95 36.00 0.36 -0.57 16 2 C -0.03 -0.31 5.88 -104.66 -0.62 -0.93 16 3 C -0.14 -1.33 9.63 -39.95 -0.38 -1.71 16 4 C -0.08 -0.76 10.01 -39.52 -0.40 -1.16 16 5 C -0.11 -1.33 10.07 -39.45 -0.40 -1.73 16 6 C 0.07 1.06 7.41 -38.35 -0.28 0.78 16 7 O -0.18 -2.91 10.28 2.77 0.03 -2.88 16 8 C -0.01 -0.21 7.07 -36.92 -0.26 -0.47 16 9 C 0.59 10.61 7.80 -12.72 -0.10 10.51 16 10 O -0.53 -10.41 16.83 5.23 0.09 -10.32 16 11 N -0.70 -12.38 5.33 -61.53 -0.33 -12.71 16 12 C 0.12 2.13 5.52 -4.04 -0.02 2.11 16 13 C 0.13 2.41 4.10 -72.40 -0.30 2.11 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.16 -2.86 8.03 -26.22 -0.21 -3.07 16 16 C 0.15 3.44 7.39 -8.52 -0.06 3.38 16 17 N -0.60 -14.65 3.65 -177.02 -0.65 -15.29 16 18 C -0.22 -5.85 10.55 -15.06 -0.16 -6.00 16 19 H 0.08 2.10 7.50 -52.49 -0.39 1.70 16 20 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -26.97 11.51 55.49 0.64 -26.33 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.12 -1.75 10.52 -37.24 -0.39 -2.14 16 27 C -0.14 -1.92 6.15 -105.19 -0.65 -2.56 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.41 7.28 8.09 -40.82 -0.33 6.95 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -32.27 360.26 -9.49 -41.76 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.71 Total: 4.76 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.96 Total: -1.70 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.34 Total: -54.34 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.12 Total: -13.21 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.27 -9.49 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039062828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.043 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds