Wall clock time and date at job start Tue Mar 31 2020 10:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46249 * 126.95888 * 2 1 4 4 C 1.39707 * 134.19227 * 0.02784 * 3 2 1 5 5 C 1.36624 * 119.70891 * 179.97438 * 4 3 2 6 6 C 1.38839 * 120.44406 * 0.02562 * 5 4 3 7 7 C 1.37793 * 120.74204 * 359.97438 * 6 5 4 8 8 C 1.39026 * 119.85742 * 359.97438 * 7 6 5 9 9 O 1.34711 * 133.23969 * 180.33664 * 8 7 6 10 10 C 1.34943 * 110.86360 * 180.15440 * 9 8 7 11 11 C 1.46985 * 125.13116 * 179.81410 * 10 9 8 12 12 O 1.21654 * 119.99731 * 185.69558 * 11 10 9 13 13 N 1.34774 * 119.99962 * 5.68994 * 11 10 9 14 14 C 1.46494 * 120.00219 * 5.42682 * 13 11 10 15 15 C 1.46499 * 119.99747 * 185.42072 * 13 11 10 16 16 C 1.53489 * 114.20836 * 240.00367 * 15 13 11 17 17 N 1.47068 * 87.98685 * 220.14947 * 16 15 13 18 18 C 1.36935 * 136.05780 * 207.08304 * 17 16 15 19 19 H 1.08003 * 120.00085 * 354.73974 * 18 17 16 20 20 C 1.38815 * 120.00001 * 174.73379 * 18 17 16 21 21 N 1.31622 * 120.00031 * 183.93389 * 20 18 17 22 22 Si 1.86797 * 119.99783 * 3.94237 * 20 18 17 23 23 H 1.48501 * 109.47361 * 174.31363 * 22 20 18 24 24 H 1.48502 * 109.46703 * 294.30723 * 22 20 18 25 25 H 1.48497 * 109.47335 * 54.30894 * 22 20 18 26 26 C 1.47065 * 87.88257 * 27.34366 * 17 16 15 27 27 H 1.08996 * 109.46695 * 269.99351 * 1 2 3 28 28 H 1.08998 * 109.47292 * 29.99601 * 1 2 3 29 29 H 1.09003 * 109.46779 * 149.99618 * 1 2 3 30 30 H 1.07997 * 120.14579 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.77520 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.62683 * 179.97438 * 6 5 4 33 33 H 1.08004 * 120.06755 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47240 * 275.71933 * 14 13 11 35 35 H 1.09007 * 109.47185 * 35.71720 * 14 13 11 36 36 H 1.09005 * 109.47282 * 155.71582 * 14 13 11 37 37 H 1.08999 * 113.28028 * 13.07182 * 15 13 11 38 38 H 1.09003 * 113.47192 * 105.36759 * 16 15 13 39 39 H 1.08998 * 113.47143 * 334.92918 * 16 15 13 40 40 H 0.97000 * 119.99767 * 5.01332 * 21 20 18 41 41 H 1.08999 * 113.46878 * 87.43779 * 26 17 16 42 42 H 1.09007 * 113.46307 * 217.87781 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1714 2.5491 0.0005 5 6 3.2398 3.4006 0.0009 6 6 4.5360 2.9031 0.0002 7 6 4.7692 1.5451 -0.0003 8 6 3.6980 0.6589 0.0004 9 8 3.6125 -0.6855 0.0060 10 6 2.3236 -1.0851 0.0005 11 6 1.8717 -2.4838 0.0003 12 8 0.6876 -2.7404 -0.1094 13 7 2.7692 -3.4819 0.1216 14 6 4.1790 -3.1729 0.3726 15 6 2.3348 -4.8760 0.0025 16 6 2.6020 -5.7273 1.2514 17 7 2.9911 -6.8266 0.3553 18 6 2.9977 -8.1945 0.4180 19 1 2.7292 -8.6943 1.3370 20 6 3.3494 -8.9388 -0.6997 21 7 3.2812 -10.2528 -0.6635 22 14 3.9195 -8.0756 -2.2551 23 1 4.3638 -9.0867 -3.2479 24 1 2.7975 -7.2851 -2.8220 25 1 5.0503 -7.1690 -1.9320 26 6 3.3764 -5.8101 -0.6352 27 1 -0.3632 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.1652 2.9413 0.0014 31 1 3.0749 4.4680 0.0016 32 1 5.3708 3.5883 0.0001 33 1 5.7820 1.1700 -0.0004 34 1 4.6791 -2.9638 -0.5730 35 1 4.2497 -2.3001 1.0219 36 1 4.6573 -4.0249 0.8560 37 1 1.3283 -4.9804 -0.4027 38 1 1.7046 -5.9384 1.8330 39 1 3.4234 -5.3546 1.8633 40 1 2.9169 -10.6982 0.1174 41 1 4.4019 -5.4591 -0.5207 42 1 3.1386 -6.0917 -1.6611 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044262576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:16 Heat of formation + Delta-G solvation = 51.546871 kcal Electronic energy + Delta-G solvation = -25776.797683 eV Core-core repulsion = 22111.310249 eV Total energy + Delta-G solvation = -3665.487434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.62078 -41.42921 -39.71229 -38.77361 -36.30791 -34.90225 -34.44837 -31.51908 -31.08611 -29.97802 -28.76735 -27.96480 -27.13626 -25.74679 -24.04520 -23.59216 -21.94217 -21.08990 -20.55403 -19.65674 -19.06971 -18.01182 -17.89224 -17.70087 -17.40267 -16.84279 -16.42093 -15.96062 -15.65941 -15.27244 -15.13440 -14.90713 -14.63639 -14.33157 -14.02334 -13.88720 -13.77629 -13.65082 -13.35201 -13.31637 -13.27690 -13.20406 -13.03646 -12.66423 -12.40324 -12.27028 -11.89926 -11.43420 -11.27011 -11.15340 -11.09184 -10.93625 -9.84526 -9.65167 -9.28602 -9.17518 -8.68787 -5.54751 -0.50240 0.36512 0.75793 1.30700 1.35949 1.45557 1.65328 1.81424 1.92544 2.50066 2.73246 2.91575 3.13652 3.20897 3.44182 3.54186 3.69809 3.87647 3.99044 4.13102 4.13589 4.18803 4.31410 4.42602 4.44166 4.48328 4.50805 4.55634 4.63989 4.65984 4.70893 4.84347 4.89620 4.98163 5.01404 5.07642 5.20276 5.34651 5.36580 5.42562 5.50184 5.61392 5.88640 6.01602 6.17175 6.63286 6.78406 7.24573 8.16045 8.85070 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.003082 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.771156 B = 9082.454217 C = 9569.141650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.078 4.078 3 C -0.164 4.164 4 C -0.066 4.066 5 C -0.137 4.137 6 C -0.073 4.073 7 C -0.123 4.123 8 C 0.045 3.955 9 O -0.182 6.182 10 C -0.057 4.057 11 C 0.596 3.404 12 O -0.544 6.544 13 N -0.589 5.589 14 C 0.073 3.927 15 C 0.124 3.876 16 C 0.115 3.885 17 N -0.651 5.651 18 C -0.291 4.291 19 H 0.054 0.946 20 C -0.081 4.081 21 N -0.967 5.967 22 Si 1.108 2.892 23 H -0.301 1.301 24 H -0.274 1.274 25 H -0.258 1.258 26 C 0.083 3.917 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 34.675 1.252 34.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.165 4.165 4 C -0.084 4.084 5 C -0.154 4.154 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.003 4.003 9 O -0.085 6.085 10 C -0.106 4.106 11 C 0.385 3.615 12 O -0.424 6.424 13 N -0.319 5.319 14 C -0.068 4.068 15 C 0.019 3.981 16 C -0.012 4.012 17 N -0.380 5.380 18 C -0.418 4.418 19 H 0.072 0.928 20 C -0.273 4.273 21 N -0.611 5.611 22 Si 0.934 3.066 23 H -0.229 1.229 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.043 4.043 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.876 33.801 -0.265 33.924 hybrid contribution -0.745 -0.851 1.935 2.241 sum 2.132 32.949 1.670 33.060 Atomic orbital electron populations 1.20489 0.86746 1.04212 1.03562 1.21737 0.97720 0.89912 0.98781 1.20024 0.92048 0.95159 1.09293 1.20702 1.01541 0.89278 0.96895 1.21250 0.91767 1.01514 1.00900 1.21518 0.98756 0.93462 0.95322 1.20402 0.97002 0.91656 1.05112 1.20353 0.96649 0.81328 1.01933 1.84208 1.26132 1.21277 1.76873 1.21371 0.82096 0.93834 1.13281 1.17005 0.85256 0.82464 0.76807 1.90809 1.16545 1.82900 1.52127 1.47757 1.09941 1.05022 1.69218 1.22127 0.79139 1.02620 1.02914 1.23037 0.99204 0.77691 0.98138 1.22911 0.98510 0.85902 0.93877 1.45767 1.75316 0.99831 1.17069 1.19989 1.44178 0.79378 0.98290 0.92804 1.27050 1.00577 0.95725 1.03920 1.71018 1.49712 1.08262 1.32154 0.83283 0.77274 0.73347 0.72657 1.22944 1.20100 1.18286 1.23443 0.98041 0.87746 0.95021 0.89842 0.88912 0.90779 0.83482 0.81953 0.81161 0.83075 0.90823 0.89272 0.89572 0.86768 0.93356 0.91737 0.94318 0.90883 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.88 71.24 0.70 -1.25 16 2 C -0.08 -1.90 6.39 -18.34 -0.12 -2.02 16 3 C -0.16 -3.39 6.37 -20.23 -0.13 -3.52 16 4 C -0.07 -0.92 10.06 22.25 0.22 -0.69 16 5 C -0.14 -1.26 9.98 22.04 0.22 -1.04 16 6 C -0.07 -0.66 10.01 22.31 0.22 -0.44 16 7 C -0.12 -1.74 10.07 22.35 0.23 -1.51 16 8 C 0.05 0.95 7.41 23.07 0.17 1.12 16 9 O -0.18 -4.45 7.36 -12.90 -0.09 -4.54 16 10 C -0.06 -1.55 6.67 24.00 0.16 -1.39 16 11 C 0.60 18.96 7.64 86.54 0.66 19.62 16 12 O -0.54 -19.90 14.14 -4.20 -0.06 -19.96 16 13 N -0.59 -18.07 3.11 -825.80 -2.57 -20.64 16 14 C 0.07 1.76 8.09 127.77 1.03 2.79 16 15 C 0.12 4.54 4.55 45.55 0.21 4.75 16 16 C 0.11 4.53 8.23 83.17 0.68 5.21 16 17 N -0.65 -32.01 3.69 -738.07 -2.72 -34.74 16 18 C -0.29 -17.21 11.09 84.03 0.93 -16.28 16 19 H 0.05 3.43 8.05 -2.91 -0.02 3.40 16 20 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 21 N -0.97 -63.10 13.70 21.65 0.30 -62.81 16 22 Si 1.11 53.98 25.10 68.60 1.72 55.71 16 23 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 24 H -0.27 -12.47 6.34 99.48 0.63 -11.84 16 25 H -0.26 -11.11 6.68 99.48 0.66 -10.45 16 26 C 0.08 3.36 5.33 83.26 0.44 3.81 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.89 6.27 -2.39 -0.01 1.87 16 30 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.07 1.60 8.13 -2.39 -0.02 1.59 16 35 H 0.09 1.93 5.97 -2.38 -0.01 1.92 16 36 H 0.09 2.03 5.95 -2.38 -0.01 2.02 16 37 H 0.11 4.54 7.33 -2.39 -0.02 4.52 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.28 7.05 -2.39 -0.02 2.27 16 40 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 41 H 0.07 2.66 6.37 -2.39 -0.02 2.64 16 42 H 0.05 2.27 4.01 -2.38 -0.01 2.26 16 Total: -1.00 -75.97 339.00 3.57 -72.40 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.89 Total: 9.85 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.11 Total: 4.73 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -5.00 Total: -118.18 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.15 Total: -24.50 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.72 Total: 55.71 kcal Total: -75.97 3.57 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044262576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.946 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds