Wall clock time and date at job start Tue Mar 31 2020 10:19:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.46249 * 126.95888 * 2 1
4 4 C 1.39707 * 134.19227 * 0.02784 * 3 2 1
5 5 C 1.36624 * 119.70891 * 179.97438 * 4 3 2
6 6 C 1.38839 * 120.44406 * 0.02562 * 5 4 3
7 7 C 1.37793 * 120.74204 * 359.97438 * 6 5 4
8 8 C 1.39026 * 119.85742 * 359.97438 * 7 6 5
9 9 O 1.34711 * 133.23969 * 180.33664 * 8 7 6
10 10 C 1.34943 * 110.86360 * 180.15440 * 9 8 7
11 11 C 1.46985 * 125.13116 * 179.81410 * 10 9 8
12 12 O 1.21654 * 119.99731 * 185.69558 * 11 10 9
13 13 N 1.34774 * 119.99962 * 5.68994 * 11 10 9
14 14 C 1.46494 * 120.00219 * 5.42682 * 13 11 10
15 15 C 1.46499 * 119.99747 * 185.42072 * 13 11 10
16 16 C 1.53489 * 114.20836 * 240.00367 * 15 13 11
17 17 N 1.47068 * 87.98685 * 220.14947 * 16 15 13
18 18 C 1.36935 * 136.05780 * 207.08304 * 17 16 15
19 19 H 1.08003 * 120.00085 * 354.73974 * 18 17 16
20 20 C 1.38815 * 120.00001 * 174.73379 * 18 17 16
21 21 N 1.31622 * 120.00031 * 183.93389 * 20 18 17
22 22 Si 1.86797 * 119.99783 * 3.94237 * 20 18 17
23 23 H 1.48501 * 109.47361 * 174.31363 * 22 20 18
24 24 H 1.48502 * 109.46703 * 294.30723 * 22 20 18
25 25 H 1.48497 * 109.47335 * 54.30894 * 22 20 18
26 26 C 1.47065 * 87.88257 * 27.34366 * 17 16 15
27 27 H 1.08996 * 109.46695 * 269.99351 * 1 2 3
28 28 H 1.08998 * 109.47292 * 29.99601 * 1 2 3
29 29 H 1.09003 * 109.46779 * 149.99618 * 1 2 3
30 30 H 1.07997 * 120.14579 * 0.02562 * 4 3 2
31 31 H 1.07999 * 119.77520 * 180.02562 * 5 4 3
32 32 H 1.08000 * 119.62683 * 179.97438 * 6 5 4
33 33 H 1.08004 * 120.06755 * 180.02562 * 7 6 5
34 34 H 1.08994 * 109.47240 * 275.71933 * 14 13 11
35 35 H 1.09007 * 109.47185 * 35.71720 * 14 13 11
36 36 H 1.09005 * 109.47282 * 155.71582 * 14 13 11
37 37 H 1.08999 * 113.28028 * 13.07182 * 15 13 11
38 38 H 1.09003 * 113.47192 * 105.36759 * 16 15 13
39 39 H 1.08998 * 113.47143 * 334.92918 * 16 15 13
40 40 H 0.97000 * 119.99767 * 5.01332 * 21 20 18
41 41 H 1.08999 * 113.46878 * 87.43779 * 26 17 16
42 42 H 1.09007 * 113.46307 * 217.87781 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3863 1.1686 0.0000
4 6 2.1714 2.5491 0.0005
5 6 3.2398 3.4006 0.0009
6 6 4.5360 2.9031 0.0002
7 6 4.7692 1.5451 -0.0003
8 6 3.6980 0.6589 0.0004
9 8 3.6125 -0.6855 0.0060
10 6 2.3236 -1.0851 0.0005
11 6 1.8717 -2.4838 0.0003
12 8 0.6876 -2.7404 -0.1094
13 7 2.7692 -3.4819 0.1216
14 6 4.1790 -3.1729 0.3726
15 6 2.3348 -4.8760 0.0025
16 6 2.6020 -5.7273 1.2514
17 7 2.9911 -6.8266 0.3553
18 6 2.9977 -8.1945 0.4180
19 1 2.7292 -8.6943 1.3370
20 6 3.3494 -8.9388 -0.6997
21 7 3.2812 -10.2528 -0.6635
22 14 3.9195 -8.0756 -2.2551
23 1 4.3638 -9.0867 -3.2479
24 1 2.7975 -7.2851 -2.8220
25 1 5.0503 -7.1690 -1.9320
26 6 3.3764 -5.8101 -0.6352
27 1 -0.3632 -0.0001 1.0276
28 1 -0.3634 0.8900 -0.5138
29 1 -0.3633 -0.8900 -0.5139
30 1 1.1652 2.9413 0.0014
31 1 3.0749 4.4680 0.0016
32 1 5.3708 3.5883 0.0001
33 1 5.7820 1.1700 -0.0004
34 1 4.6791 -2.9638 -0.5730
35 1 4.2497 -2.3001 1.0219
36 1 4.6573 -4.0249 0.8560
37 1 1.3283 -4.9804 -0.4027
38 1 1.7046 -5.9384 1.8330
39 1 3.4234 -5.3546 1.8633
40 1 2.9169 -10.6982 0.1174
41 1 4.4019 -5.4591 -0.5207
42 1 3.1386 -6.0917 -1.6611
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001044262576.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:19:16
Heat of formation + Delta-G solvation = 51.546871 kcal
Electronic energy + Delta-G solvation = -25776.797683 eV
Core-core repulsion = 22111.310249 eV
Total energy + Delta-G solvation = -3665.487434 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.73 seconds
Orbital eigenvalues (eV)
-43.62078 -41.42921 -39.71229 -38.77361 -36.30791 -34.90225 -34.44837 -31.51908
-31.08611 -29.97802 -28.76735 -27.96480 -27.13626 -25.74679 -24.04520 -23.59216
-21.94217 -21.08990 -20.55403 -19.65674 -19.06971 -18.01182 -17.89224 -17.70087
-17.40267 -16.84279 -16.42093 -15.96062 -15.65941 -15.27244 -15.13440 -14.90713
-14.63639 -14.33157 -14.02334 -13.88720 -13.77629 -13.65082 -13.35201 -13.31637
-13.27690 -13.20406 -13.03646 -12.66423 -12.40324 -12.27028 -11.89926 -11.43420
-11.27011 -11.15340 -11.09184 -10.93625 -9.84526 -9.65167 -9.28602 -9.17518
-8.68787 -5.54751 -0.50240 0.36512 0.75793 1.30700 1.35949 1.45557
1.65328 1.81424 1.92544 2.50066 2.73246 2.91575 3.13652 3.20897
3.44182 3.54186 3.69809 3.87647 3.99044 4.13102 4.13589 4.18803
4.31410 4.42602 4.44166 4.48328 4.50805 4.55634 4.63989 4.65984
4.70893 4.84347 4.89620 4.98163 5.01404 5.07642 5.20276 5.34651
5.36580 5.42562 5.50184 5.61392 5.88640 6.01602 6.17175 6.63286
6.78406 7.24573 8.16045 8.85070
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.027079 B = 0.003082 C = 0.002925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1033.771156 B = 9082.454217 C = 9569.141650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C -0.078 4.078
3 C -0.164 4.164
4 C -0.066 4.066
5 C -0.137 4.137
6 C -0.073 4.073
7 C -0.123 4.123
8 C 0.045 3.955
9 O -0.182 6.182
10 C -0.057 4.057
11 C 0.596 3.404
12 O -0.544 6.544
13 N -0.589 5.589
14 C 0.073 3.927
15 C 0.124 3.876
16 C 0.115 3.885
17 N -0.651 5.651
18 C -0.291 4.291
19 H 0.054 0.946
20 C -0.081 4.081
21 N -0.967 5.967
22 Si 1.108 2.892
23 H -0.301 1.301
24 H -0.274 1.274
25 H -0.258 1.258
26 C 0.083 3.917
27 H 0.083 0.917
28 H 0.092 0.908
29 H 0.073 0.927
30 H 0.147 0.853
31 H 0.163 0.837
32 H 0.171 0.829
33 H 0.152 0.848
34 H 0.073 0.927
35 H 0.089 0.911
36 H 0.086 0.914
37 H 0.114 0.886
38 H 0.048 0.952
39 H 0.065 0.935
40 H 0.248 0.752
41 H 0.074 0.926
42 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.660 34.675 1.252 34.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.082 4.082
3 C -0.165 4.165
4 C -0.084 4.084
5 C -0.154 4.154
6 C -0.091 4.091
7 C -0.142 4.142
8 C -0.003 4.003
9 O -0.085 6.085
10 C -0.106 4.106
11 C 0.385 3.615
12 O -0.424 6.424
13 N -0.319 5.319
14 C -0.068 4.068
15 C 0.019 3.981
16 C -0.012 4.012
17 N -0.380 5.380
18 C -0.418 4.418
19 H 0.072 0.928
20 C -0.273 4.273
21 N -0.611 5.611
22 Si 0.934 3.066
23 H -0.229 1.229
24 H -0.201 1.201
25 H -0.183 1.183
26 C -0.043 4.043
27 H 0.102 0.898
28 H 0.111 0.889
29 H 0.092 0.908
30 H 0.165 0.835
31 H 0.180 0.820
32 H 0.188 0.812
33 H 0.169 0.831
34 H 0.092 0.908
35 H 0.107 0.893
36 H 0.104 0.896
37 H 0.132 0.868
38 H 0.066 0.934
39 H 0.083 0.917
40 H 0.057 0.943
41 H 0.091 0.909
42 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.876 33.801 -0.265 33.924
hybrid contribution -0.745 -0.851 1.935 2.241
sum 2.132 32.949 1.670 33.060
Atomic orbital electron populations
1.20489 0.86746 1.04212 1.03562 1.21737 0.97720 0.89912 0.98781
1.20024 0.92048 0.95159 1.09293 1.20702 1.01541 0.89278 0.96895
1.21250 0.91767 1.01514 1.00900 1.21518 0.98756 0.93462 0.95322
1.20402 0.97002 0.91656 1.05112 1.20353 0.96649 0.81328 1.01933
1.84208 1.26132 1.21277 1.76873 1.21371 0.82096 0.93834 1.13281
1.17005 0.85256 0.82464 0.76807 1.90809 1.16545 1.82900 1.52127
1.47757 1.09941 1.05022 1.69218 1.22127 0.79139 1.02620 1.02914
1.23037 0.99204 0.77691 0.98138 1.22911 0.98510 0.85902 0.93877
1.45767 1.75316 0.99831 1.17069 1.19989 1.44178 0.79378 0.98290
0.92804 1.27050 1.00577 0.95725 1.03920 1.71018 1.49712 1.08262
1.32154 0.83283 0.77274 0.73347 0.72657 1.22944 1.20100 1.18286
1.23443 0.98041 0.87746 0.95021 0.89842 0.88912 0.90779 0.83482
0.81953 0.81161 0.83075 0.90823 0.89272 0.89572 0.86768 0.93356
0.91737 0.94318 0.90883 0.92869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.95 9.88 71.24 0.70 -1.25 16
2 C -0.08 -1.90 6.39 -18.34 -0.12 -2.02 16
3 C -0.16 -3.39 6.37 -20.23 -0.13 -3.52 16
4 C -0.07 -0.92 10.06 22.25 0.22 -0.69 16
5 C -0.14 -1.26 9.98 22.04 0.22 -1.04 16
6 C -0.07 -0.66 10.01 22.31 0.22 -0.44 16
7 C -0.12 -1.74 10.07 22.35 0.23 -1.51 16
8 C 0.05 0.95 7.41 23.07 0.17 1.12 16
9 O -0.18 -4.45 7.36 -12.90 -0.09 -4.54 16
10 C -0.06 -1.55 6.67 24.00 0.16 -1.39 16
11 C 0.60 18.96 7.64 86.54 0.66 19.62 16
12 O -0.54 -19.90 14.14 -4.20 -0.06 -19.96 16
13 N -0.59 -18.07 3.11 -825.80 -2.57 -20.64 16
14 C 0.07 1.76 8.09 127.77 1.03 2.79 16
15 C 0.12 4.54 4.55 45.55 0.21 4.75 16
16 C 0.11 4.53 8.23 83.17 0.68 5.21 16
17 N -0.65 -32.01 3.69 -738.07 -2.72 -34.74 16
18 C -0.29 -17.21 11.09 84.03 0.93 -16.28 16
19 H 0.05 3.43 8.05 -2.91 -0.02 3.40 16
20 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16
21 N -0.97 -63.10 13.70 21.65 0.30 -62.81 16
22 Si 1.11 53.98 25.10 68.60 1.72 55.71 16
23 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16
24 H -0.27 -12.47 6.34 99.48 0.63 -11.84 16
25 H -0.26 -11.11 6.68 99.48 0.66 -10.45 16
26 C 0.08 3.36 5.33 83.26 0.44 3.81 16
27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
28 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16
29 H 0.07 1.89 6.27 -2.39 -0.01 1.87 16
30 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16
31 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16
32 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16
33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16
34 H 0.07 1.60 8.13 -2.39 -0.02 1.59 16
35 H 0.09 1.93 5.97 -2.38 -0.01 1.92 16
36 H 0.09 2.03 5.95 -2.38 -0.01 2.02 16
37 H 0.11 4.54 7.33 -2.39 -0.02 4.52 16
38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
39 H 0.07 2.28 7.05 -2.39 -0.02 2.27 16
40 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16
41 H 0.07 2.66 6.37 -2.39 -0.02 2.64 16
42 H 0.05 2.27 4.01 -2.38 -0.01 2.26 16
Total: -1.00 -75.97 339.00 3.57 -72.40
By element:
Atomic # 1 Polarization: 8.95 SS G_CDS: 0.89 Total: 9.85 kcal
Atomic # 6 Polarization: -1.38 SS G_CDS: 6.11 Total: 4.73 kcal
Atomic # 7 Polarization: -113.18 SS G_CDS: -5.00 Total: -118.18 kcal
Atomic # 8 Polarization: -24.34 SS G_CDS: -0.15 Total: -24.50 kcal
Atomic # 14 Polarization: 53.98 SS G_CDS: 1.72 Total: 55.71 kcal
Total: -75.97 3.57 -72.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044262576.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.946 kcal
(2) G-P(sol) polarization free energy of solvation -75.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.73 seconds