Wall clock time and date at job start Tue Mar 31 2020 11:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 110.63787 * 2 1 4 4 C 1.34775 * 120.00303 * 56.86498 * 3 2 1 5 5 O 1.21578 * 119.99375 * 359.97438 * 4 3 2 6 6 C 1.47694 * 120.00060 * 179.97438 * 4 3 2 7 7 C 1.40101 * 120.02802 * 0.28727 * 6 4 3 8 8 C 1.36428 * 120.68772 * 180.26281 * 7 6 4 9 9 C 1.39165 * 120.27159 * 359.44098 * 8 7 6 10 10 O 1.34749 * 133.24687 * 180.27424 * 9 8 7 11 11 C 1.34443 * 110.95325 * 180.02562 * 10 9 8 12 12 C 1.33963 * 110.19762 * 0.02562 * 11 10 9 13 13 C 1.40678 * 119.54446 * 0.28720 * 9 8 7 14 14 C 1.39085 * 120.19825 * 359.97438 * 13 9 8 15 15 C 1.55157 * 110.71802 * 236.86157 * 2 1 3 16 16 C 1.54909 * 101.58071 * 205.95402 * 15 2 1 17 17 N 1.47428 * 104.83045 * 37.00823 * 16 15 2 18 18 C 1.36936 * 125.64659 * 155.90725 * 17 16 15 19 19 H 1.07998 * 119.99819 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00098 * 359.97438 * 18 17 16 21 21 N 1.31621 * 120.00140 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47553 * 89.99882 * 22 20 18 24 24 H 1.48507 * 109.47246 * 210.00034 * 22 20 18 25 25 H 1.48501 * 109.47058 * 330.00044 * 22 20 18 26 26 C 1.47019 * 108.70498 * 335.86823 * 17 16 15 27 27 H 1.09001 * 109.47437 * 60.69634 * 1 2 3 28 28 H 1.08998 * 109.47254 * 180.69959 * 1 2 3 29 29 H 1.09008 * 109.47293 * 300.70066 * 1 2 3 30 30 H 0.96998 * 119.99570 * 236.85692 * 3 2 1 31 31 H 1.07998 * 119.65709 * 0.02562 * 7 6 4 32 32 H 1.08002 * 119.86752 * 179.72771 * 8 7 6 33 33 H 1.07993 * 124.90314 * 180.02562 * 11 10 9 34 34 H 1.07995 * 126.92151 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.32256 * 180.02562 * 14 13 9 36 36 H 1.08993 * 111.00549 * 324.03131 * 15 2 1 37 37 H 1.08997 * 111.00449 * 87.84476 * 15 2 1 38 38 H 1.08997 * 110.36932 * 155.84710 * 16 15 2 39 39 H 1.09008 * 110.36799 * 278.17291 * 16 15 2 40 40 H 0.97000 * 120.00088 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.88744 * 241.64362 * 26 17 16 42 42 H 1.09005 * 109.88250 * 120.47245 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3711 0.0000 4 6 1.6869 2.2266 0.9774 5 8 0.9336 1.8607 1.8587 6 6 2.2079 3.6086 0.9776 7 6 3.0711 4.0326 -0.0411 8 6 3.5646 5.3045 -0.0512 9 6 3.2060 6.2040 0.9483 10 8 3.5232 7.4913 1.1890 11 6 2.9147 7.9363 2.3022 12 6 2.1711 6.9625 2.8436 13 6 2.3355 5.7912 1.9733 14 6 1.8365 4.4930 1.9869 15 6 2.0789 -0.7933 -1.2152 16 6 3.4652 -1.2446 -0.6915 17 7 3.2494 -1.5469 0.7353 18 6 4.0125 -2.3918 1.4963 19 1 3.7714 -2.5468 2.5375 20 6 5.0958 -3.0489 0.9294 21 7 5.3893 -2.8603 -0.3398 22 14 6.1364 -4.2019 1.9673 23 1 5.5794 -5.5763 1.8899 24 1 7.5313 -4.2037 1.4578 25 1 6.1257 -3.7423 3.3794 26 6 2.0799 -0.7905 1.2059 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8837 30 1 2.6471 1.6630 -0.7034 31 1 3.3519 3.3443 -0.8246 32 1 4.2326 5.6160 -0.8406 33 1 3.0114 8.9348 2.7022 34 1 1.5706 7.0264 3.7390 35 1 1.1676 4.1740 2.7727 36 1 1.4468 -1.6528 -1.4384 37 1 2.1813 -0.1491 -2.0884 38 1 3.7992 -2.1363 -1.2219 39 1 4.1929 -0.4408 -0.8031 40 1 6.1462 -3.3198 -0.7360 41 1 2.3775 -0.1015 1.9962 42 1 1.3190 -1.4772 1.5770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046339814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:41 Heat of formation + Delta-G solvation = 29.992953 kcal Electronic energy + Delta-G solvation = -25784.932201 eV Core-core repulsion = 22118.510119 eV Total energy + Delta-G solvation = -3666.422082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.67398 -40.10863 -38.05894 -36.86959 -34.06543 -33.11981 -32.03543 -30.75856 -29.95584 -29.28039 -28.63713 -25.67664 -24.53910 -23.46431 -22.89593 -21.57317 -20.88586 -20.29150 -19.05862 -18.05931 -17.57647 -16.99609 -16.47016 -16.34563 -15.65617 -14.88042 -14.65915 -14.62273 -14.37119 -13.83105 -13.68193 -13.42666 -13.29625 -12.95990 -12.80842 -12.69449 -12.42249 -12.17627 -11.86259 -11.71493 -11.54998 -11.17444 -10.92956 -10.84235 -10.49647 -10.40902 -10.32792 -10.07838 -9.96530 -9.65312 -9.31425 -8.86446 -8.64841 -8.58635 -8.49485 -6.79740 -5.63709 -3.03957 0.69683 0.78510 2.12055 2.51225 2.91939 3.36327 3.42060 3.47134 3.49254 3.80240 4.20944 4.39640 4.51384 4.73717 4.78393 4.97834 5.05782 5.09429 5.22678 5.35735 5.41188 5.50992 5.58607 5.62871 5.75319 5.94170 5.95447 6.06117 6.09589 6.15000 6.19272 6.24264 6.30710 6.37964 6.46908 6.53951 6.72573 6.84098 6.87115 7.14359 7.45552 7.65099 7.80030 7.87079 8.36636 8.49733 9.24853 9.85520 10.50270 11.40681 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.003264 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.210045 B = 8575.341448 C = 9216.409961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.702 5.702 4 C 0.562 3.438 5 O -0.535 6.535 6 C -0.144 4.144 7 C -0.060 4.060 8 C -0.112 4.112 9 C 0.069 3.931 10 O -0.194 6.194 11 C 0.001 3.999 12 C -0.201 4.201 13 C -0.144 4.144 14 C -0.006 4.006 15 C -0.147 4.147 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.137 3.863 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.397 0.603 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.209 0.791 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.251 0.749 41 H 0.031 0.969 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 19.907 -1.146 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.352 5.352 4 C 0.349 3.651 5 O -0.414 6.414 6 C -0.148 4.148 7 C -0.079 4.079 8 C -0.130 4.130 9 C 0.021 3.979 10 O -0.095 6.095 11 C -0.063 4.063 12 C -0.220 4.220 13 C -0.145 4.145 14 C -0.025 4.025 15 C -0.186 4.186 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.011 3.989 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.232 0.768 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.225 0.775 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.094 19.621 -0.705 20.876 hybrid contribution 0.900 -0.321 0.387 1.031 sum -6.194 19.300 -0.318 20.272 Atomic orbital electron populations 1.22069 0.94060 1.02324 1.02562 1.21377 0.93162 0.80081 0.98011 1.45906 1.49351 1.12091 1.27881 1.17974 0.80864 0.84402 0.81843 1.90727 1.36267 1.77932 1.36450 1.19912 1.02205 0.94866 0.97779 1.20834 0.94728 0.94828 0.97487 1.19558 1.03615 0.91595 0.98251 1.19859 0.97486 0.83223 0.97336 1.83994 1.60561 1.24556 1.40435 1.23952 0.95888 1.00038 0.86461 1.22557 1.05175 0.91784 1.02474 1.19901 1.01944 0.95459 0.97236 1.20664 0.95641 0.89592 0.96598 1.23368 1.01291 0.98888 0.95050 1.21944 0.89332 1.00640 0.85338 1.44503 1.30615 1.50472 1.07410 1.19096 1.05928 1.16537 0.92971 0.90551 1.24754 0.98784 1.00779 0.96475 1.69772 1.30212 1.46571 1.10860 0.86071 0.79546 0.80737 0.79173 1.21616 1.21701 1.20780 1.21597 0.90282 0.93156 0.93883 0.93173 0.91770 0.90481 0.76810 0.84229 0.84440 0.77477 0.82199 0.83966 0.90438 0.91882 0.87401 0.97197 0.93826 0.95121 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.38 37.16 0.31 -2.11 16 2 C 0.16 2.86 0.81 -129.98 -0.10 2.76 16 3 N -0.70 -11.22 5.09 -46.89 -0.24 -11.46 16 4 C 0.56 9.34 6.98 -12.40 -0.09 9.25 16 5 O -0.54 -10.36 13.33 5.30 0.07 -10.29 16 6 C -0.14 -2.02 5.87 -104.97 -0.62 -2.64 16 7 C -0.06 -0.69 9.46 -39.54 -0.37 -1.07 16 8 C -0.11 -1.21 9.99 -39.89 -0.40 -1.61 16 9 C 0.07 0.82 7.42 -38.32 -0.28 0.54 16 10 O -0.19 -2.09 10.57 4.09 0.04 -2.04 16 11 C 0.00 0.01 11.95 29.23 0.35 0.36 16 12 C -0.20 -1.87 11.14 -37.60 -0.42 -2.28 16 13 C -0.14 -1.76 6.39 -105.18 -0.67 -2.44 16 14 C -0.01 -0.08 9.64 -38.90 -0.38 -0.45 16 15 C -0.15 -2.64 6.07 -24.58 -0.15 -2.79 16 16 C 0.15 3.59 5.87 -2.53 -0.01 3.57 16 17 N -0.60 -15.69 3.39 -170.08 -0.58 -16.27 16 18 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 3.09 6.20 -3.07 -0.02 3.07 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.08 1.33 6.03 -51.92 -0.31 1.02 16 30 H 0.40 5.41 6.50 -40.82 -0.27 5.14 16 31 H 0.14 1.32 6.37 -52.49 -0.33 0.98 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.88 7.65 -52.48 -0.40 1.48 16 36 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 37 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 39 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 42 H 0.03 0.70 7.81 -51.93 -0.41 0.30 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -33.64 343.26 -8.40 -42.04 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.30 Total: 4.35 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.10 Total: -2.64 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.26 Total: -53.95 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.11 Total: -12.33 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.64 -8.40 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046339814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.033 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds