Wall clock time and date at job start Tue Mar 31 2020 11:19:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46507 * 110.63787 * 2 1
4 4 C 1.34775 * 120.00303 * 56.86498 * 3 2 1
5 5 O 1.21578 * 119.99375 * 359.97438 * 4 3 2
6 6 C 1.47694 * 120.00060 * 179.97438 * 4 3 2
7 7 C 1.40101 * 120.02802 * 0.28727 * 6 4 3
8 8 C 1.36428 * 120.68772 * 180.26281 * 7 6 4
9 9 C 1.39165 * 120.27159 * 359.44098 * 8 7 6
10 10 O 1.34749 * 133.24687 * 180.27424 * 9 8 7
11 11 C 1.34443 * 110.95325 * 180.02562 * 10 9 8
12 12 C 1.33963 * 110.19762 * 0.02562 * 11 10 9
13 13 C 1.40678 * 119.54446 * 0.28720 * 9 8 7
14 14 C 1.39085 * 120.19825 * 359.97438 * 13 9 8
15 15 C 1.55157 * 110.71802 * 236.86157 * 2 1 3
16 16 C 1.54909 * 101.58071 * 205.95402 * 15 2 1
17 17 N 1.47428 * 104.83045 * 37.00823 * 16 15 2
18 18 C 1.36936 * 125.64659 * 155.90725 * 17 16 15
19 19 H 1.07998 * 119.99819 * 179.97438 * 18 17 16
20 20 C 1.38807 * 120.00098 * 359.97438 * 18 17 16
21 21 N 1.31621 * 120.00140 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 120.00124 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47553 * 89.99882 * 22 20 18
24 24 H 1.48507 * 109.47246 * 210.00034 * 22 20 18
25 25 H 1.48501 * 109.47058 * 330.00044 * 22 20 18
26 26 C 1.47019 * 108.70498 * 335.86823 * 17 16 15
27 27 H 1.09001 * 109.47437 * 60.69634 * 1 2 3
28 28 H 1.08998 * 109.47254 * 180.69959 * 1 2 3
29 29 H 1.09008 * 109.47293 * 300.70066 * 1 2 3
30 30 H 0.96998 * 119.99570 * 236.85692 * 3 2 1
31 31 H 1.07998 * 119.65709 * 0.02562 * 7 6 4
32 32 H 1.08002 * 119.86752 * 179.72771 * 8 7 6
33 33 H 1.07993 * 124.90314 * 180.02562 * 11 10 9
34 34 H 1.07995 * 126.92151 * 180.02562 * 12 11 10
35 35 H 1.08006 * 120.32256 * 180.02562 * 14 13 9
36 36 H 1.08993 * 111.00549 * 324.03131 * 15 2 1
37 37 H 1.08997 * 111.00449 * 87.84476 * 15 2 1
38 38 H 1.08997 * 110.36932 * 155.84710 * 16 15 2
39 39 H 1.09008 * 110.36799 * 278.17291 * 16 15 2
40 40 H 0.97000 * 120.00088 * 180.02562 * 21 20 18
41 41 H 1.08990 * 109.88744 * 241.64362 * 26 17 16
42 42 H 1.09005 * 109.88250 * 120.47245 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0464 1.3711 0.0000
4 6 1.6869 2.2266 0.9774
5 8 0.9336 1.8607 1.8587
6 6 2.2079 3.6086 0.9776
7 6 3.0711 4.0326 -0.0411
8 6 3.5646 5.3045 -0.0512
9 6 3.2060 6.2040 0.9483
10 8 3.5232 7.4913 1.1890
11 6 2.9147 7.9363 2.3022
12 6 2.1711 6.9625 2.8436
13 6 2.3355 5.7912 1.9733
14 6 1.8365 4.4930 1.9869
15 6 2.0789 -0.7933 -1.2152
16 6 3.4652 -1.2446 -0.6915
17 7 3.2494 -1.5469 0.7353
18 6 4.0125 -2.3918 1.4963
19 1 3.7714 -2.5468 2.5375
20 6 5.0958 -3.0489 0.9294
21 7 5.3893 -2.8603 -0.3398
22 14 6.1364 -4.2019 1.9673
23 1 5.5794 -5.5763 1.8899
24 1 7.5313 -4.2037 1.4578
25 1 6.1257 -3.7423 3.3794
26 6 2.0799 -0.7905 1.2059
27 1 -0.3634 0.5030 -0.8962
28 1 -0.3634 -1.0276 0.0125
29 1 -0.3634 0.5247 0.8837
30 1 2.6471 1.6630 -0.7034
31 1 3.3519 3.3443 -0.8246
32 1 4.2326 5.6160 -0.8406
33 1 3.0114 8.9348 2.7022
34 1 1.5706 7.0264 3.7390
35 1 1.1676 4.1740 2.7727
36 1 1.4468 -1.6528 -1.4384
37 1 2.1813 -0.1491 -2.0884
38 1 3.7992 -2.1363 -1.2219
39 1 4.1929 -0.4408 -0.8031
40 1 6.1462 -3.3198 -0.7360
41 1 2.3775 -0.1015 1.9962
42 1 1.3190 -1.4772 1.5770
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046339814.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:41
Heat of formation + Delta-G solvation = 29.992953 kcal
Electronic energy + Delta-G solvation = -25784.932201 eV
Core-core repulsion = 22118.510119 eV
Total energy + Delta-G solvation = -3666.422082 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.82 seconds
Orbital eigenvalues (eV)
-42.67398 -40.10863 -38.05894 -36.86959 -34.06543 -33.11981 -32.03543 -30.75856
-29.95584 -29.28039 -28.63713 -25.67664 -24.53910 -23.46431 -22.89593 -21.57317
-20.88586 -20.29150 -19.05862 -18.05931 -17.57647 -16.99609 -16.47016 -16.34563
-15.65617 -14.88042 -14.65915 -14.62273 -14.37119 -13.83105 -13.68193 -13.42666
-13.29625 -12.95990 -12.80842 -12.69449 -12.42249 -12.17627 -11.86259 -11.71493
-11.54998 -11.17444 -10.92956 -10.84235 -10.49647 -10.40902 -10.32792 -10.07838
-9.96530 -9.65312 -9.31425 -8.86446 -8.64841 -8.58635 -8.49485 -6.79740
-5.63709 -3.03957 0.69683 0.78510 2.12055 2.51225 2.91939 3.36327
3.42060 3.47134 3.49254 3.80240 4.20944 4.39640 4.51384 4.73717
4.78393 4.97834 5.05782 5.09429 5.22678 5.35735 5.41188 5.50992
5.58607 5.62871 5.75319 5.94170 5.95447 6.06117 6.09589 6.15000
6.19272 6.24264 6.30710 6.37964 6.46908 6.53951 6.72573 6.84098
6.87115 7.14359 7.45552 7.65099 7.80030 7.87079 8.36636 8.49733
9.24853 9.85520 10.50270 11.40681
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.017015 B = 0.003264 C = 0.003037
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1645.210045 B = 8575.341448 C = 9216.409961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.159 3.841
3 N -0.702 5.702
4 C 0.562 3.438
5 O -0.535 6.535
6 C -0.144 4.144
7 C -0.060 4.060
8 C -0.112 4.112
9 C 0.069 3.931
10 O -0.194 6.194
11 C 0.001 3.999
12 C -0.201 4.201
13 C -0.144 4.144
14 C -0.006 4.006
15 C -0.147 4.147
16 C 0.152 3.848
17 N -0.604 5.604
18 C -0.217 4.217
19 H 0.077 0.923
20 C -0.013 4.013
21 N -0.925 5.925
22 Si 0.914 3.086
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.282 1.282
26 C 0.137 3.863
27 H 0.049 0.951
28 H 0.063 0.937
29 H 0.076 0.924
30 H 0.397 0.603
31 H 0.140 0.860
32 H 0.138 0.862
33 H 0.209 0.791
34 H 0.160 0.840
35 H 0.143 0.857
36 H 0.077 0.923
37 H 0.063 0.937
38 H 0.108 0.892
39 H 0.010 0.990
40 H 0.251 0.749
41 H 0.031 0.969
42 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.922 19.907 -1.146 21.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.074 3.926
3 N -0.352 5.352
4 C 0.349 3.651
5 O -0.414 6.414
6 C -0.148 4.148
7 C -0.079 4.079
8 C -0.130 4.130
9 C 0.021 3.979
10 O -0.095 6.095
11 C -0.063 4.063
12 C -0.220 4.220
13 C -0.145 4.145
14 C -0.025 4.025
15 C -0.186 4.186
16 C 0.027 3.973
17 N -0.330 5.330
18 C -0.345 4.345
19 H 0.094 0.906
20 C -0.208 4.208
21 N -0.574 5.574
22 Si 0.745 3.255
23 H -0.216 1.216
24 H -0.217 1.217
25 H -0.208 1.208
26 C 0.011 3.989
27 H 0.068 0.932
28 H 0.082 0.918
29 H 0.095 0.905
30 H 0.232 0.768
31 H 0.158 0.842
32 H 0.156 0.844
33 H 0.225 0.775
34 H 0.178 0.822
35 H 0.160 0.840
36 H 0.096 0.904
37 H 0.081 0.919
38 H 0.126 0.874
39 H 0.028 0.972
40 H 0.062 0.938
41 H 0.049 0.951
42 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -7.094 19.621 -0.705 20.876
hybrid contribution 0.900 -0.321 0.387 1.031
sum -6.194 19.300 -0.318 20.272
Atomic orbital electron populations
1.22069 0.94060 1.02324 1.02562 1.21377 0.93162 0.80081 0.98011
1.45906 1.49351 1.12091 1.27881 1.17974 0.80864 0.84402 0.81843
1.90727 1.36267 1.77932 1.36450 1.19912 1.02205 0.94866 0.97779
1.20834 0.94728 0.94828 0.97487 1.19558 1.03615 0.91595 0.98251
1.19859 0.97486 0.83223 0.97336 1.83994 1.60561 1.24556 1.40435
1.23952 0.95888 1.00038 0.86461 1.22557 1.05175 0.91784 1.02474
1.19901 1.01944 0.95459 0.97236 1.20664 0.95641 0.89592 0.96598
1.23368 1.01291 0.98888 0.95050 1.21944 0.89332 1.00640 0.85338
1.44503 1.30615 1.50472 1.07410 1.19096 1.05928 1.16537 0.92971
0.90551 1.24754 0.98784 1.00779 0.96475 1.69772 1.30212 1.46571
1.10860 0.86071 0.79546 0.80737 0.79173 1.21616 1.21701 1.20780
1.21597 0.90282 0.93156 0.93883 0.93173 0.91770 0.90481 0.76810
0.84229 0.84440 0.77477 0.82199 0.83966 0.90438 0.91882 0.87401
0.97197 0.93826 0.95121 0.95107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.42 8.38 37.16 0.31 -2.11 16
2 C 0.16 2.86 0.81 -129.98 -0.10 2.76 16
3 N -0.70 -11.22 5.09 -46.89 -0.24 -11.46 16
4 C 0.56 9.34 6.98 -12.40 -0.09 9.25 16
5 O -0.54 -10.36 13.33 5.30 0.07 -10.29 16
6 C -0.14 -2.02 5.87 -104.97 -0.62 -2.64 16
7 C -0.06 -0.69 9.46 -39.54 -0.37 -1.07 16
8 C -0.11 -1.21 9.99 -39.89 -0.40 -1.61 16
9 C 0.07 0.82 7.42 -38.32 -0.28 0.54 16
10 O -0.19 -2.09 10.57 4.09 0.04 -2.04 16
11 C 0.00 0.01 11.95 29.23 0.35 0.36 16
12 C -0.20 -1.87 11.14 -37.60 -0.42 -2.28 16
13 C -0.14 -1.76 6.39 -105.18 -0.67 -2.44 16
14 C -0.01 -0.08 9.64 -38.90 -0.38 -0.45 16
15 C -0.15 -2.64 6.07 -24.58 -0.15 -2.79 16
16 C 0.15 3.59 5.87 -2.53 -0.01 3.57 16
17 N -0.60 -15.69 3.39 -170.08 -0.58 -16.27 16
18 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16
19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16
20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16
21 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16
22 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16
23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
26 C 0.14 3.09 6.20 -3.07 -0.02 3.07 16
27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16
29 H 0.08 1.33 6.03 -51.92 -0.31 1.02 16
30 H 0.40 5.41 6.50 -40.82 -0.27 5.14 16
31 H 0.14 1.32 6.37 -52.49 -0.33 0.98 16
32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16
33 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16
34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16
35 H 0.14 1.88 7.65 -52.48 -0.40 1.48 16
36 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16
37 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16
38 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16
39 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16
40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
41 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16
42 H 0.03 0.70 7.81 -51.93 -0.41 0.30 16
LS Contribution 343.26 15.07 5.17 5.17
Total: -1.00 -33.64 343.26 -8.40 -42.04
By element:
Atomic # 1 Polarization: 9.65 SS G_CDS: -5.30 Total: 4.35 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: -3.10 Total: -2.64 kcal
Atomic # 7 Polarization: -53.69 SS G_CDS: -0.26 Total: -53.95 kcal
Atomic # 8 Polarization: -12.45 SS G_CDS: 0.11 Total: -12.33 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -33.64 -8.40 -42.04 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046339814.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.033 kcal
(2) G-P(sol) polarization free energy of solvation -33.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.82 seconds