Wall clock time and date at job start Tue Mar 31 2020 11:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 110.63787 * 2 1 4 4 C 1.34775 * 120.00303 * 56.86498 * 3 2 1 5 5 O 1.21578 * 119.99375 * 359.97438 * 4 3 2 6 6 C 1.47694 * 120.00060 * 179.97438 * 4 3 2 7 7 C 1.40101 * 120.02802 * 0.28727 * 6 4 3 8 8 C 1.36428 * 120.68772 * 180.26281 * 7 6 4 9 9 C 1.39165 * 120.27159 * 359.44098 * 8 7 6 10 10 O 1.34749 * 133.24687 * 180.27424 * 9 8 7 11 11 C 1.34443 * 110.95325 * 180.02562 * 10 9 8 12 12 C 1.33963 * 110.19762 * 0.02562 * 11 10 9 13 13 C 1.40678 * 119.54446 * 0.28720 * 9 8 7 14 14 C 1.39085 * 120.19825 * 359.97438 * 13 9 8 15 15 C 1.55157 * 110.71802 * 236.86157 * 2 1 3 16 16 C 1.54909 * 101.58071 * 205.95402 * 15 2 1 17 17 N 1.47428 * 104.83045 * 37.00823 * 16 15 2 18 18 C 1.36936 * 125.64659 * 155.90725 * 17 16 15 19 19 H 1.07998 * 119.99819 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00098 * 359.97438 * 18 17 16 21 21 N 1.31621 * 120.00140 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47553 * 89.99882 * 22 20 18 24 24 H 1.48507 * 109.47246 * 210.00034 * 22 20 18 25 25 H 1.48501 * 109.47058 * 330.00044 * 22 20 18 26 26 C 1.47019 * 108.70498 * 335.86823 * 17 16 15 27 27 H 1.09001 * 109.47437 * 60.69634 * 1 2 3 28 28 H 1.08998 * 109.47254 * 180.69959 * 1 2 3 29 29 H 1.09008 * 109.47293 * 300.70066 * 1 2 3 30 30 H 0.96998 * 119.99570 * 236.85692 * 3 2 1 31 31 H 1.07998 * 119.65709 * 0.02562 * 7 6 4 32 32 H 1.08002 * 119.86752 * 179.72771 * 8 7 6 33 33 H 1.07993 * 124.90314 * 180.02562 * 11 10 9 34 34 H 1.07995 * 126.92151 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.32256 * 180.02562 * 14 13 9 36 36 H 1.08993 * 111.00549 * 324.03131 * 15 2 1 37 37 H 1.08997 * 111.00449 * 87.84476 * 15 2 1 38 38 H 1.08997 * 110.36932 * 155.84710 * 16 15 2 39 39 H 1.09008 * 110.36799 * 278.17291 * 16 15 2 40 40 H 0.97000 * 120.00088 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.88744 * 241.64362 * 26 17 16 42 42 H 1.09005 * 109.88250 * 120.47245 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3711 0.0000 4 6 1.6869 2.2266 0.9774 5 8 0.9336 1.8607 1.8587 6 6 2.2079 3.6086 0.9776 7 6 3.0711 4.0326 -0.0411 8 6 3.5646 5.3045 -0.0512 9 6 3.2060 6.2040 0.9483 10 8 3.5232 7.4913 1.1890 11 6 2.9147 7.9363 2.3022 12 6 2.1711 6.9625 2.8436 13 6 2.3355 5.7912 1.9733 14 6 1.8365 4.4930 1.9869 15 6 2.0789 -0.7933 -1.2152 16 6 3.4652 -1.2446 -0.6915 17 7 3.2494 -1.5469 0.7353 18 6 4.0125 -2.3918 1.4963 19 1 3.7714 -2.5468 2.5375 20 6 5.0958 -3.0489 0.9294 21 7 5.3893 -2.8603 -0.3398 22 14 6.1364 -4.2019 1.9673 23 1 5.5794 -5.5763 1.8899 24 1 7.5313 -4.2037 1.4578 25 1 6.1257 -3.7423 3.3794 26 6 2.0799 -0.7905 1.2059 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8837 30 1 2.6471 1.6630 -0.7034 31 1 3.3519 3.3443 -0.8246 32 1 4.2326 5.6160 -0.8406 33 1 3.0114 8.9348 2.7022 34 1 1.5706 7.0264 3.7390 35 1 1.1676 4.1740 2.7727 36 1 1.4468 -1.6528 -1.4384 37 1 2.1813 -0.1491 -2.0884 38 1 3.7992 -2.1363 -1.2219 39 1 4.1929 -0.4408 -0.8031 40 1 6.1462 -3.3198 -0.7360 41 1 2.3775 -0.1015 1.9962 42 1 1.3190 -1.4772 1.5770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046339814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:38 Heat of formation + Delta-G solvation = 8.558048 kcal Electronic energy + Delta-G solvation = -25785.861688 eV Core-core repulsion = 22118.510119 eV Total energy + Delta-G solvation = -3667.351569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46876 -41.44349 -39.35510 -38.16374 -35.77621 -34.07784 -33.56954 -32.14906 -31.20962 -30.42440 -30.11603 -27.55352 -25.79430 -25.03380 -23.75308 -22.39591 -22.28857 -21.92159 -20.49876 -19.26316 -18.76748 -18.40057 -17.57396 -17.14867 -17.11002 -16.68911 -16.07104 -16.02560 -15.57314 -15.22905 -14.85758 -14.82024 -14.38264 -14.16761 -14.05029 -13.79017 -13.67788 -13.61039 -13.30171 -13.25838 -13.01408 -12.80843 -12.78268 -12.08256 -12.06967 -12.03593 -11.96603 -11.69614 -11.56302 -11.28689 -10.76464 -10.73286 -10.11857 -9.70489 -9.30354 -8.88671 -7.78841 -5.22261 -0.27369 -0.07322 1.39933 1.45226 1.46682 1.55479 1.77579 1.78905 2.11499 2.48283 2.74690 3.30258 3.43378 3.54129 3.63599 3.70890 3.75074 3.98495 4.02008 4.15462 4.18003 4.23020 4.40202 4.61816 4.63782 4.68147 4.78976 4.84275 4.85601 4.90790 5.01458 5.07688 5.09303 5.11215 5.19269 5.36160 5.39396 5.42498 5.44606 5.61166 5.67596 5.80796 6.07410 6.31411 6.57865 7.11194 7.22600 7.76963 8.40471 9.22426 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.003264 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.210045 B = 8575.341448 C = 9216.409961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.696 5.696 4 C 0.560 3.440 5 O -0.570 6.570 6 C -0.161 4.161 7 C -0.063 4.063 8 C -0.106 4.106 9 C 0.055 3.945 10 O -0.201 6.201 11 C 0.020 3.980 12 C -0.222 4.222 13 C -0.160 4.160 14 C -0.021 4.021 15 C -0.127 4.127 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.060 4.060 21 N -0.942 5.942 22 Si 0.978 3.022 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.137 3.863 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.409 0.591 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.257 0.743 34 H 0.180 0.820 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.077 0.923 39 H -0.005 1.005 40 H 0.249 0.751 41 H 0.004 0.996 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 21.879 -2.075 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 N -0.348 5.348 4 C 0.349 3.651 5 O -0.451 6.451 6 C -0.165 4.165 7 C -0.082 4.082 8 C -0.124 4.124 9 C 0.007 3.993 10 O -0.101 6.101 11 C -0.044 4.044 12 C -0.241 4.241 13 C -0.161 4.161 14 C -0.040 4.040 15 C -0.166 4.166 16 C 0.030 3.970 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.086 0.914 20 C -0.253 4.253 21 N -0.592 5.592 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.011 3.989 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.272 0.728 34 H 0.197 0.803 35 H 0.150 0.850 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.013 0.987 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.953 21.615 -1.656 22.766 hybrid contribution 0.886 -0.825 0.752 1.425 sum -6.067 20.790 -0.903 21.676 Atomic orbital electron populations 1.21989 0.92045 1.02895 1.03188 1.21199 0.94449 0.80489 0.95554 1.45800 1.49527 1.11164 1.28291 1.18396 0.80196 0.85381 0.81150 1.90703 1.37917 1.78808 1.37714 1.19795 1.03807 0.93486 0.99365 1.21008 0.94210 0.95670 0.97275 1.19880 1.03105 0.90944 0.98441 1.20146 0.97609 0.83993 0.97595 1.84018 1.60802 1.23842 1.41485 1.24890 0.93549 1.01313 0.84641 1.22894 1.06683 0.91083 1.03415 1.20219 1.01953 0.95635 0.98328 1.20665 0.96243 0.90504 0.96625 1.23222 0.97526 0.99768 0.96070 1.21781 0.92312 0.98821 0.84112 1.44780 1.31169 1.50462 1.08498 1.19359 1.06995 1.17633 0.93246 0.91357 1.25531 0.99792 1.02191 0.97742 1.70001 1.30276 1.47018 1.11895 0.85096 0.77722 0.78790 0.77797 1.20958 1.21489 1.20323 1.21668 0.89145 0.92712 0.95412 0.90364 0.91179 0.92050 0.75314 0.82243 0.81611 0.72765 0.80272 0.84992 0.89678 0.87847 0.90486 0.98710 0.94129 0.97816 0.95901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.38 71.98 0.60 -3.76 16 2 C 0.17 5.98 0.81 4.79 0.00 5.99 16 3 N -0.70 -21.86 5.09 -420.52 -2.14 -24.00 16 4 C 0.56 18.90 6.98 86.74 0.61 19.51 16 5 O -0.57 -22.96 13.33 -3.96 -0.05 -23.01 16 6 C -0.16 -4.55 5.87 -20.09 -0.12 -4.67 16 7 C -0.06 -1.39 9.46 22.30 0.21 -1.17 16 8 C -0.11 -2.09 9.99 22.07 0.22 -1.87 16 9 C 0.05 1.22 7.42 23.09 0.17 1.39 16 10 O -0.20 -3.80 10.57 -8.26 -0.09 -3.89 16 11 C 0.02 0.25 11.95 66.85 0.80 1.05 16 12 C -0.22 -3.75 11.14 23.55 0.26 -3.49 16 13 C -0.16 -3.84 6.39 -20.23 -0.13 -3.96 16 14 C -0.02 -0.59 9.64 22.71 0.22 -0.37 16 15 C -0.13 -4.37 6.07 31.99 0.19 -4.17 16 16 C 0.15 7.33 5.87 86.85 0.51 7.84 16 17 N -0.62 -33.23 3.39 -692.00 -2.35 -35.58 16 18 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 21 N -0.94 -55.41 10.09 21.65 0.22 -55.20 16 22 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 C 0.14 6.34 6.20 86.73 0.54 6.88 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 29 H 0.06 2.11 6.03 -2.38 -0.01 2.09 16 30 H 0.41 10.55 6.50 -92.71 -0.60 9.95 16 31 H 0.16 2.71 6.37 -2.91 -0.02 2.69 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.26 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.13 3.76 7.65 -2.91 -0.02 3.73 16 36 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 37 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 38 H 0.08 4.17 5.87 -2.39 -0.01 4.16 16 39 H -0.01 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.00 0.20 6.90 -2.39 -0.02 0.18 16 42 H 0.02 1.08 7.81 -2.38 -0.02 1.07 16 Total: -1.00 -76.01 343.26 3.49 -72.53 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.45 Total: 17.75 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.42 Total: 2.84 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.27 Total: -114.78 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.14 Total: -26.90 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.01 3.49 -72.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046339814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.084 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds