Wall clock time and date at job start Tue Mar 31 2020 11:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46505 * 110.88811 * 2 1 4 4 C 1.34773 * 120.00095 * 62.43067 * 3 2 1 5 5 O 1.21663 * 119.99849 * 359.97438 * 4 3 2 6 6 C 1.46974 * 120.00178 * 179.72568 * 4 3 2 7 7 C 1.35806 * 125.13136 * 180.27249 * 6 4 3 8 8 C 1.46247 * 106.08099 * 179.97438 * 7 6 4 9 9 C 1.39700 * 134.19728 * 179.97438 * 8 7 6 10 10 C 1.36613 * 119.71389 * 180.02562 * 9 8 7 11 11 C 1.38837 * 120.44613 * 359.95885 * 10 9 8 12 12 C 1.37790 * 120.74234 * 0.03847 * 11 10 9 13 13 C 1.39030 * 119.85545 * 359.97438 * 12 11 10 14 14 O 1.34714 * 133.24085 * 180.31623 * 13 12 11 15 15 C 1.55158 * 111.03652 * 236.09603 * 2 1 3 16 16 C 1.54324 * 102.94499 * 206.41051 * 15 2 1 17 17 N 1.47019 * 107.26926 * 22.19073 * 16 15 2 18 18 C 1.36938 * 125.64758 * 181.02266 * 17 16 15 19 19 H 1.07998 * 119.99968 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00424 * 0.04697 * 18 17 16 21 21 N 1.31626 * 119.99313 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00669 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99560 * 22 20 18 24 24 H 1.48496 * 109.47394 * 209.99964 * 22 20 18 25 25 H 1.48507 * 109.47037 * 329.99919 * 22 20 18 26 26 C 1.47418 * 108.70592 * 1.06250 * 17 16 15 27 27 H 1.09005 * 109.47369 * 60.69430 * 1 2 3 28 28 H 1.08997 * 109.47513 * 180.70137 * 1 2 3 29 29 H 1.09006 * 109.47134 * 300.70238 * 1 2 3 30 30 H 0.97000 * 119.99792 * 242.42632 * 3 2 1 31 31 H 1.08004 * 126.95907 * 359.97438 * 7 6 4 32 32 H 1.08003 * 120.14122 * 359.97438 * 9 8 7 33 33 H 1.08010 * 119.78069 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.62925 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.07544 * 180.02562 * 12 11 10 36 36 H 1.09000 * 110.71782 * 324.77214 * 15 2 1 37 37 H 1.09001 * 110.72149 * 88.04833 * 15 2 1 38 38 H 1.08999 * 109.88386 * 262.77913 * 16 15 2 39 39 H 1.08994 * 109.88349 * 141.60919 * 16 15 2 40 40 H 0.97003 * 119.99449 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.37048 * 217.03499 * 26 17 16 42 42 H 1.09002 * 110.46494 * 94.75566 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1150 1.7966 1.9684 6 6 2.3169 3.5622 1.0375 7 6 2.1201 4.4737 2.0247 8 6 2.8237 5.6848 1.6040 9 6 3.0019 6.9520 2.1645 10 6 3.7369 7.8904 1.4970 11 6 4.3078 7.5925 0.2670 12 6 4.1439 6.3487 -0.3029 13 6 3.3999 5.3774 0.3574 14 8 3.0774 4.1031 0.0627 15 6 2.0869 -0.8078 -1.2019 16 6 3.4682 -1.2733 -0.6953 17 7 3.4274 -1.2420 0.7740 18 6 4.4642 -1.5651 1.6083 19 1 4.3331 -1.5102 2.6788 20 6 5.6838 -1.9627 1.0780 21 7 5.8435 -2.0297 -0.2269 22 14 7.0983 -2.4027 2.2158 23 1 7.0455 -3.8523 2.5336 24 1 8.3869 -2.0890 1.5479 25 1 6.9870 -1.6165 3.4708 26 6 2.0853 -0.8063 1.2006 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8837 30 1 2.5885 1.6832 -0.7446 31 1 1.5578 4.3328 2.9361 32 1 2.5599 7.1890 3.1210 33 1 3.8751 8.8706 1.9291 34 1 4.8867 8.3442 -0.2491 35 1 4.5932 6.1285 -1.2600 36 1 1.4480 -1.6634 -1.4207 37 1 2.1929 -0.1699 -2.0794 38 1 4.2432 -0.5986 -1.0589 39 1 3.6664 -2.2884 -1.0391 40 1 6.6957 -2.3080 -0.5975 41 1 2.1553 -0.1715 2.0838 42 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046819670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:33 Heat of formation + Delta-G solvation = 26.398761 kcal Electronic energy + Delta-G solvation = -26017.569833 eV Core-core repulsion = 22350.991895 eV Total energy + Delta-G solvation = -3666.577938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54970 -39.82361 -38.03258 -37.28490 -34.04533 -32.87525 -32.03790 -30.60388 -30.24626 -29.35169 -28.65943 -25.69785 -24.62563 -23.51361 -22.80307 -21.79098 -20.80474 -20.16731 -19.18614 -18.17737 -17.53773 -16.84359 -16.39342 -16.17623 -15.56291 -15.02875 -14.63860 -14.52993 -14.27349 -14.06914 -13.71893 -13.47684 -13.24581 -13.08751 -12.76813 -12.46879 -12.15981 -12.08593 -11.96543 -11.82109 -11.68256 -11.16678 -10.90087 -10.88005 -10.54285 -10.39860 -10.31426 -10.08561 -10.03551 -9.65468 -9.60849 -8.84536 -8.74455 -8.56770 -8.34667 -6.78900 -5.69033 -3.01026 0.49219 1.16860 1.80660 2.43539 3.25360 3.38514 3.42376 3.47410 3.49353 3.52236 4.36118 4.48572 4.52793 4.71462 4.90776 4.97863 5.04435 5.12865 5.24269 5.35193 5.44827 5.47762 5.60327 5.65378 5.71571 5.93920 5.98648 6.04604 6.09613 6.12241 6.20215 6.21463 6.30612 6.36697 6.38138 6.50266 6.63327 6.77757 6.92511 7.05024 7.55665 7.57463 7.74565 7.82839 8.27560 8.31754 9.25261 9.85238 10.50808 11.43061 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.004046 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.498483 B = 6918.596628 C = 8103.070423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.153 3.847 3 N -0.684 5.684 4 C 0.600 3.400 5 O -0.515 6.515 6 C -0.010 4.010 7 C -0.125 4.125 8 C -0.141 4.141 9 C -0.062 4.062 10 C -0.141 4.141 11 C -0.089 4.089 12 C -0.109 4.109 13 C 0.068 3.932 14 O -0.182 6.182 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.131 3.869 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.404 0.596 31 H 0.170 0.830 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.056 0.944 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 17.734 -1.978 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 N -0.333 5.333 4 C 0.384 3.616 5 O -0.393 6.393 6 C -0.060 4.060 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.080 4.080 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.020 3.980 14 O -0.083 6.083 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.004 3.996 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.239 0.761 31 H 0.187 0.813 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.053 17.181 -1.594 19.041 hybrid contribution 1.197 -0.074 0.256 1.226 sum -6.856 17.107 -1.338 18.478 Atomic orbital electron populations 1.22001 0.94018 1.02459 1.02368 1.21620 0.92752 0.80106 0.98851 1.45751 1.52949 1.12756 1.21860 1.16583 0.80345 0.81453 0.83193 1.90836 1.39459 1.73958 1.35013 1.22259 0.98527 0.95434 0.89765 1.22688 1.01445 0.90368 1.00024 1.19953 1.02566 0.95686 0.96020 1.20357 0.97447 0.90667 0.99555 1.20777 0.99553 0.99810 0.95802 1.20977 0.98860 0.95329 0.95500 1.20020 1.00426 0.91102 1.01165 1.19783 0.99296 0.83675 0.95279 1.84056 1.57627 1.23735 1.42897 1.23241 1.00566 0.98888 0.95759 1.21169 0.89957 0.99994 0.83699 1.44439 1.07756 1.78912 1.01814 1.19064 0.89375 1.37660 0.89002 0.90555 1.24760 0.97719 1.01977 0.96016 1.69951 1.24123 1.53959 1.09181 0.86132 0.81958 0.78207 0.79598 1.21605 1.21726 1.20753 1.21900 0.87698 0.94966 0.95048 0.92943 0.91479 0.91006 0.76067 0.81285 0.85260 0.85249 0.84679 0.84719 0.90600 0.91640 0.93596 0.93698 0.93872 0.92622 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.62 37.15 0.32 -1.93 16 2 C 0.15 2.73 0.82 -129.67 -0.11 2.62 16 3 N -0.68 -11.83 5.17 -46.82 -0.24 -12.07 16 4 C 0.60 10.66 7.18 -12.72 -0.09 10.57 16 5 O -0.51 -10.07 13.59 5.22 0.07 -10.00 16 6 C -0.01 -0.16 7.07 -36.92 -0.26 -0.42 16 7 C -0.12 -1.79 10.80 -37.24 -0.40 -2.19 16 8 C -0.14 -1.87 6.38 -105.19 -0.67 -2.54 16 9 C -0.06 -0.64 10.06 -39.62 -0.40 -1.04 16 10 C -0.14 -1.22 9.98 -39.95 -0.40 -1.62 16 11 C -0.09 -0.77 10.01 -39.52 -0.40 -1.16 16 12 C -0.11 -1.18 10.07 -39.45 -0.40 -1.58 16 13 C 0.07 0.94 7.41 -38.35 -0.28 0.66 16 14 O -0.18 -2.83 10.28 2.77 0.03 -2.80 16 15 C -0.15 -2.59 5.99 -24.90 -0.15 -2.74 16 16 C 0.18 4.20 5.36 -3.07 -0.02 4.19 16 17 N -0.60 -15.62 3.39 -170.08 -0.58 -16.20 16 18 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.22 10.31 55.49 0.57 -26.65 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.13 2.88 6.11 -2.53 -0.02 2.86 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.07 1.16 6.45 -51.93 -0.33 0.82 16 30 H 0.40 6.50 8.20 -40.82 -0.33 6.17 16 31 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 37 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 38 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 39 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 42 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -32.80 347.92 -8.97 -41.78 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.53 Total: 4.26 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.52 Total: -1.20 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.25 Total: -54.91 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.10 Total: -12.80 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.80 -8.97 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.175 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds